Rorug06G0112700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0012285
Physical Location & Seq
Forward (+)
15342523 .. 15344199
1677 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0112700.1

Sequence Viewer

Length: 1188 bp
ATGGGCGGCGGTGTTGAAGCAAAGCCAGAGAGAGGACGAACCGGTTTGGAGCGACAGACTAAGAATCACAGGGCTGTTCCCACCAATGCCGAACCAAGGCCAACTGACGCCTGGAAGGGTTTTAAAGACTCGTTCAGATGGAATCAGGCGGATTTCAAAGATGACAAAAACTTGCAACGCATCGAAGCCAAACTCAGGTCCAGCGCCAAACAAGTAGTCATCCACAGTACCGGTCCTGATGGGTTATTTAAGCAATTGCGGCCATGCCTACAGATTCTGACGGATTCCAAGGGGTTAATCTTGTCATGCAAAAAACAGATACTTGAGGCGCAGGTGATGAAGGTGAAGAAGGCGAATGAGAATCTCTTAGATGATTTGATCGACGAGTACATGAGCAATAGCTTGCTGATGCTTCAACTCTGCAATGAATTGCAACACTTCATCAAGTCGGCTCGTAAGGTCGATTCAAGCATTACAGATGTGCTTAACAGGGGAGTGTCGAAGTCGAATAAGCTCAGCGAGTCTGTGAAGAAGTATAAGTGTTCTGAAAAAGCAATTATTGCAAAGGTGAAGTCTCTGCGCCAGCAACACAGAAACATGCTTGTCAAGTTGAAAGATCGAATTAAGAACTTTGATAAGGAGCTGAAGCTTGCTCGTACTTTAAAGAAGGTAGTAAATGTGGTGTTCGTAGGTATGTTGTCTGGTATGTTTGTTTGCACCGTCATGGCGGCGGCTATGGCTGCTCCGCCAGTTGCAGCGGCCTTGACCGCTCATCCATGTATTGCCGGAGTTATTGCTGGTGGTGCCGTTGGTTATGCTTTTTCGCCGGTATTAAAAGAGGGAGAACACTGGCTTCTCACCTTGATTCAAGTTTATGAATCAACTCTGGAGGCACATAAGGGTGTAACTCGGTTGATGGAAGCCGGAACCCGAGGCGCCATTAAAGAGTTGGATGACATCATGCGTCATGTTAAGAAGGTCATTGCAACGGGGAATGGTCTAGTGTCGTCCAATTTAAGCGCAAGGAGAAAGAATATTATAAAAAAGCAGGGAGAGTTTCGCAGAGAAATTGAGAAATTGGAAGAGAAAAGAAAGCACTGCCGCAAGGTTATAGAGACGGACAGGGAAAAGGTTCGCACGGAATATGACGAATTGAAGAGGAGCCCAGTGTGGAATTCTAATTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

395

Amino Acids

44.4

Weight (kDa)

9.83

Isoelectric Point (pI)

