Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005297

Physical Location & Seq

Genomic Coordinates Forward (+)

11445490 .. 11450232

Gene Structure 4743 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G31880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGTTTTCTTGCATAGCTTGTACCAAAGCAGACGGAGGTGAAGAAGTCGAACATGGAGCGCGTGGAGGCACCACTCCCAATACTAAAGAAGCCGTCAAAAGCCTAACCATTCAGATTAAAGATATGGCTTTGAAATTCTCTGGTGCTTATAAACAATGCAAGCCATGCACTGGTTCCTCTAGTAGTCCCTTGAAGAAAGGACATAGATCATTTCCGGATTATGACAATGCCTCTGAAGGTGTTCCATACCCTTTCATGGGTGGAAGTGCTGGTTCAACTCCTGCTTGGGACTTCACAAACTCCTCTCATCATCCAGCTGGACGGTTAGAATCAAAGTTCACTTCAATATATGGAAATGATCGAGAATCTATCTCTGCACAGTCTTGTGATGTTGTACTGGATGATGATGGACCAAAAGAGTGGATGGCTCAAGTAGAACCTGGTGTTCATATCACATTTGCTTCTCTTCCCACTGGAGGAAATGATCTCAAACGGATCCGTTTCAGCCGAGAGATGTTTGATAAGTGGCAAGCTCAACGGTGGTGGGGTGAGAACTATGACAAGATCGTTGAGCTTTACAATGTACAGAGATTTAACCGCCAAGCTCTCCAAACGCCTGCAAGATCCGACGATCAGTCACAGAGAGATTCAACGTACTCAAAGATGGATTCAGCAAGAGAAAGCAAAGACTGGACTCCAAGACACAATTTCAGACCTCCAGGATCTGTCCCGCATCACTTTTATGGCGGCTCTAGCAACTATGGACCAGGAAGTTATCATGGAGGACCACCGATGGATGCAGCAAGAACCACAACTTCTTCCAGAGATGATCCACCTTCCATGAGCAATGCTAGTGAAATGCAAGCTGAGTGGATTGAAGAGGACGAGCCTGGTGTTTACATTACCATCAGACAATTATCAGATGGGACTAGAGAGCTACGTCGAGTCAGATTCAGCCGGGAACGGTTTGGGGAAGTGCATGCAAAGACATGGTGGGAGCAGAACAGAGAGAGAATACAAACACAGTACCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009735 GO:0009736 GO:0009737 GO:0009755 GO:0009791 GO:0009987 GO:0010033 GO:0016020 GO:0022622 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071368 GO:0071495 GO:0071944 GO:0090696 GO:0097305 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRX BRX_N

Protein Analysis

344

Amino Acids

38.76

Weight (kDa)

6.38

Isoelectric Point (pI)

