RLG00000002723

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0012285
Physical Location & Seq
Forward (+)
38616942 .. 38617808
867 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002723

Sequence Viewer

Length: 867 bp
ATGGATTTCTCCCACCTCTCCGACTCCGACGAAGACTCCGCCGTAGAAGACCTCCTATCCCAAGCCAAAGACCACATCCTCCTCGAGCAGCTCTCCGCCATCAACTGCTCCGGCTTCACCGACTCCGTCCTCCCCACCGACCTCGAGTCCCGCTTCTGCAGACTCAAGTCTTTCCCGGTCACCAAGCACAACACCACCAACTCGCGCCCACCTCAAACCACCGCTTCGTTCCGCCATGATTCGGTTCAGGCGGAAAACCCAGATGAGAAAAAGGTTCCTAATCCGACATCGCAGTCTGGGTATGAGTCACCGCCTCTGGAATCGTCGGAGTTTTCACCGGAAAAGGGAATGACGGGTGCGAAACCGAAACCAAAACATGGGTCGGTTTCGTCTCGCTCGAATTCTTCGAACTCATCTCCCGACAGTGCAATTTTCTCACCGGCCAAGAGAGTTTCAGGCAAGAAGCAGCGTTCTAAATCGAAATTGAAATCGAAATCGAAATCAAAATCTGGGTGGTTGTCTTCTCCGTTGGGTTCTTGCAATTCTTTGAGGAATGATTCTCCTTCGCCGCCGAGGAAAGCCGGTTGCTTCTGGTGTTCTCCAAAGACAAAGAGTGCTTCTTGTCAGAGAAAGAGCAAGGAAAATGGGGGTGTTGGTGGTGGGCTTGGTCTCTATTTCAGCGACGACGATGAGCTCTTGTCGGATTTGGGAAGCTTTTCGAAGAAAGAGCAGAGCAAGATGCTAAAGAAGGCGATGAAGGAGGAAGAGAAGATCAGTAGAGAAGCTGAGAAAATTGTCAAGTGGGCTAAGCAAGAGTCGGCTAGAATGAATGTCACTGGTATTGATGATGAACTTAGTGATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

289

Amino Acids

31.4

Weight (kDa)

8.75

Isoelectric Point (pI)

