Rh7BG274500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0012285
Physical Location & Seq
Reverse (-)
25468190 .. 25469050
861 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG274500.1

Sequence Viewer

Length: 861 bp
ATGGATTTCTCCCACCTCTCCGACTCCGACGAAGACTCCGCCGTAGAAGACCTCCTATCCCAAGCCAAAGACCACATCCTCCTCGAGCAGCTCTCCGCCATCAACTGCTCCGGCTTCACCGACTCCGTCCTCCCCACCGACCTCGAGTCCCGCTTCTGCAGACTCAAGTCTTTCCCCGTCACCAAGCACAAAACCACCGCCTCCCGCCCACCTCAAACCACCGCTTCGTTCCGCCATGATTCGGTTCAGGCTGAAAACCCAGATGAGAAAAAGGTTCCTAATCCGAAATCACAGTCTGGGTATGAGTCACAGCCTTTGGAATCGTCGGAGTTTTCACCGGAAAAGGGAATGACGGCTGCGAAACCGAAGCCAAAACATGGGTCGGTTTCGTCTCGCTCGAATTCTTCGAATTCATCTCCCGATAGTGCAATTTTCTCACCGGCCAAGAGAGTGTCAGGCAAGAAGCAGCGTTCTAAATCGAAATCGAAATCGAAATCGAAATCTGGGTGGTTGTCTTCTCCGTTGGGTTCTTGCAATTCGTTGAGGAATGATTCTCCTTCGCCGCCGAGGAAAGCCGGTTGCTTCTGGTGTTCTCCAAAGACAAAGAGTGCTTCTTCTCAGAGAAAGAGCAAGGAAAATGGGGGTGTTGGTGGTGGGCTTGGTCTCAATTTCAGCGACGACGATGAGCTCCTGTCTGATTTGGGAAGCTTTTCGAAGAAAGAGCAGAGCAAGATGCTAAAGAAGGCGATGAAGGAGGAAGAGAAGATCAGTAGAGAAGCTGAGAAAATTGTGAAGTGGGCTAAGCAAGAGTCGGCTAGAATGAATGTCACTGGTATTGATGATGAACTTAGTGATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

286

Amino Acids

31.14

Weight (kDa)

8.93

Isoelectric Point (pI)