50.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BRX_N	PF13713	24 - 56	3.2e-16	Transcription factor BRX N-terminal domain
BRX	PF08381	139 - 193	1.8e-25	Transcription factor regulating root and shoot growth via Pin3
BRX	PF08381	289 - 343	1.2e-26	Transcription factor regulating root and shoot growth via Pin3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005297)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31880 AT1G31880 AT2G21030 AT2G35600 AT2G35600 AT2G35600
fragaria_vesca	FvH4_5g23860 FvH4_5g23860 FvH4_5g23860 FvH4_5g23860 FvH4_5g23860
malus_domestica	MD06G1014400.v1.1
prunus_persica	Prupe.5G021900_v2.0.a1 Prupe.5G021900_v2.0.a1 Prupe.5G021900_v2.0.a1 Prupe.5G021900_v2.0.a1
pyrus_communis	pycom06g01150
rosa_chinensis	RchiOBHm_Chr7g0213251
rosa_laevigata	RLG00000002818
rosa_multiflora	Rmu_ssc0000084.1_g000024
rosa_roxburghii	Rroxscaffold_3G00246140
rosa_rugosa	Rorug07G0140700 Rorug07G0140700 Rorug07G0140800
rosa_samantha	Rh7AG272300 Rh7BG268000 Rh7CG291700 Rh7DG280200
rosa_wichuraiana	Rw7G023630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	150
AccB1I	GGYRCC	1 cut(s)	68
AccB7I	CCANNNNNTGG	1 cut(s)	170
AccII	CGCG	1 cut(s)	61
AccIII	TCCGGA	1 cut(s)	214
AciI	CCGC	3 cut(s)	598, 731, 747
AclWI	GGATC	5 cut(s)	490, 503, 618, 730, 824
AcsI	RAATTY	1 cut(s)	134
AcuI	CTGAAG	1 cut(s)	255
AfaI	GTAC	5 cut(s)	22, 396, 585, 656, 1028
AfiI	CCNNNNNNNGG	4 cut(s)	170, 256, 257, 476
AgsI	TTSAA	6 cut(s)	133, 193, 276, 345, 651, 878
AhdI	GACNNNNNGTC	1 cut(s)	634
AjnI	CCWGG	4 cut(s)	439, 718, 766, 889
AluBI	AGCT	7 cut(s)	17, 317, 533, 574, 605, 866, 937
AluI	AGCT	7 cut(s)	17, 317, 533, 574, 605, 866, 937
AlwI	GGATC	5 cut(s)	490, 503, 618, 730, 824
AlwNI	CAGNNNCTG	1 cut(s)	725
Aor13HI	TCCGGA	1 cut(s)	214
ApeKI	GCWGC	1 cut(s)	800
ApoI	RAATTY	1 cut(s)	134
Asp700I	GAANNNNTTC	1 cut(s)	240
AspLEI	GCGC	1 cut(s)	61
AspS9I	GGNCC	3 cut(s)	410, 764, 785
AsuC2I	CCSGG	1 cut(s)	959
AsuHPI	GGTGA	2 cut(s)	50, 560
AvaII	GGWCC	3 cut(s)	410, 764, 785
BamHI	GGATCC	1 cut(s)	495
BanI	GGYRCC	1 cut(s)	68
BbvI	GCAGC	1 cut(s)	812
BccI	CCATC	6 cut(s)	401, 418, 658, 787, 914, 917
BceAI	ACGGC	1 cut(s)	77
BciT130I	CCWGG	4 cut(s)	441, 720, 768, 891
BcnI	CCSGG	1 cut(s)	959
BfaI	CTAG	4 cut(s)	180, 753, 852, 930
BisI	GCNGC	2 cut(s)	748, 801
BlsI	GCNGC	2 cut(s)	749, 802
Bme1390I	CCNGG	5 cut(s)	441, 720, 768, 891, 959
Bme18I	GGWCC	3 cut(s)	410, 764, 785
BmeRI	GACNNNNNGTC	1 cut(s)	634
BmgT120I	GGNCC	3 cut(s)	410, 764, 785