59.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012285)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23270 AT1G31460
fragaria_vesca FvH4_5g24380
malus_domestica MD16G1288300.v1.1
prunus_persica Prupe.5G017000_v2.0.a1
pyrus_communis pycom16g25600
rosa_chinensis RchiOBHm_Chr7g0214771
rosa_laevigata RLG00000002723 RLG00000020760
rosa_multiflora Rmu_co8342721.1_g000001 Rmu_sc0002308.1_g000045 Rmu_sc0026107.1_g000001
rosa_roxburghii Rroxscaffold_3G00245100
rosa_rugosa Rorug06G0112700
rosa_samantha Rh7AG283900 Rh7BG274500 Rh7CG303300 Rh7DG287200
rosa_wichuraiana Rw7G024200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 292
AccB7I CCANNNNNTGG 1 cut(s) 377
AccII CGCG 1 cut(s) 205
AciI CCGC 8 cut(s) 39, 96, 151, 222, 232, 251, 311, 569
AcoI YGGCCR 1 cut(s) 441
AcsI RAATTY 1 cut(s) 400
AfiI CCNNNNNNNGG 3 cut(s) 241, 344, 377
AgsI TTSAA 1 cut(s) 487
AhdI GACNNNNNGTC 1 cut(s) 145
AluBI AGCT 4 cut(s) 91, 694, 714, 785
AluI AGCT 4 cut(s) 91, 694, 714, 785
Alw21I GWGCWC 1 cut(s) 696
Alw26I GTCTC 2 cut(s) 396, 674
Ama87I CYCGRG 2 cut(s) 83, 143
AoxI GGCC 1 cut(s) 441
ApeKI GCWGC 2 cut(s) 88, 466
ApoI RAATTY 1 cut(s) 400
ArsI GACNNNNNNTTYG 2 cut(s) 365, 397
Asp700I GAANNNNTTC 1 cut(s) 715
AspLEI GCGC 1 cut(s) 207
AsuC2I CCSGG 1 cut(s) 176
AsuHPI GGTGA 5 cut(s) 109, 172, 300, 327, 429
AsuII TTCGAA 2 cut(s) 407, 719
AvaI CYCGRG 2 cut(s) 83, 143
BanII GRGCYC 1 cut(s) 696
BbsI GAAGAC 3 cut(s) 39, 54, 513
Bbv12I GWGCWC 1 cut(s) 696
BbvI GCAGC 2 cut(s) 100, 478
BccI CCATC 1 cut(s) 107
BceAI ACGGC 1 cut(s) 26
BcnI CCSGG 1 cut(s) 176
BcoDI GTCTC 2 cut(s) 396, 674
BfaI CTAG 1 cut(s) 822
BfmI CTRYAG 1 cut(s) 157
BisI GCNGC 3 cut(s) 89, 467, 569
BlpI GCTNAGC 1 cut(s) 807
BlsI GCNGC 3 cut(s) 90, 468, 570
Bme1390I CCNGG 1 cut(s) 176
BmeRI GACNNNNNGTC 1 cut(s) 145
BmeT110I CYCGRG 2 cut(s) 83, 143
BmiI GGNNCC 1 cut(s) 276
BmrFI CCNGG 1 cut(s) 176
BmsI GCATC 1 cut(s) 729
BoxI GACNNNNGTC 1 cut(s) 166
BpiI GAAGAC 3 cut(s) 39, 54, 513
BplI GAGNNNNNCTC 2 cut(s) 77, 109
Bpu1102I GCTNAGC 1 cut(s) 807
Bpu14I TTCGAA 2 cut(s) 407, 719
BpuEI CTTGAG 1 cut(s) 149
BpuMI CCSGG 1 cut(s) 176
BsaI GGTCTC 1 cut(s) 674
BsaJI CCNNGG 1 cut(s) 572
BsaWI WCCGGW 1 cut(s) 337
BsaXI ACNNNNNCTCC 2 cut(s) 20, 50
Bsc4I CCNNNNNNNGG 3 cut(s) 241, 344, 377
Bse118I RCCGGY 2 cut(s) 439, 581
Bse1I ACTGG 1 cut(s) 841
BseDI CCNNGG 1 cut(s) 572
BseGI GGATG 1 cut(s) 75
BseLI CCNNNNNNNGG 3 cut(s) 241, 344, 377
BseMII CTCAG 1 cut(s) 777
BseNI ACTGG 1 cut(s) 841
BseRI GAGGAG 1 cut(s) 71
BseXI GCAGC 2 cut(s) 100, 478
Bsh1236I CGCG 1 cut(s) 205
BshFI GGCC 1 cut(s) 443
BsiHKAI GWGCWC 1 cut(s) 696
BsiHKCI CYCGRG 2 cut(s) 83, 143
BsiSI CCGG 5 cut(s) 111, 176, 338, 440, 582
BslFI GGGAC 1 cut(s) 133
BslI CCNNNNNNNGG 3 cut(s) 241, 344, 377