41.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF677 PF05055 107 - 377 1.4e-17 Protein of unknown function (DUF677)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012285)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23270 AT1G31460
fragaria_vesca FvH4_5g24380
malus_domestica MD16G1288300.v1.1
prunus_persica Prupe.5G017000_v2.0.a1
pyrus_communis pycom16g25600
rosa_chinensis RchiOBHm_Chr7g0214771
rosa_laevigata RLG00000002723 RLG00000020760
rosa_multiflora Rmu_co8342721.1_g000001 Rmu_sc0002308.1_g000045 Rmu_sc0026107.1_g000001
rosa_roxburghii Rroxscaffold_3G00245100
rosa_rugosa Rorug06G0112700
rosa_samantha Rh7AG283900 Rh7BG274500 Rh7CG303300 Rh7DG287200
rosa_wichuraiana Rw7G024200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1040
AarI CACCTGC 1 cut(s) 322
Acc36I ACCTGC 1 cut(s) 322
AccB1I GGYRCC 2 cut(s) 803, 935
AccBSI CCGCTC 1 cut(s) 770
AcoI YGGCCR 1 cut(s) 260
AcsI RAATTY 1 cut(s) 1174
AcuI CTGAAG 1 cut(s) 665
AcyI GRCGYC 2 cut(s) 108, 936
AfaI GTAC 3 cut(s) 229, 389, 658
AfiI CCNNNNNNNGG 3 cut(s) 32, 96, 195
AgeI ACCGGT 2 cut(s) 41, 230
AgsI TTSAA 7 cut(s) 17, 157, 416, 468, 613, 869, 1156
AjnI CCWGG 1 cut(s) 110
AluBI AGCT 4 cut(s) 402, 514, 643, 649
AluI AGCT 4 cut(s) 402, 514, 643, 649
Alw26I GTCTC 2 cut(s) 579, 1109
AlwNI CAGNNNCTG 1 cut(s) 277
Ama87I CYCGRG 1 cut(s) 930
AoxI GGCC 3 cut(s) 98, 260, 759
ApeKI GCWGC 2 cut(s) 740, 755
ApoI RAATTY 1 cut(s) 1174
ArsI GACNNNNNNTTYG 4 cut(s) 201, 233, 557, 589
AsiGI ACCGGT 2 cut(s) 41, 230
Asp700I GAANNNNTTC 1 cut(s) 1131
AspLEI GCGC 5 cut(s) 206, 331, 582, 938, 1022
AspS9I GGNCC 2 cut(s) 198, 233
AsuHPI GGTGA 4 cut(s) 346, 355, 580, 850
AvaI CYCGRG 1 cut(s) 930
AvaII GGWCC 2 cut(s) 198, 233
BanI GGYRCC 2 cut(s) 803, 935
BanII GRGCYC 1 cut(s) 1166
BbvI GCAGC 2 cut(s) 727, 767
BccI CCATC 3 cut(s) 132, 233, 910
BceAI ACGGC 1 cut(s) 791
BciT130I CCWGG 1 cut(s) 112
BcoDI GTCTC 2 cut(s) 579, 1109
BfaI CTAG 1 cut(s) 1001
BfmI CTRYAG 1 cut(s) 269
BfoI RGCGCY 2 cut(s) 207, 939
BfuAI ACCTGC 1 cut(s) 322
BisI GCNGC 8 cut(s) 7, 260, 729, 732, 741, 756, 759, 1102
BlpI GCTNAGC 1 cut(s) 515
BlsI GCNGC 8 cut(s) 8, 261, 730, 733, 742, 757, 760, 1103
Bme1390I CCNGG 1 cut(s) 112
Bme18I GGWCC 2 cut(s) 198, 233
BmeT110I CYCGRG 1 cut(s) 930
BmgT120I GGNCC 2 cut(s) 198, 233
BmiI GGNNCC 4 cut(s) 805, 928, 937, 1163
BmrFI CCNGG 1 cut(s) 112
BmrI ACTGGG 1 cut(s) 1160
BmsI GCATC 2 cut(s) 189, 399
BmuI ACTGGG 1 cut(s) 1160
BpmI CTGGAG 1 cut(s) 908