60.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012285)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23270 AT1G31460
fragaria_vesca FvH4_5g24380
malus_domestica MD16G1288300.v1.1
prunus_persica Prupe.5G017000_v2.0.a1
pyrus_communis pycom16g25600
rosa_chinensis RchiOBHm_Chr7g0214771
rosa_laevigata RLG00000002723 RLG00000020760
rosa_multiflora Rmu_co8342721.1_g000001 Rmu_sc0002308.1_g000045 Rmu_sc0026107.1_g000001
rosa_roxburghii Rroxscaffold_3G00245100
rosa_rugosa Rorug06G0112700
rosa_samantha Rh7AG283900 Rh7BG274500 Rh7CG303300 Rh7DG287200
rosa_wichuraiana Rw7G024200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 377
AciI CCGC 8 cut(s) 39, 96, 151, 198, 205, 222, 232, 563
AcoI YGGCCR 1 cut(s) 441
AcsI RAATTY 2 cut(s) 400, 409
AfiI CCNNNNNNNGG 3 cut(s) 241, 344, 377
AhdI GACNNNNNGTC 1 cut(s) 145
AluBI AGCT 4 cut(s) 91, 688, 708, 779
AluI AGCT 4 cut(s) 91, 688, 708, 779
Alw21I GWGCWC 1 cut(s) 690
Alw26I GTCTC 2 cut(s) 396, 668
Ama87I CYCGRG 2 cut(s) 83, 143
AoxI GGCC 1 cut(s) 441
ApeKI GCWGC 3 cut(s) 88, 356, 466
ApoI RAATTY 2 cut(s) 400, 409
ArsI GACNNNNNNTTYG 4 cut(s) 278, 310, 365, 397
Asp700I GAANNNNTTC 1 cut(s) 709
AsuHPI GGTGA 4 cut(s) 109, 172, 327, 429
AsuII TTCGAA 2 cut(s) 407, 713
AvaI CYCGRG 2 cut(s) 83, 143
BanII GRGCYC 1 cut(s) 690
BbsI GAAGAC 3 cut(s) 39, 54, 507
Bbv12I GWGCWC 1 cut(s) 690
BbvI GCAGC 3 cut(s) 100, 343, 478
BccI CCATC 1 cut(s) 107
BceAI ACGGC 2 cut(s) 26, 369
BcoDI GTCTC 2 cut(s) 396, 668
BfaI CTAG 1 cut(s) 816
BfmI CTRYAG 1 cut(s) 157
BisI GCNGC 4 cut(s) 89, 357, 467, 563
BlpI GCTNAGC 1 cut(s) 801
BlsI GCNGC 4 cut(s) 90, 358, 468, 564
BmeRI GACNNNNNGTC 1 cut(s) 145
BmeT110I CYCGRG 2 cut(s) 83, 143
BmiI GGNNCC 1 cut(s) 276
BmsI GCATC 1 cut(s) 723
BoxI GACNNNNGTC 1 cut(s) 166
BpiI GAAGAC 3 cut(s) 39, 54, 507
BplI GAGNNNNNCTC 2 cut(s) 77, 109
Bpu1102I GCTNAGC 1 cut(s) 801
Bpu14I TTCGAA 2 cut(s) 407, 713
BpuEI CTTGAG 1 cut(s) 149
BsaI GGTCTC 1 cut(s) 668
BsaJI CCNNGG 1 cut(s) 566
BsaWI WCCGGW 1 cut(s) 337
BsaXI ACNNNNNCTCC 2 cut(s) 20, 50
Bsc4I CCNNNNNNNGG 3 cut(s) 241, 344, 377
Bse118I RCCGGY 2 cut(s) 439, 575
Bse1I ACTGG 1 cut(s) 835
BseDI CCNNGG 1 cut(s) 566
BseGI GGATG 1 cut(s) 75
BseLI CCNNNNNNNGG 3 cut(s) 241, 344, 377
BseMII CTCAG 2 cut(s) 632, 771
BseNI ACTGG 1 cut(s) 835
BseRI GAGGAG 1 cut(s) 71
BseXI GCAGC 3 cut(s) 100, 343, 478
BshFI GGCC 1 cut(s) 443
BsiHKAI GWGCWC 1 cut(s) 690
BsiHKCI CYCGRG 2 cut(s) 83, 143
BsiSI CCGG 4 cut(s) 111, 338, 440, 576
BslFI GGGAC 1 cut(s) 133