BsmAI GTCTC 2 cut(s) 396, 674
BsmBI CGTCTC 1 cut(s) 396
BsmFI GGGAC 1 cut(s) 133
BsnI GGCC 1 cut(s) 443
Bso31I GGTCTC 1 cut(s) 674
BsoBI CYCGRG 2 cut(s) 83, 143
Bsp119I TTCGAA 2 cut(s) 407, 719
Bsp1286I GDGCHC 1 cut(s) 696
Bsp143I GATC 1 cut(s) 771
Bsp1720I GCTNAGC 1 cut(s) 807
BspACI CCGC 8 cut(s) 39, 96, 151, 222, 232, 251, 311, 569
BspANI GGCC 1 cut(s) 443
BspCNI CTCAG 1 cut(s) 778
BspFNI CGCG 1 cut(s) 205
BspLI GGNNCC 1 cut(s) 276
BspMAI CTGCAG 1 cut(s) 161
BspT104I TTCGAA 2 cut(s) 407, 719
BspTNI GGTCTC 1 cut(s) 674
BsrFI RCCGGY 2 cut(s) 439, 581
BsrI ACTGG 1 cut(s) 841
BssAI RCCGGY 2 cut(s) 439, 581
BssECI CCNNGG 1 cut(s) 572
BssMI GATC 1 cut(s) 771
Bst4CI ACNGT 1 cut(s) 425
Bst6I CTCTTC 1 cut(s) 759
BstBI TTCGAA 2 cut(s) 407, 719
BstDEI CTNAG 3 cut(s) 786, 807, 854
BstEII GGTNACC 1 cut(s) 178
BstF5I GGATG 1 cut(s) 75
BstFNI CGCG 1 cut(s) 205
BstHHI GCGC 1 cut(s) 207
BstKTI GATC 1 cut(s) 774
BstMAI GTCTC 2 cut(s) 396, 674
BstMBI GATC 1 cut(s) 771
BstPAI GACNNNNGTC 1 cut(s) 166
BstPI GGTNACC 1 cut(s) 178
BstSCI CCNGG 1 cut(s) 174
BstSFI CTRYAG 1 cut(s) 157
BstUI CGCG 1 cut(s) 205
BstV1I GCAGC 2 cut(s) 100, 478
BstV2I GAAGAC 3 cut(s) 39, 54, 513
BsuRI GGCC 1 cut(s) 443
BtgZI GCGATG 2 cut(s) 273, 767
BtsCI GGATG 1 cut(s) 75
BtsIMutI CAGTG 2 cut(s) 430, 834
CfoI GCGC 1 cut(s) 207
Cfr10I RCCGGY 2 cut(s) 439, 581
CviAII CATG 2 cut(s) 236, 377
DdeI CTNAG 3 cut(s) 786, 807, 854
DpnI GATC 1 cut(s) 773
DpnII GATC 1 cut(s) 771
DrdI GACNNNNNNGTC 1 cut(s) 292
DriI GACNNNNNGTC 1 cut(s) 145
DseDI GACNNNNNNGTC 1 cut(s) 292
EaeI YGGCCR 1 cut(s) 441
Eam1104I CTCTTC 1 cut(s) 759
Eam1105I GACNNNNNGTC 1 cut(s) 145
EarI CTCTTC 1 cut(s) 759
EciI GGCGGA 4 cut(s) 28, 85, 221, 266
Ecl136II GAGCTC 1 cut(s) 694
Eco24I GRGCYC 1 cut(s) 696
Eco31I GGTCTC 1 cut(s) 674
Eco53kI GAGCTC 1 cut(s) 694
Eco88I CYCGRG 2 cut(s) 83, 143
Eco91I GGTNACC 1 cut(s) 178
EcoICRI GAGCTC 1 cut(s) 694
EcoO65I GGTNACC 1 cut(s) 178
EcoRI GAATTC 1 cut(s) 400
EcoT38I GRGCYC 1 cut(s) 696
Esp3I CGTCTC 1 cut(s) 396
FaeI CATG 2 cut(s) 239, 380
FaiI YATR 3 cut(s) 237, 303, 378
FaqI GGGAC 1 cut(s) 133
FatI CATG 2 cut(s) 235, 376
FauI CCCGC 1 cut(s) 158
Fnu4HI GCNGC 3 cut(s) 89, 467, 569
FokI GGATG 1 cut(s) 62
FriOI GRGCYC 1 cut(s) 696
Fsp4HI GCNGC 3 cut(s) 89, 467, 569
FspBI CTAG 1 cut(s) 822
GlaI GCGC 1 cut(s) 206
GluI GCNGC 3 cut(s) 89, 467, 569
HaeIII GGCC 1 cut(s) 443
HapII CCGG 5 cut(s) 111, 176, 338, 440, 582
HhaI GCGC 1 cut(s) 207
Hin1II CATG 2 cut(s) 239, 380
Hin6I GCGC 1 cut(s) 205
HinP1I GCGC 1 cut(s) 205
HindIII AAGCTT 1 cut(s) 712
HpaII CCGG 5 cut(s) 111, 176, 338, 440, 582
HphI GGTGA 5 cut(s) 109, 172, 300, 327, 429
Hpy188I TCNGA 6 cut(s) 22, 28, 285, 328, 627, 703
Hpy188III TCNNGA 2 cut(s) 317, 419
Hpy99I CGWCG 4 cut(s) 32, 328, 686, 689