BmiI	GGNNCC	3 cut(s)	70, 175, 497
BmrFI	CCNGG	5 cut(s)	441, 720, 768, 891, 959
BmsI	GCATC	2 cut(s)	742, 787
BpmI	CTGGAG	2 cut(s)	495, 702
BpuEI	CTTGAG	1 cut(s)	414
BpuMI	CCSGG	1 cut(s)	959
BsaWI	WCCGGW	1 cut(s)	214
Bsc4I	CCNNNNNNNGG	4 cut(s)	170, 256, 257, 476
Bse1I	ACTGG	4 cut(s)	175, 402, 478, 695
Bse3DI	GCAATG	1 cut(s)	853
BseAI	TCCGGA	1 cut(s)	214
BseBI	CCWGG	4 cut(s)	441, 720, 768, 891
BseGI	GGATG	4 cut(s)	310, 406, 429, 802
BseLI	CCNNNNNNNGG	4 cut(s)	170, 256, 257, 476
BseMI	GCAATG	1 cut(s)	853
BseMII	CTCAG	1 cut(s)	858
BseNI	ACTGG	4 cut(s)	175, 402, 478, 695
BseRI	GAGGAG	1 cut(s)	292
BseXI	GCAGC	1 cut(s)	812
BsgI	GTGCAG	1 cut(s)	360
Bsh1236I	CGCG	1 cut(s)	61
BshNI	GGYRCC	1 cut(s)	68
BsiSI	CCGG	2 cut(s)	215, 958
BslFI	GGGAC	4 cut(s)	171, 302, 713, 940
BslI	CCNNNNNNNGG	4 cut(s)	170, 256, 257, 476
BsmFI	GGGAC	4 cut(s)	171, 302, 713, 940
Bsp13I	TCCGGA	1 cut(s)	214
Bsp1407I	TGTACA	1 cut(s)	583
Bsp143I	GATC	9 cut(s)	206, 358, 484, 495, 564, 623, 631, 722, 829
BspACI	CCGC	3 cut(s)	598, 731, 747
BspCNI	CTCAG	1 cut(s)	859
BspEI	TCCGGA	1 cut(s)	214
BspFNI	CGCG	1 cut(s)	61
BspLI	GGNNCC	3 cut(s)	70, 175, 497
BspPI	GGATC	5 cut(s)	490, 503, 618, 730, 824
BspT107I	GGYRCC	1 cut(s)	68
BsrDI	GCAATG	1 cut(s)	853
BsrGI	TGTACA	1 cut(s)	583
BsrI	ACTGG	4 cut(s)	175, 402, 478, 695
BssMI	GATC	9 cut(s)	206, 358, 484, 495, 564, 623, 631, 722, 829
Bst2UI	CCWGG	4 cut(s)	441, 720, 768, 891
Bst4CI	ACNGT	5 cut(s)	324, 381, 540, 966, 1026
Bst6I	CTCTTC	2 cut(s)	471, 873
BstAPI	GCANNNNNTGC	1 cut(s)	165
BstAUI	TGTACA	1 cut(s)	583
BstC8I	GCNNGC	5 cut(s)	161, 531, 618, 864, 981
BstDEI	CTNAG	1 cut(s)	867
BstF5I	GGATG	4 cut(s)	310, 406, 429, 802
BstFNI	CGCG	1 cut(s)	61
BstHHI	GCGC	1 cut(s)	61
BstKTI	GATC	9 cut(s)	209, 361, 487, 498, 567, 626, 634, 725, 832
BstMBI	GATC	9 cut(s)	206, 358, 484, 495, 564, 623, 631, 722, 829
BstMWI	GCNNNNNNNGC	2 cut(s)	165, 753
BstNI	CCWGG	4 cut(s)	441, 720, 768, 891
BstNSI	RCATGY	1 cut(s)	983
BstSCI	CCNGG	5 cut(s)	439, 718, 766, 889, 957
BstUI	CGCG	1 cut(s)	61
BstV1I	GCAGC	1 cut(s)	812
BstX2I	RGATCY	3 cut(s)	495, 623, 722
BstXI	CCANNNNNNTGG	1 cut(s)	420
BstYI	RGATCY	3 cut(s)	495, 623, 722
BtsCI	GGATG	4 cut(s)	310, 406, 429, 802
BtsIMutI	CAGTG	2 cut(s)	168, 471
Cac8I	GCNNGC	5 cut(s)	161, 531, 618, 864, 981
CaiI	CAGNNNCTG	1 cut(s)	725
CfoI	GCGC	1 cut(s)	61
Cfr13I	GGNCC	3 cut(s)	410, 764, 785
CsiI	ACCWGGT	1 cut(s)	439
Csp6I	GTAC	5 cut(s)	21, 395, 584, 655, 1027
CspCI	CAANNNNNGTGG	4 cut(s)	524, 559, 851, 886