Bpu1102I GCTNAGC 1 cut(s) 515
BpuEI CTTGAG 1 cut(s) 344
BsaHI GRCGYC 2 cut(s) 108, 936
BsaJI CCNNGG 3 cut(s) 95, 288, 931
BsaWI WCCGGW 2 cut(s) 41, 230
Bsc4I CCNNNNNNNGG 3 cut(s) 32, 96, 195
Bse118I RCCGGY 3 cut(s) 41, 230, 826
Bse1I ACTGG 3 cut(s) 749, 854, 1166
Bse3DI GCAATG 2 cut(s) 430, 981
BseBI CCWGG 1 cut(s) 112
BseDI CCNNGG 3 cut(s) 95, 288, 931
BseGI GGATG 3 cut(s) 219, 772, 958
BseLI CCNNNNNNNGG 3 cut(s) 32, 96, 195
BseMI GCAATG 2 cut(s) 430, 981
BseMII CTCAG 2 cut(s) 208, 529
BseNI ACTGG 3 cut(s) 749, 854, 1166
BseRI GAGGAG 1 cut(s) 1174
BseXI GCAGC 2 cut(s) 727, 767
BshFI GGCC 3 cut(s) 100, 262, 761
BshNI GGYRCC 2 cut(s) 803, 935
BshTI ACCGGT 2 cut(s) 41, 230
BsiHKCI CYCGRG 1 cut(s) 930
BsiSI CCGG 5 cut(s) 42, 231, 786, 827, 924
BslI CCNNNNNNNGG 3 cut(s) 32, 96, 195
BsmAI GTCTC 2 cut(s) 579, 1109
BsmBI CGTCTC 1 cut(s) 1109
BsnI GGCC 3 cut(s) 100, 262, 761
BsoBI CYCGRG 1 cut(s) 930
Bsp1286I GDGCHC 1 cut(s) 1166
Bsp143I GATC 2 cut(s) 378, 616
Bsp1720I GCTNAGC 1 cut(s) 515
BspANI GGCC 3 cut(s) 100, 262, 761
BspCNI CTCAG 2 cut(s) 207, 528
BspLI GGNNCC 4 cut(s) 805, 928, 937, 1163
BspMI ACCTGC 1 cut(s) 322
BspT107I GGYRCC 2 cut(s) 803, 935
BsrBI CCGCTC 1 cut(s) 770
BsrDI GCAATG 2 cut(s) 430, 981
BsrFI RCCGGY 3 cut(s) 41, 230, 826
BsrI ACTGG 3 cut(s) 749, 854, 1166
BssAI RCCGGY 3 cut(s) 41, 230, 826
BssECI CCNNGG 3 cut(s) 95, 288, 931
BssMI GATC 2 cut(s) 378, 616
BssNI GRCGYC 2 cut(s) 108, 936
BssT1I CCWWGG 2 cut(s) 95, 288
Bst2UI CCWGG 1 cut(s) 112
Bst4CI ACNGT 2 cut(s) 227, 721
Bst6I CTCTTC 2 cut(s) 1077, 1151
BstACI GRCGYC 2 cut(s) 108, 936
BstAPI GCANNNNNTGC 1 cut(s) 560
BstC8I GCNNGC 3 cut(s) 404, 584, 651
BstDEI CTNAG 4 cut(s) 60, 194, 367, 515
BstF5I GGATG 3 cut(s) 219, 772, 958
BstH2I RGCGCY 2 cut(s) 207, 939
BstHHI GCGC 5 cut(s) 206, 331, 582, 938, 1022
BstKTI GATC 2 cut(s) 381, 619
BstMAI GTCTC 2 cut(s) 579, 1109
BstMBI GATC 2 cut(s) 378, 616
BstMWI GCNNNNNNNGC 6 cut(s) 259, 560, 737, 740, 767, 803
BstNI CCWGG 1 cut(s) 112
BstNSI RCATGY 1 cut(s) 601
BstSCI CCNGG 1 cut(s) 110
BstSFI CTRYAG 1 cut(s) 269
BstV1I GCAGC 2 cut(s) 727, 767
BsuRI GGCC 3 cut(s) 100, 262, 761
BtsCI GGATG 3 cut(s) 219, 772, 958
BtsI GCAGTG 1 cut(s) 1096
BtsIMutI CAGTG 3 cut(s) 847, 1096, 1173
BveI ACCTGC 1 cut(s) 322
Cac8I GCNNGC 3 cut(s) 404, 584, 651
CaiI CAGNNNCTG 1 cut(s) 277
CfoI GCGC 5 cut(s) 206, 331, 582, 938, 1022
Cfr10I RCCGGY 3 cut(s) 41, 230, 826
Cfr13I GGNCC 2 cut(s) 198, 233
CseI GACGC 2 cut(s) 116, 953
