Rroxscaffold_3G00245100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0012285
Physical Location & Seq
Forward (+)
37940534 .. 37941544
1011 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00245100.1

Sequence Viewer

Length: 1011 bp
ATGACAACGCCGGACCCACACGTTGAAACTTCACCCACAAAACGCCAAAATCAAGTGTGTAGCCGTTACTCTTCTTTTTCTTGTGCGGCCAAAAGCAGTAGGGCGGCTTCTACACTGAGCTCGCTCGCTCGCTCCCCAACTTTGACCGTCATGGATTTCTCCCACCTCTCCGACTCCGACGAAGACTCCGCCGTAGAAGACCTCCTATCCCAAGCCAAAGACCACATCCTCCTCGAGCAGCTCTCCGCCATCAACTGCTCCGGCTTCACTGACTCCGTCCTCCCCACCGACCTCGAGTCCCGCTTCTGCAGACTCAAGTCTTTCCCCGTCACCAAGCACAACACTACTGCCTCGCGCCCGCCTCAAACCACCGCTTCGTTCCGCCATGATTCGGTTCAGGCTGAAAACCCAGATGAGAAAAAGGTTCCTAATCCGAAATCACAGTCTGGGTATGAGTCACCGCCTTTGGAATCGTCCGAGTTTTCACCGGAAAAGGGAATGACGGCTGCGAAACCGAAACCGAAACATGGGTCGGTTTCGTCTCGCTCGAATTCTTCGAATTCATCTCCCGATAGTGCAAATTTCTCACCGGCCAAGAGAGTTTCAGGCAAGAAGCAGCGGTCTAAATCGAAATTGAAATCGAAATCAAAATCAGGGTGGTTGTCTTCTCCGCTGGGTTCTTGCAATTCGCTGAGAAGTGATTCTCCTTCGCCGCCGAGGAAAGCCGGTTGCTTCTGGTGTTCTCCAAAGACGAAGAGTGCTTCTTCTCAGAGAAAGAGCAAGGAAAATGGGGGCATTGGTGGTGGCCTTGGTCTCAATTTCAGCGACGACGATGAGCTCTTATCGGATTTGGGAAGCTTTTCGAAGAAAGAGCAGAGCAAGATGCTAAAGAAGGCAATGAAGGAGGAAGAGAAGATCAGTAGAGAAGCTGAGAAAATTGTGAAATGGGCTAAGCAAGAGTCGGCTAGAATGAATGTCACTGGTATTGATGATGAACTTAGTGATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

336

Amino Acids

36.44

Weight (kDa)

9.1

Isoelectric Point (pI)