CviAII	CATG	7 cut(s)	53, 165, 256, 779, 841, 980, 990
CviQI	GTAC	5 cut(s)	21, 395, 584, 655, 1027
DdeI	CTNAG	1 cut(s)	867
DpnI	GATC	9 cut(s)	208, 360, 486, 497, 566, 625, 633, 724, 831
DpnII	GATC	9 cut(s)	206, 358, 484, 495, 564, 623, 631, 722, 829
DriI	GACNNNNNGTC	1 cut(s)	634
Eam1104I	CTCTTC	2 cut(s)	471, 873
Eam1105I	GACNNNNNGTC	1 cut(s)	634
EarI	CTCTTC	2 cut(s)	471, 873
Eco47I	GGWCC	3 cut(s)	410, 764, 785
Eco57I	CTGAAG	1 cut(s)	255
EcoRII	CCWGG	4 cut(s)	439, 718, 766, 889
FaeI	CATG	7 cut(s)	56, 168, 259, 782, 844, 983, 993
FaqI	GGGAC	4 cut(s)	171, 302, 713, 940
FatI	CATG	7 cut(s)	52, 164, 255, 778, 840, 979, 989
FauI	CCCGC	1 cut(s)	738
Fnu4HI	GCNGC	2 cut(s)	748, 801
FokI	GGATG	4 cut(s)	297, 413, 436, 809
Fsp4HI	GCNGC	2 cut(s)	748, 801
FspBI	CTAG	4 cut(s)	180, 753, 852, 930
GlaI	GCGC	1 cut(s)	60
GluI	GCNGC	2 cut(s)	748, 801
GsuI	CTGGAG	2 cut(s)	495, 702
HapII	CCGG	2 cut(s)	215, 958
HhaI	GCGC	1 cut(s)	61
Hin1II	CATG	7 cut(s)	56, 168, 259, 782, 844, 983, 993
Hin6I	GCGC	1 cut(s)	59
HinP1I	GCGC	1 cut(s)	59
HinfI	GANTC	7 cut(s)	329, 365, 647, 668, 694, 945, 951
HpaII	CCGG	2 cut(s)	215, 958
HphI	GGTGA	2 cut(s)	50, 560
Hpy166II	GTNNAC	2 cut(s)	339, 898
Hpy188I	TCNGA	7 cut(s)	114, 235, 628, 713, 911, 922, 950
Hpy188III	TCNNGA	3 cut(s)	215, 362, 822
Hpy8I	GTNNAC	2 cut(s)	339, 898
Hpy99I	CGWCG	2 cut(s)	632, 945
HpyAV	CCTTC	2 cut(s)	230, 846
HpyCH4III	ACNGT	5 cut(s)	324, 381, 540, 966, 1026
HpyCH4IV	ACGT	2 cut(s)	653, 940
HpyCH4V	TGCA	9 cut(s)	12, 159, 168, 377, 620, 800, 862, 979, 983
HpyF10VI	GCNNNNNNNGC	2 cut(s)	165, 753
HpyF3I	CTNAG	1 cut(s)	867
HpySE526I	ACGT	2 cut(s)	653, 940
Hsp92II	CATG	7 cut(s)	56, 168, 259, 782, 844, 983, 993
HspAI	GCGC	1 cut(s)	59
Kpn2I	TCCGGA	1 cut(s)	214
Kzo9I	GATC	9 cut(s)	206, 358, 484, 495, 564, 623, 631, 722, 829
LmnI	GCTCC	2 cut(s)	56, 997
Lsp1109I	GCAGC	1 cut(s)	812
LweI	GCATC	2 cut(s)	742, 787
MabI	ACCWGGT	1 cut(s)	439
MaeI	CTAG	4 cut(s)	180, 753, 852, 930
MaeII	ACGT	2 cut(s)	653, 940
MaeIII	GTNAC	1 cut(s)	636
MalI	GATC	9 cut(s)	208, 360, 486, 497, 566, 625, 633, 724, 831
MboI	GATC	9 cut(s)	206, 358, 484, 495, 564, 623, 631, 722, 829
MboII	GAAGA	5 cut(s)	53, 205, 458, 810, 890
MflI	RGATCY	3 cut(s)	495, 623, 722
MluCI	AATT	3 cut(s)	134, 706, 914
MlyI	GAGTC	2 cut(s)	688, 954
MmeI	TCCRAC	1 cut(s)	651
MnlI	CCTC	9 cut(s)	29, 59, 187, 241, 313, 470, 726, 776, 874
MroI	TCCGGA	1 cut(s)	214
MroXI	GAANNNNTTC	1 cut(s)	240
MseI	TTAA	2 cut(s)	117, 594