Csp6I GTAC 3 cut(s) 228, 388, 657
CspAI ACCGGT 2 cut(s) 41, 230
CviAII CATG 8 cut(s) 264, 306, 391, 598, 724, 777, 961, 968
CviQI GTAC 3 cut(s) 228, 388, 657
DdeI CTNAG 4 cut(s) 60, 194, 367, 515
DinI GGCGCC 1 cut(s) 937
DpnI GATC 2 cut(s) 380, 618
DpnII GATC 2 cut(s) 378, 616
DraI TTTAAA 2 cut(s) 124, 663
EaeI YGGCCR 1 cut(s) 260
Eam1104I CTCTTC 2 cut(s) 1077, 1151
EarI CTCTTC 2 cut(s) 1077, 1151
EciI GGCGGA 2 cut(s) 164, 735
Eco130I CCWWGG 2 cut(s) 95, 288
Eco24I GRGCYC 1 cut(s) 1166
Eco47I GGWCC 2 cut(s) 198, 233
Eco57I CTGAAG 1 cut(s) 665
Eco88I CYCGRG 1 cut(s) 930
EcoRI GAATTC 1 cut(s) 1174
EcoRII CCWGG 1 cut(s) 110
EcoT14I CCWWGG 2 cut(s) 95, 288
EcoT38I GRGCYC 1 cut(s) 1166
EgeI GGCGCC 1 cut(s) 937
EheI GGCGCC 1 cut(s) 937
ErhI CCWWGG 2 cut(s) 95, 288
Esp3I CGTCTC 1 cut(s) 1109
FaeI CATG 8 cut(s) 267, 309, 394, 601, 727, 780, 964, 971
FatI CATG 8 cut(s) 263, 305, 390, 597, 723, 776, 960, 967
Fnu4HI GCNGC 8 cut(s) 7, 260, 729, 732, 741, 756, 759, 1102
FokI GGATG 3 cut(s) 206, 759, 965
FriOI GRGCYC 1 cut(s) 1166
Fsp4HI GCNGC 8 cut(s) 7, 260, 729, 732, 741, 756, 759, 1102
FspBI CTAG 1 cut(s) 1001
GlaI GCGC 5 cut(s) 205, 330, 581, 937, 1021
GluI GCNGC 8 cut(s) 7, 260, 729, 732, 741, 756, 759, 1102
GsuI CTGGAG 1 cut(s) 908
HaeII RGCGCY 2 cut(s) 207, 939
HaeIII GGCC 3 cut(s) 100, 262, 761
HapII CCGG 5 cut(s) 42, 231, 786, 827, 924
HgaI GACGC 2 cut(s) 116, 953
HhaI GCGC 5 cut(s) 206, 331, 582, 938, 1022
Hin1I GRCGYC 2 cut(s) 108, 936
Hin1II CATG 8 cut(s) 267, 309, 394, 601, 727, 780, 964, 971
Hin6I GCGC 5 cut(s) 204, 329, 580, 936, 1020
HinP1I GCGC 5 cut(s) 204, 329, 580, 936, 1020
HindIII AAGCTT 1 cut(s) 647
HpaII CCGG 5 cut(s) 42, 231, 786, 827, 924
HphI GGTGA 4 cut(s) 346, 355, 580, 850
Hpy188I TCNGA 3 cut(s) 137, 279, 547
Hpy188III TCNNGA 2 cut(s) 236, 887
Hpy99I CGWCG 1 cut(s) 386
HpyAV CCTTC 5 cut(s) 109, 334, 343, 661, 970
HpyCH4III ACNGT 2 cut(s) 227, 721
HpyCH4V TGCA 8 cut(s) 175, 309, 423, 433, 563, 717, 755, 986
HpyF10VI GCNNNNNNNGC 6 cut(s) 259, 560, 737, 740, 767, 803
HpyF3I CTNAG 4 cut(s) 60, 194, 367, 515
Hsp92I GRCGYC 2 cut(s) 108, 936
Hsp92II CATG 8 cut(s) 267, 309, 394, 601, 727, 780, 964, 971
HspAI GCGC 5 cut(s) 204, 329, 580, 936, 1020
KasI GGCGCC 1 cut(s) 935
Kzo9I GATC 2 cut(s) 378, 616
LmnI GCTCC 4 cut(s) 49, 640, 748, 1161
Lsp1109I GCAGC 2 cut(s) 727, 767
LweI GCATC 2 cut(s) 189, 399
MaeI CTAG 1 cut(s) 1001
MaeIII GTNAC 1 cut(s) 904
MalI GATC 2 cut(s) 380, 618