BslI CCNNNNNNNGG 3 cut(s) 241, 344, 377
BsmAI GTCTC 2 cut(s) 396, 668
BsmBI CGTCTC 1 cut(s) 396
BsmFI GGGAC 1 cut(s) 133
BsnI GGCC 1 cut(s) 443
Bso31I GGTCTC 1 cut(s) 668
BsoBI CYCGRG 2 cut(s) 83, 143
Bsp119I TTCGAA 2 cut(s) 407, 713
Bsp1286I GDGCHC 1 cut(s) 690
Bsp143I GATC 1 cut(s) 765
Bsp1720I GCTNAGC 1 cut(s) 801
BspACI CCGC 8 cut(s) 39, 96, 151, 198, 205, 222, 232, 563
BspANI GGCC 1 cut(s) 443
BspCNI CTCAG 2 cut(s) 631, 772
BspLI GGNNCC 1 cut(s) 276
BspMAI CTGCAG 1 cut(s) 161
BspT104I TTCGAA 2 cut(s) 407, 713
BspTNI GGTCTC 1 cut(s) 668
BsrFI RCCGGY 2 cut(s) 439, 575
BsrI ACTGG 1 cut(s) 835
BssAI RCCGGY 2 cut(s) 439, 575
BssECI CCNNGG 1 cut(s) 566
BssMI GATC 1 cut(s) 765
Bst4CI ACNGT 1 cut(s) 294
Bst6I CTCTTC 1 cut(s) 753
BstBI TTCGAA 2 cut(s) 407, 713
BstDEI CTNAG 4 cut(s) 618, 780, 801, 848
BstF5I GGATG 1 cut(s) 75
BstKTI GATC 1 cut(s) 768
BstMAI GTCTC 2 cut(s) 396, 668
BstMBI GATC 1 cut(s) 765
BstPAI GACNNNNGTC 1 cut(s) 166
BstSFI CTRYAG 1 cut(s) 157
BstV1I GCAGC 3 cut(s) 100, 343, 478
BstV2I GAAGAC 3 cut(s) 39, 54, 507
BsuRI GGCC 1 cut(s) 443
BtgZI GCGATG 1 cut(s) 761
BtsCI GGATG 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 828
Cfr10I RCCGGY 2 cut(s) 439, 575
CviAII CATG 2 cut(s) 236, 377
DdeI CTNAG 4 cut(s) 618, 780, 801, 848
DpnI GATC 1 cut(s) 767
DpnII GATC 1 cut(s) 765
DriI GACNNNNNGTC 1 cut(s) 145
EaeI YGGCCR 1 cut(s) 441
Eam1104I CTCTTC 1 cut(s) 753
Eam1105I GACNNNNNGTC 1 cut(s) 145
EarI CTCTTC 1 cut(s) 753
EciI GGCGGA 3 cut(s) 28, 85, 221
Ecl136II GAGCTC 1 cut(s) 688
Eco24I GRGCYC 1 cut(s) 690
Eco31I GGTCTC 1 cut(s) 668
Eco53kI GAGCTC 1 cut(s) 688
Eco88I CYCGRG 2 cut(s) 83, 143
EcoICRI GAGCTC 1 cut(s) 688
EcoRI GAATTC 2 cut(s) 400, 409
EcoT38I GRGCYC 1 cut(s) 690
Esp3I CGTCTC 1 cut(s) 396
FaeI CATG 2 cut(s) 239, 380
FaiI YATR 3 cut(s) 237, 303, 378
FaqI GGGAC 1 cut(s) 133
FatI CATG 2 cut(s) 235, 376
FauI CCCGC 2 cut(s) 158, 212
Fnu4HI GCNGC 4 cut(s) 89, 357, 467, 563
FokI GGATG 1 cut(s) 62
FriOI GRGCYC 1 cut(s) 690
Fsp4HI GCNGC 4 cut(s) 89, 357, 467, 563
FspBI CTAG 1 cut(s) 816
GluI GCNGC 4 cut(s) 89, 357, 467, 563
HaeIII GGCC 1 cut(s) 443
HapII CCGG 4 cut(s) 111, 338, 440, 576
Hin1II CATG 2 cut(s) 239, 380
HindIII AAGCTT 1 cut(s) 706
HpaII CCGG 4 cut(s) 111, 338, 440, 576
HphI GGTGA 4 cut(s) 109, 172, 327, 429
Hpy188I TCNGA 6 cut(s) 22, 28, 285, 328, 621, 697
Hpy188III TCNNGA 1 cut(s) 419
Hpy99I CGWCG 4 cut(s) 32, 328, 680, 683
HpyAV CCTTC 3 cut(s) 567, 736, 745
HpyCH4III ACNGT 1 cut(s) 294
HpyCH4V TGCA 3 cut(s) 159, 428, 534