MslI	CAYNNNNRTG	1 cut(s)	741
MspA1I	CMGCKG	1 cut(s)	317
MspI	CCGG	2 cut(s)	215, 958
MspR9I	CCNGG	5 cut(s)	441, 720, 768, 891, 959
MvaI	CCWGG	4 cut(s)	441, 720, 768, 891
MvnI	CGCG	1 cut(s)	61
MwoI	GCNNNNNNNGC	2 cut(s)	165, 753
NciI	CCSGG	1 cut(s)	959
NdeII	GATC	9 cut(s)	206, 358, 484, 495, 564, 623, 631, 722, 829
NlaIII	CATG	7 cut(s)	56, 168, 259, 782, 844, 983, 993
NlaIV	GGNNCC	3 cut(s)	70, 175, 497
NmeAIII	GCCGAG	1 cut(s)	533
NmuCI	GTSAC	1 cut(s)	636
NspI	RCATGY	1 cut(s)	983
PaeI	GCATGC	1 cut(s)	983
PdmI	GAANNNNTTC	1 cut(s)	240
PfeI	GAWTC	5 cut(s)	329, 365, 647, 668, 951
PflMI	CCANNNNNTGG	1 cut(s)	170
PfoI	TCCNGGA	1 cut(s)	718
PkrI	GCNGC	2 cut(s)	749, 802
PleI	GAGTC	2 cut(s)	688, 953
PpsI	GAGTC	2 cut(s)	688, 953
PsiI	TTATAA	1 cut(s)	150
Psp6I	CCWGG	4 cut(s)	439, 718, 766, 889
PspGI	CCWGG	4 cut(s)	439, 718, 766, 889
PspN4I	GGNNCC	3 cut(s)	70, 175, 497
PspPI	GGNCC	3 cut(s)	410, 764, 785
PstNI	CAGNNNCTG	1 cut(s)	725
PsuI	RGATCY	3 cut(s)	495, 623, 722
PvuII	CAGCTG	1 cut(s)	317
RsaI	GTAC	5 cut(s)	22, 396, 585, 656, 1028
RsaNI	GTAC	5 cut(s)	21, 395, 584, 655, 1027
RseI	CAYNNNNRTG	1 cut(s)	741
SaqAI	TTAA	2 cut(s)	117, 594
SatI	GCNGC	2 cut(s)	748, 801
Sau3AI	GATC	9 cut(s)	206, 358, 484, 495, 564, 623, 631, 722, 829
Sau96I	GGNCC	3 cut(s)	410, 764, 785
SchI	GAGTC	2 cut(s)	688, 954
ScrFI	CCNGG	5 cut(s)	441, 720, 768, 891, 959
SexAI	ACCWGGT	1 cut(s)	439
SfaNI	GCATC	2 cut(s)	742, 787
SinI	GGWCC	3 cut(s)	410, 764, 785
SmiMI	CAYNNNNRTG	1 cut(s)	741
SmlI	CTYRAG	1 cut(s)	429
SmoI	CTYRAG	1 cut(s)	429
SphI	GCATGC	1 cut(s)	983
Sse9I	AATT	3 cut(s)	134, 706, 914
SsiI	CCGC	3 cut(s)	598, 731, 747
SspMI	CTAG	4 cut(s)	180, 753, 852, 930
StyD4I	CCNGG	5 cut(s)	439, 718, 766, 889, 957
TaaI	ACNGT	5 cut(s)	324, 381, 540, 966, 1026
TaiI	ACGT	2 cut(s)	656, 943
TaqI	TCGA	3 cut(s)	48, 361, 943
TasI	AATT	3 cut(s)	134, 706, 914
TatI	WGTACW	2 cut(s)	394, 583
TauI	GCSGC	1 cut(s)	750
TfiI	GAWTC	5 cut(s)	329, 365, 647, 668, 951
Tru1I	TTAA	2 cut(s)	117, 594
Tru9I	TTAA	2 cut(s)	117, 594
TscAI	CASTG	2 cut(s)	175, 478
TseFI	GTSAC	1 cut(s)	636
TseI	GCWGC	1 cut(s)	800
Tsp45I	GTSAC	1 cut(s)	636
TspDTI	ATGAA	2 cut(s)	244, 437
TspGWI	ACGGA	3 cut(s)	48, 488, 508
TspRI	CASTG	2 cut(s)	175, 478
Van91I	CCANNNNNTGG	1 cut(s)	170
VpaK11BI	GGWCC	3 cut(s)	410, 764, 785
XapI	RAATTY	1 cut(s)	134
XceI	RCATGY	1 cut(s)	983
XmnI	GAANNNNTTC	1 cut(s)	240
XspI	CTAG	4 cut(s)	180, 753, 852, 930

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.