MbiI CCGCTC 1 cut(s) 770
MboI GATC 2 cut(s) 378, 616
MboII GAAGA 4 cut(s) 358, 541, 1094, 1168
MfeI CAATTG 1 cut(s) 254
MhlI GDGCHC 1 cut(s) 1166
Mly113I GGCGCC 1 cut(s) 936
MlyI GAGTC 2 cut(s) 122, 530
MmeI TCCRAC 1 cut(s) 930
MnlI CCTC 6 cut(s) 26, 319, 832, 883, 926, 1152
MroXI GAANNNNTTC 1 cut(s) 1131
MslI CAYNNNNRTG 2 cut(s) 722, 900
MspA1I CMGCKG 1 cut(s) 758
MspI CCGG 5 cut(s) 42, 231, 786, 827, 924
MspR9I CCNGG 1 cut(s) 112
MunI CAATTG 1 cut(s) 254
MvaI CCWGG 1 cut(s) 112
MwoI GCNNNNNNNGC 6 cut(s) 259, 560, 737, 740, 767, 803
NarI GGCGCC 1 cut(s) 936
NdeII GATC 2 cut(s) 378, 616
NlaIII CATG 8 cut(s) 267, 309, 394, 601, 727, 780, 964, 971
NlaIV GGNNCC 4 cut(s) 805, 928, 937, 1163
NspI RCATGY 1 cut(s) 601
PaqCI CACCTGC 1 cut(s) 322
PdmI GAANNNNTTC 1 cut(s) 1131
PfeI GAWTC 8 cut(s) 64, 142, 274, 284, 361, 464, 865, 878
PinAI ACCGGT 2 cut(s) 41, 230
PkrI GCNGC 8 cut(s) 8, 261, 730, 733, 742, 757, 760, 1103
PleI GAGTC 2 cut(s) 122, 529
PluTI GGCGCC 1 cut(s) 939
PpsI GAGTC 2 cut(s) 122, 529
PsiI TTATAA 1 cut(s) 1040
Psp6I CCWGG 1 cut(s) 110
PspGI CCWGG 1 cut(s) 110
PspN4I GGNNCC 4 cut(s) 805, 928, 937, 1163
PspPI GGNCC 2 cut(s) 198, 233
PstNI CAGNNNCTG 1 cut(s) 277
RsaI GTAC 3 cut(s) 229, 389, 658
RsaNI GTAC 3 cut(s) 228, 388, 657
RseI CAYNNNNRTG 2 cut(s) 722, 900
SatI GCNGC 8 cut(s) 7, 260, 729, 732, 741, 756, 759, 1102
Sau3AI GATC 2 cut(s) 378, 616
Sau96I GGNCC 2 cut(s) 198, 233
SchI GAGTC 2 cut(s) 122, 530
ScrFI CCNGG 1 cut(s) 112
SduI GDGCHC 1 cut(s) 1166
SfaNI GCATC 2 cut(s) 189, 399
SfcI CTRYAG 1 cut(s) 269
SfoI GGCGCC 1 cut(s) 937
SinI GGWCC 2 cut(s) 198, 233
SmiMI CAYNNNNRTG 2 cut(s) 722, 900
SmlI CTYRAG 1 cut(s) 323
SmoI CTYRAG 1 cut(s) 323
SspDI GGCGCC 1 cut(s) 935
SspI AATATT 1 cut(s) 1036
SspMI CTAG 1 cut(s) 1001
StyD4I CCNGG 1 cut(s) 110
StyI CCWWGG 2 cut(s) 95, 288
TaaI ACNGT 2 cut(s) 227, 721
TaqI TCGA 6 cut(s) 183, 381, 462, 500, 506, 619
TatI WGTACW 1 cut(s) 387
TauI GCSGC 6 cut(s) 9, 262, 731, 734, 761, 1104
TfiI GAWTC 8 cut(s) 64, 142, 274, 284, 361, 464, 865, 878
TscAI CASTG 3 cut(s) 854, 1103, 1173
TseI GCWGC 2 cut(s) 740, 755
TspDTI ATGAA 5 cut(s) 353, 430, 441, 891, 1173
TspGWI ACGGA 3 cut(s) 296, 1133, 1154
TspRI CASTG 3 cut(s) 854, 1103, 1173
VpaK11BI GGWCC 2 cut(s) 198, 233
XapI RAATTY 1 cut(s) 1174
XceI RCATGY 1 cut(s) 601
XcmI CCANNNNNNNNNTGG 2 cut(s) 108, 946
XmnI GAANNNNTTC 1 cut(s) 1131
XspI CTAG 1 cut(s) 1001
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.