62.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012285)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23270 AT1G31460
fragaria_vesca FvH4_5g24380
malus_domestica MD16G1288300.v1.1
prunus_persica Prupe.5G017000_v2.0.a1
pyrus_communis pycom16g25600
rosa_chinensis RchiOBHm_Chr7g0214771
rosa_laevigata RLG00000002723 RLG00000020760
rosa_multiflora Rmu_co8342721.1_g000001 Rmu_sc0002308.1_g000045 Rmu_sc0026107.1_g000001
rosa_roxburghii Rroxscaffold_3G00245100
rosa_rugosa Rorug06G0112700
rosa_samantha Rh7AG283900 Rh7BG274500 Rh7CG303300 Rh7DG287200
rosa_wichuraiana Rw7G024200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 355
AcoI YGGCCR 2 cut(s) 87, 591
AcsI RAATTY 3 cut(s) 550, 559, 580
AfiI CCNNNNNNNGG 3 cut(s) 391, 494, 527
AflIII ACRYGT 1 cut(s) 19
AgsI TTSAA 2 cut(s) 26, 637
AhdI GACNNNNNGTC 1 cut(s) 295
AluBI AGCT 5 cut(s) 120, 241, 838, 858, 929
AluI AGCT 5 cut(s) 120, 241, 838, 858, 929
Alw21I GWGCWC 2 cut(s) 122, 840
Alw26I GTCTC 2 cut(s) 546, 818
Ama87I CYCGRG 2 cut(s) 233, 293
AoxI GGCC 3 cut(s) 87, 591, 805
ApeKI GCWGC 3 cut(s) 238, 506, 616
ApoI RAATTY 3 cut(s) 550, 559, 580
ArsI GACNNNNNNTTYG 4 cut(s) 428, 460, 515, 547
Asp700I GAANNNNTTC 2 cut(s) 700, 859
AspLEI GCGC 1 cut(s) 357
AspS9I GGNCC 1 cut(s) 13
AsuHPI GGTGA 5 cut(s) 24, 322, 450, 477, 579
AsuII TTCGAA 2 cut(s) 557, 863
AvaI CYCGRG 2 cut(s) 233, 293
AvaII GGWCC 1 cut(s) 13
BanII GRGCYC 2 cut(s) 122, 840
BarI GAAGNNNNNNTAC 2 cut(s) 91, 123
BbsI GAAGAC 3 cut(s) 189, 204, 657
Bbv12I GWGCWC 2 cut(s) 122, 840
BbvI GCAGC 3 cut(s) 250, 493, 628
BccI CCATC 1 cut(s) 257
BceAI ACGGC 3 cut(s) 48, 176, 519
BcoDI GTCTC 2 cut(s) 546, 818
BfaI CTAG 1 cut(s) 966
BfmI CTRYAG 1 cut(s) 307
BisI GCNGC 6 cut(s) 87, 105, 239, 507, 617, 713
BlpI GCTNAGC 1 cut(s) 951
BlsI GCNGC 6 cut(s) 88, 106, 240, 508, 618, 714
Bme18I GGWCC 1 cut(s) 13
BmeRI GACNNNNNGTC 1 cut(s) 295
BmeT110I CYCGRG 2 cut(s) 233, 293
BmgT120I GGNCC 1 cut(s) 13
BmiI GGNNCC 2 cut(s) 15, 426
BmsI GCATC 1 cut(s) 873
BoxI GACNNNNGTC 1 cut(s) 316
BpiI GAAGAC 3 cut(s) 189, 204, 657
BplI GAGNNNNNCTC 2 cut(s) 227, 259
Bpu1102I GCTNAGC 1 cut(s) 951
Bpu14I TTCGAA 2 cut(s) 557, 863
BpuEI CTTGAG 1 cut(s) 299
BsaI GGTCTC 1 cut(s) 818
BsaJI CCNNGG 2 cut(s) 716, 808
BsaWI WCCGGW 1 cut(s) 487
BsaXI ACNNNNNCTCC 2 cut(s) 170, 200
Bsc4I CCNNNNNNNGG 3 cut(s) 391, 494, 527
Bse118I RCCGGY 2 cut(s) 589, 725
Bse1I ACTGG 1 cut(s) 985
Bse3DI GCAATG 1 cut(s) 903
BseDI CCNNGG 2 cut(s) 716, 808
BseGI GGATG 1 cut(s) 225
BseLI CCNNNNNNNGG 3 cut(s) 391, 494, 527
BseMI GCAATG 1 cut(s) 903
BseMII CTCAG 4 cut(s) 107, 683, 782, 921
BseNI ACTGG 1 cut(s) 985
BseRI GAGGAG 1 cut(s) 221
BseXI GCAGC 3 cut(s) 250, 493, 628
BseYI CCCAGC 1 cut(s) 673
Bsh1236I CGCG 1 cut(s) 355
BshFI GGCC 3 cut(s) 89, 593, 807
BsiHKAI GWGCWC 2 cut(s) 122, 840
BsiHKCI CYCGRG 2 cut(s) 233, 293
BsiSI CCGG 5 cut(s) 11, 261, 488, 590, 726
BslFI GGGAC 1 cut(s) 283
BslI CCNNNNNNNGG 3 cut(s) 391, 494, 527