HpyAV CCTTC 3 cut(s) 573, 742, 751
HpyCH4III ACNGT 1 cut(s) 425
HpyCH4V TGCA 3 cut(s) 159, 428, 540
HpyF3I CTNAG 3 cut(s) 786, 807, 854
Hsp92II CATG 2 cut(s) 239, 380
HspAI GCGC 1 cut(s) 205
Kzo9I GATC 1 cut(s) 771
LmnI GCTCC 1 cut(s) 113
Lsp1109I GCAGC 2 cut(s) 100, 478
LweI GCATC 1 cut(s) 729
MaeI CTAG 1 cut(s) 822
MaeIII GTNAC 3 cut(s) 178, 306, 832
MalI GATC 1 cut(s) 773
MboI GATC 1 cut(s) 771
MboII GAAGA 7 cut(s) 44, 59, 396, 513, 733, 776, 781
MhlI GDGCHC 1 cut(s) 696
MluCI AATT 5 cut(s) 400, 429, 482, 541, 792
MlyI GAGTC 7 cut(s) 17, 29, 116, 155, 156, 314, 824
MmeI TCCRAC 5 cut(s) 45, 51, 306, 308, 681
MroXI GAANNNNTTC 1 cut(s) 715
MspI CCGG 5 cut(s) 111, 176, 338, 440, 582
MspR9I CCNGG 1 cut(s) 176
MvnI CGCG 1 cut(s) 205
NciI CCSGG 1 cut(s) 176
NdeII GATC 1 cut(s) 771
NlaIII CATG 2 cut(s) 239, 380
NlaIV GGNNCC 1 cut(s) 276
NmeAIII GCCGAG 1 cut(s) 597
NmuCI GTSAC 3 cut(s) 178, 306, 832
NspV TTCGAA 2 cut(s) 407, 719
PaeR7I CTCGAG 2 cut(s) 83, 143
PcsI WCGNNNNNNNCGW 2 cut(s) 395, 404
PdmI GAANNNNTTC 1 cut(s) 715
PfeI GAWTC 3 cut(s) 239, 320, 557
PflFI GACNNNGTC 1 cut(s) 125
PflMI CCANNNNNTGG 1 cut(s) 377
PkrI GCNGC 3 cut(s) 90, 468, 570
PleI GAGTC 7 cut(s) 17, 29, 116, 154, 156, 313, 823
PpsI GAGTC 7 cut(s) 17, 29, 116, 154, 156, 313, 823
PshAI GACNNNNGTC 1 cut(s) 166
Psp124BI GAGCTC 1 cut(s) 696
PspEI GGTNACC 1 cut(s) 178
PspN4I GGNNCC 1 cut(s) 276
PspXI VCTCGAGB 2 cut(s) 83, 143
PstI CTGCAG 1 cut(s) 161
PsyI GACNNNGTC 1 cut(s) 125
SacI GAGCTC 1 cut(s) 696
SatI GCNGC 3 cut(s) 89, 467, 569
Sau3AI GATC 1 cut(s) 771
SchI GAGTC 7 cut(s) 17, 29, 116, 155, 156, 314, 824
ScrFI CCNGG 1 cut(s) 176
SduI GDGCHC 1 cut(s) 696
SetI ASST 9 cut(s) 18, 54, 93, 144, 214, 276, 696, 716, 787
SfaNI GCATC 1 cut(s) 729
SfcI CTRYAG 1 cut(s) 157
Sfr274I CTCGAG 2 cut(s) 83, 143
SfuI TTCGAA 2 cut(s) 407, 719
SlaI CTCGAG 2 cut(s) 83, 143
SmlI CTYRAG 3 cut(s) 83, 143, 164
SmoI CTYRAG 3 cut(s) 83, 143, 164
Sse9I AATT 5 cut(s) 400, 429, 482, 541, 792
SsiI CCGC 8 cut(s) 39, 96, 151, 222, 232, 251, 311, 569
SspMI CTAG 1 cut(s) 822
SstI GAGCTC 1 cut(s) 696
StyD4I CCNGG 1 cut(s) 174
TaaI ACNGT 1 cut(s) 425
TaqI TCGA 8 cut(s) 84, 144, 398, 407, 479, 491, 497, 719
TasI AATT 5 cut(s) 400, 429, 482, 541, 792
TauI GCSGC 1 cut(s) 571
TfiI GAWTC 3 cut(s) 239, 320, 557
TscAI CASTG 2 cut(s) 430, 841
TseFI GTSAC 3 cut(s) 178, 306, 832
TseI GCWGC 2 cut(s) 88, 466
Tsp45I GTSAC 3 cut(s) 178, 306, 832
TspDTI ATGAA 3 cut(s) 770, 842, 864
TspGWI ACGGA 2 cut(s) 115, 516
TspRI CASTG 2 cut(s) 430, 841
Tth111I GACNNNGTC 1 cut(s) 125
Van91I CCANNNNNTGG 1 cut(s) 377
XapI RAATTY 1 cut(s) 400
XhoI CTCGAG 2 cut(s) 83, 143
XmnI GAANNNNTTC 1 cut(s) 715
XspI CTAG 1 cut(s) 822
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.