HpyF3I CTNAG 4 cut(s) 618, 780, 801, 848
Hsp92II CATG 2 cut(s) 239, 380
Kzo9I GATC 1 cut(s) 765
LmnI GCTCC 2 cut(s) 113, 693
Lsp1109I GCAGC 3 cut(s) 100, 343, 478
LweI GCATC 1 cut(s) 723
MaeI CTAG 1 cut(s) 816
MaeIII GTNAC 3 cut(s) 178, 306, 826
MalI GATC 1 cut(s) 767
MboI GATC 1 cut(s) 765
MboII GAAGA 8 cut(s) 44, 59, 396, 507, 606, 727, 770, 775
MhlI GDGCHC 1 cut(s) 690
MluCI AATT 6 cut(s) 400, 409, 429, 535, 667, 786
MlyI GAGTC 7 cut(s) 17, 29, 116, 155, 156, 314, 818
MmeI TCCRAC 3 cut(s) 45, 51, 306
MroXI GAANNNNTTC 1 cut(s) 709
MspI CCGG 4 cut(s) 111, 338, 440, 576
NdeII GATC 1 cut(s) 765
NlaIII CATG 2 cut(s) 239, 380
NlaIV GGNNCC 1 cut(s) 276
NmeAIII GCCGAG 1 cut(s) 591
NmuCI GTSAC 3 cut(s) 178, 306, 826
NspV TTCGAA 2 cut(s) 407, 713
PaeR7I CTCGAG 2 cut(s) 83, 143
PcsI WCGNNNNNNNCGW 2 cut(s) 395, 404
PdmI GAANNNNTTC 1 cut(s) 709
PfeI GAWTC 3 cut(s) 239, 320, 551
PflFI GACNNNGTC 1 cut(s) 125
PflMI CCANNNNNTGG 1 cut(s) 377
PkrI GCNGC 4 cut(s) 90, 358, 468, 564
PleI GAGTC 7 cut(s) 17, 29, 116, 154, 156, 313, 817
PpsI GAGTC 7 cut(s) 17, 29, 116, 154, 156, 313, 817
PshAI GACNNNNGTC 1 cut(s) 166
Psp124BI GAGCTC 1 cut(s) 690
PspN4I GGNNCC 1 cut(s) 276
PspXI VCTCGAGB 2 cut(s) 83, 143
PstI CTGCAG 1 cut(s) 161
PsyI GACNNNGTC 1 cut(s) 125
SacI GAGCTC 1 cut(s) 690
SatI GCNGC 4 cut(s) 89, 357, 467, 563
Sau3AI GATC 1 cut(s) 765
SchI GAGTC 7 cut(s) 17, 29, 116, 155, 156, 314, 818
SduI GDGCHC 1 cut(s) 690
SetI ASST 9 cut(s) 18, 54, 93, 144, 214, 276, 690, 710, 781
SfaNI GCATC 1 cut(s) 723
SfcI CTRYAG 1 cut(s) 157
Sfr274I CTCGAG 2 cut(s) 83, 143
SfuI TTCGAA 2 cut(s) 407, 713
SlaI CTCGAG 2 cut(s) 83, 143
SmlI CTYRAG 3 cut(s) 83, 143, 164
SmoI CTYRAG 3 cut(s) 83, 143, 164
Sse9I AATT 6 cut(s) 400, 409, 429, 535, 667, 786
SsiI CCGC 8 cut(s) 39, 96, 151, 198, 205, 222, 232, 563
SspMI CTAG 1 cut(s) 816
SstI GAGCTC 1 cut(s) 690
TaaI ACNGT 1 cut(s) 294
TaqI TCGA 9 cut(s) 84, 144, 398, 407, 479, 485, 491, 497, 713
TasI AATT 6 cut(s) 400, 409, 429, 535, 667, 786
TauI GCSGC 1 cut(s) 565
TfiI GAWTC 3 cut(s) 239, 320, 551
TscAI CASTG 1 cut(s) 835
TseFI GTSAC 3 cut(s) 178, 306, 826
TseI GCWGC 3 cut(s) 88, 356, 466
Tsp45I GTSAC 3 cut(s) 178, 306, 826
TspDTI ATGAA 4 cut(s) 402, 764, 836, 858
TspGWI ACGGA 2 cut(s) 115, 510
TspRI CASTG 1 cut(s) 835
Tth111I GACNNNGTC 1 cut(s) 125
Van91I CCANNNNNTGG 1 cut(s) 377
XapI RAATTY 2 cut(s) 400, 409
XhoI CTCGAG 2 cut(s) 83, 143
XmnI GAANNNNTTC 1 cut(s) 709
XspI CTAG 1 cut(s) 816
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.