BsmAI GTCTC 2 cut(s) 546, 818
BsmBI CGTCTC 1 cut(s) 546
BsmFI GGGAC 1 cut(s) 283
BsnI GGCC 3 cut(s) 89, 593, 807
Bso31I GGTCTC 1 cut(s) 818
BsoBI CYCGRG 2 cut(s) 233, 293
Bsp119I TTCGAA 2 cut(s) 557, 863
Bsp1286I GDGCHC 2 cut(s) 122, 840
Bsp143I GATC 1 cut(s) 915
Bsp1720I GCTNAGC 1 cut(s) 951
BspANI GGCC 3 cut(s) 89, 593, 807
BspCNI CTCAG 4 cut(s) 108, 684, 781, 922
BspFNI CGCG 1 cut(s) 355
BspLI GGNNCC 2 cut(s) 15, 426
BspMAI CTGCAG 1 cut(s) 311
BspT104I TTCGAA 2 cut(s) 557, 863
BspTNI GGTCTC 1 cut(s) 818
BsrDI GCAATG 1 cut(s) 903
BsrFI RCCGGY 2 cut(s) 589, 725
BsrI ACTGG 1 cut(s) 985
BssAI RCCGGY 2 cut(s) 589, 725
BssECI CCNNGG 2 cut(s) 716, 808
BssMI GATC 1 cut(s) 915
BssT1I CCWWGG 1 cut(s) 808
Bst4CI ACNGT 2 cut(s) 148, 444
Bst6I CTCTTC 3 cut(s) 76, 749, 903
BstBI TTCGAA 2 cut(s) 557, 863
BstC8I GCNNGC 4 cut(s) 122, 126, 130, 359
BstDEI CTNAG 6 cut(s) 116, 692, 768, 930, 951, 998
BstF5I GGATG 1 cut(s) 225
BstFNI CGCG 1 cut(s) 355
BstHHI GCGC 1 cut(s) 357
BstKTI GATC 1 cut(s) 918
BstMAI GTCTC 2 cut(s) 546, 818
BstMBI GATC 1 cut(s) 915
BstPAI GACNNNNGTC 1 cut(s) 316
BstSFI CTRYAG 1 cut(s) 307
BstUI CGCG 1 cut(s) 355
BstV1I GCAGC 3 cut(s) 250, 493, 628
BstV2I GAAGAC 3 cut(s) 189, 204, 657
BsuRI GGCC 3 cut(s) 89, 593, 807
BtsCI GGATG 1 cut(s) 225
BtsIMutI CAGTG 3 cut(s) 113, 267, 978
Cac8I GCNNGC 4 cut(s) 122, 126, 130, 359
CfoI GCGC 1 cut(s) 357
Cfr10I RCCGGY 2 cut(s) 589, 725
Cfr13I GGNCC 1 cut(s) 13
CviAII CATG 3 cut(s) 151, 386, 527
DdeI CTNAG 6 cut(s) 116, 692, 768, 930, 951, 998
DpnI GATC 1 cut(s) 917
DpnII GATC 1 cut(s) 915
DriI GACNNNNNGTC 1 cut(s) 295
EaeI YGGCCR 2 cut(s) 87, 591
Eam1104I CTCTTC 3 cut(s) 76, 749, 903
Eam1105I GACNNNNNGTC 1 cut(s) 295
EarI CTCTTC 3 cut(s) 76, 749, 903
EciI GGCGGA 3 cut(s) 178, 235, 371
Ecl136II GAGCTC 2 cut(s) 120, 838
Eco130I CCWWGG 1 cut(s) 808
Eco24I GRGCYC 2 cut(s) 122, 840
Eco31I GGTCTC 1 cut(s) 818
Eco47I GGWCC 1 cut(s) 13
Eco53kI GAGCTC 2 cut(s) 120, 838
Eco88I CYCGRG 2 cut(s) 233, 293
EcoICRI GAGCTC 2 cut(s) 120, 838
EcoRI GAATTC 2 cut(s) 550, 559
EcoT14I CCWWGG 1 cut(s) 808
EcoT38I GRGCYC 2 cut(s) 122, 840
ErhI CCWWGG 1 cut(s) 808
Esp3I CGTCTC 1 cut(s) 546
FaeI CATG 3 cut(s) 154, 389, 530
FaiI YATR 4 cut(s) 152, 387, 453, 528
FaqI GGGAC 1 cut(s) 283
FatI CATG 3 cut(s) 150, 385, 526
FauI CCCGC 2 cut(s) 308, 366
Fnu4HI GCNGC 6 cut(s) 87, 105, 239, 507, 617, 713
FokI GGATG 1 cut(s) 212
FriOI GRGCYC 2 cut(s) 122, 840
Fsp4HI GCNGC 6 cut(s) 87, 105, 239, 507, 617, 713
FspBI CTAG 1 cut(s) 966
GlaI GCGC 1 cut(s) 356
GluI GCNGC 6 cut(s) 87, 105, 239, 507, 617, 713
GsaI CCCAGC 1 cut(s) 677
HaeIII GGCC 3 cut(s) 89, 593, 807
HapII CCGG 5 cut(s) 11, 261, 488, 590, 726
HhaI GCGC 1 cut(s) 357
Hin1II CATG 3 cut(s) 154, 389, 530
Hin6I GCGC 1 cut(s) 355
HinP1I GCGC 1 cut(s) 355
HindIII AAGCTT 1 cut(s) 856
HpaII CCGG 5 cut(s) 11, 261, 488, 590, 726
HphI GGTGA 5 cut(s) 24, 322, 450, 477, 579
Hpy188I TCNGA 6 cut(s) 172, 178, 435, 478, 771, 847
Hpy188III TCNNGA 1 cut(s) 569
Hpy99I CGWCG 3 cut(s) 182, 830, 833
HpyAV CCTTC 3 cut(s) 717, 886, 895
HpyCH4III ACNGT 2 cut(s) 148, 444
HpyCH4IV ACGT 1 cut(s) 21
HpyCH4V TGCA 3 cut(s) 309, 578, 684
HpyF3I CTNAG 6 cut(s) 116, 692, 768, 930, 951, 998
HpySE526I ACGT 1 cut(s) 21
Hsp92II CATG 3 cut(s) 154, 389, 530
HspAI GCGC 1 cut(s) 355
Kzo9I GATC 1 cut(s) 915
LmnI GCTCC 2 cut(s) 137, 263
Lsp1109I GCAGC 3 cut(s) 250, 493, 628
LweI GCATC 1 cut(s) 873
MaeI CTAG 1 cut(s) 966
MaeII ACGT 1 cut(s) 21
MaeIII GTNAC 4 cut(s) 65, 328, 456, 976
MalI GATC 1 cut(s) 917
MboI GATC 1 cut(s) 915
MhlI GDGCHC 2 cut(s) 122, 840
MluCI AATT 7 cut(s) 550, 559, 580, 632, 685, 817, 936
MlyI GAGTC 7 cut(s) 167, 179, 266, 305, 306, 464, 968
MmeI TCCRAC 2 cut(s) 195, 201
MroXI GAANNNNTTC 2 cut(s) 700, 859
MspA1I CMGCKG 2 cut(s) 619, 673
MspI CCGG 5 cut(s) 11, 261, 488, 590, 726
MvnI CGCG 1 cut(s) 355
NdeII GATC 1 cut(s) 915
NlaIII CATG 3 cut(s) 154, 389, 530
NlaIV GGNNCC 2 cut(s) 15, 426
NmeAIII GCCGAG 1 cut(s) 741
NmuCI GTSAC 3 cut(s) 328, 456, 976
NspV TTCGAA 2 cut(s) 557, 863
PaeR7I CTCGAG 2 cut(s) 233, 293
PcsI WCGNNNNNNNCGW 2 cut(s) 545, 554
PdmI GAANNNNTTC 2 cut(s) 700, 859
PfeI GAWTC 3 cut(s) 389, 470, 701
PflFI GACNNNGTC 1 cut(s) 275
PkrI GCNGC 6 cut(s) 88, 106, 240, 508, 618, 714
PleI GAGTC 7 cut(s) 167, 179, 266, 304, 306, 463, 967
PpsI GAGTC 7 cut(s) 167, 179, 266, 304, 306, 463, 967
PshAI GACNNNNGTC 1 cut(s) 316
Psp124BI GAGCTC 2 cut(s) 122, 840
PspFI CCCAGC 1 cut(s) 673
PspN4I GGNNCC 2 cut(s) 15, 426
PspPI GGNCC 1 cut(s) 13
PspXI VCTCGAGB 2 cut(s) 233, 293
PstI CTGCAG 1 cut(s) 311
PsyI GACNNNGTC 1 cut(s) 275
SacI GAGCTC 2 cut(s) 122, 840
SatI GCNGC 6 cut(s) 87, 105, 239, 507, 617, 713
Sau3AI GATC 1 cut(s) 915
Sau96I GGNCC 1 cut(s) 13
SchI GAGTC 7 cut(s) 167, 179, 266, 305, 306, 464, 968
SduI GDGCHC 2 cut(s) 122, 840
SfaNI GCATC 1 cut(s) 873
SfcI CTRYAG 1 cut(s) 307
Sfr274I CTCGAG 2 cut(s) 233, 293
SfuI TTCGAA 2 cut(s) 557, 863
SinI GGWCC 1 cut(s) 13
SlaI CTCGAG 2 cut(s) 233, 293
SmlI CTYRAG 3 cut(s) 233, 293, 314
SmoI CTYRAG 3 cut(s) 233, 293, 314
Sse9I AATT 7 cut(s) 550, 559, 580, 632, 685, 817, 936
SspMI CTAG 1 cut(s) 966
SstI GAGCTC 2 cut(s) 122, 840
StyI CCWWGG 1 cut(s) 808
TaaI ACNGT 2 cut(s) 148, 444
TaiI ACGT 1 cut(s) 24
TaqI TCGA 7 cut(s) 234, 294, 548, 557, 629, 641, 863
TasI AATT 7 cut(s) 550, 559, 580, 632, 685, 817, 936
TauI GCSGC 3 cut(s) 89, 107, 715
TfiI GAWTC 3 cut(s) 389, 470, 701
TscAI CASTG 3 cut(s) 120, 274, 985
TseFI GTSAC 3 cut(s) 328, 456, 976
TseI GCWGC 3 cut(s) 238, 506, 616
Tsp45I GTSAC 3 cut(s) 328, 456, 976
TspDTI ATGAA 4 cut(s) 552, 914, 986, 1008
TspGWI ACGGA 1 cut(s) 265
TspRI CASTG 3 cut(s) 120, 274, 985
Tth111I GACNNNGTC 1 cut(s) 275
VpaK11BI GGWCC 1 cut(s) 13
XapI RAATTY 3 cut(s) 550, 559, 580
XhoI CTCGAG 2 cut(s) 233, 293
XmnI GAANNNNTTC 2 cut(s) 700, 859
XspI CTAG 1 cut(s) 966
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.