RLG00000002818

Protein Brevis radix-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0005297
Physical Location & Seq
Forward (+)
40317321 .. 40321460
4140 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002818

Sequence Viewer

Length: 1032 bp
ATGTTTACATGCATAGCATGTACGAAGCAACCGGAAGACGACGGAGGAGAGCGTGGGAGTGGCACCCCAAGTACAAAAGAAGCCGTCAAAAGCCTGACCACGCAGATCAAGGATATGGCATTGAAATTCTCCGGAGCGTACAAGCAATGCAAACCATGCACAGGATCAAGCAGTAGCTTCAAGAAAGGGCAAAGGAGACCTTACCCTGATTTTGATACTGCTTCTGAAGGGGTTCCATACCCTTATATGGGAGCTGCAAGCTCAAGTTCTACACCTGCTTGGGACTTCACCTCTAATCATCAACTTGGTGCAAGATCAGACTCGAGATTCACTCGACCATATGGCGGTGGTGGTGATCCGACTCGAGATTCAACGTGTGAGGTTGTGTTAGAGGATGAGGATGAGCCCAAGGAGTGGATGGCACAGGTTGAACCAGGAGTGCACATCACTTTTGTGTCACTTCCTAATGGGGGAAATGATCTTAAACGAATTCGCTTCAGCCGAGAGATGTTTAACAAATGGCAAGCTCAGCGATGGTGGGGTGAGAATTATGACCGCATAATGGAGCTCTACAATGTCCAGAGATTCAACCGGCAAGCTCTTCACACTCCACCAAGGTCTGAAGATGAGCCACCAAGAGAATCCTTTTACTCGAGGATGGACTCTGCTAGAGAAAGCCCTATGGTTCCAACAAACTGGACACCACGGCACCACTACAAACCATCTGGAGCTGGAAGTGGAGGATACTTCCCATCTGATGGTCATCATTATAATGCAGGTGGATCTATTGATGCATCGCGAACGACAACCTCATCTAGAGATGAAGCTTCCGTCTCTATTAGCAATGCTAGTGAGGTGGAGTCCGAATGGGTTGAACAAGATGAGCCTGGGGTCTATATAACCATTCGACAGCTAGCCGATGGCACTAGGGAGCTCCGGCGTGTTAGGTTCAGTCGCGAAAGGTTTGGGGAGAGGAATGCGAAGACATGGTGGGAAGAAAACCGAGAGAGAATACAAGCTCAATATCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BRX BRX_N

Protein Analysis

344

Amino Acids

38.88

Weight (kDa)

6.05

Isoelectric Point (pI)

54.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BRX_N PF13713 18 - 53 3.5e-17 Transcription factor BRX N-terminal domain
BRX PF08381 137 - 191 3e-26 Transcription factor regulating root and shoot growth via Pin3
BRX PF08381 287 - 342 2e-27 Transcription factor regulating root and shoot growth via Pin3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 771
AarI CACCTGC 2 cut(s) 283, 767
Acc36I ACCTGC 2 cut(s) 283, 767
AccB1I GGYRCC 2 cut(s) 62, 708
AccB7I CCANNNNNTGG 2 cut(s) 414, 758
AccII CGCG 2 cut(s) 799, 957
AccIII TCCGGA 1 cut(s) 131
AciI CCGC 2 cut(s) 345, 556
AclWI GGATC 3 cut(s) 172, 350, 790
AcsI RAATTY 2 cut(s) 125, 489
AcuI CTGAAG 3 cut(s) 246, 481, 642
AfaI GTAC 3 cut(s) 22, 73, 140
AfiI CCNNNNNNNGG 8 cut(s) 161, 247, 248, 344, 414, 470, 562, 758
AflIII ACRYGT 1 cut(s) 374
AgsI TTSAA 6 cut(s) 124, 181, 372, 431, 589, 875
AjnI CCWGG 2 cut(s) 433, 886
AleI CACNNNNGTG 1 cut(s) 452
Alw21I GWGCWC 3 cut(s) 444, 570, 936
Alw26I GTCTC 2 cut(s) 190, 838
Alw44I GTGCAC 1 cut(s) 440
AlwI GGATC 3 cut(s) 172, 350, 790
Ama87I CYCGRG 3 cut(s) 322, 363, 652
Aor13HI TCCGGA 1 cut(s) 131
ApaLI GTGCAC 1 cut(s) 440
ApeKI GCWGC 1 cut(s) 254
ApoI RAATTY 2 cut(s) 125, 489
Asp700I GAANNNNTTC 1 cut(s) 231
AsuHPI GGTGA 3 cut(s) 280, 365, 554
AsuNHI GCTAGC 1 cut(s) 913
AvaI CYCGRG 3 cut(s) 322, 363, 652
BaeGI GKGCMC 1 cut(s) 444
BanI GGYRCC 2 cut(s) 62, 708
BanII GRGCYC 3 cut(s) 408, 570, 936
BbsI GAAGAC 2 cut(s) 42, 989
Bbv12I GWGCWC 3 cut(s) 444, 570, 936
BbvI GCAGC 1 cut(s) 241
BccI CCATC 7 cut(s) 412, 528, 652, 730, 752, 760, 914
BceAI ACGGC 2 cut(s) 68, 722
BciT130I CCWGG 2 cut(s) 435, 888
BciVI GTATCC 1 cut(s) 737
BcoDI GTCTC 2 cut(s) 190, 838
BfaI CTAG 5 cut(s) 669, 816, 849, 914, 927
BfuAI ACCTGC 2 cut(s) 283, 767
BfuI GTATCC 1 cut(s) 737
BisI GCNGC 1 cut(s) 255
BlpI GCTNAGC 1 cut(s) 528
BlsI GCNGC 1 cut(s) 256
Bme1390I CCNGG 2 cut(s) 435, 888
BmeT110I CYCGRG 3 cut(s) 322, 363, 652
BmiI GGNNCC 4 cut(s) 64, 234, 687, 710
BmrFI CCNGG 2 cut(s) 435, 888
BmsI GCATC 2 cut(s) 781, 803
BmtI GCTAGC 1 cut(s) 917
BpiI GAAGAC 2 cut(s) 42, 989
BplI GAGNNNNNCTC 2 cut(s) 316, 348
BpmI CTGGAG 1 cut(s) 747
Bpu1102I GCTNAGC 1 cut(s) 528
BpuEI CTTGAG 1 cut(s) 247
BsaBI GATNNNNATC 1 cut(s) 762
BsaI GGTCTC 1 cut(s) 190
BsaJI CCNNGG 4 cut(s) 408, 614, 704, 887
BsaWI WCCGGW 2 cut(s) 31, 131
Bsc4I CCNNNNNNNGG 8 cut(s) 161, 247, 248, 344, 414, 470, 562, 758
Bse118I RCCGGY 1 cut(s) 591
Bse1I ACTGG 1 cut(s) 701
Bse3DI GCAATG 2 cut(s) 152, 850
Bse8I GATNNNNATC 1 cut(s) 762
BseAI TCCGGA 1 cut(s) 131
BseBI CCWGG 2 cut(s) 435, 888
BseDI CCNNGG 4 cut(s) 408, 614, 704, 887
BseGI GGATG 4 cut(s) 400, 406, 423, 663
BseJI GATNNNNATC 1 cut(s) 762
BseLI CCNNNNNNNGG 8 cut(s) 161, 247, 248, 344, 414, 470, 562, 758
BseMI GCAATG 2 cut(s) 152, 850
BseMII CTCAG 1 cut(s) 542
BseNI ACTGG 1 cut(s) 701
BseRI GAGGAG 1 cut(s) 60
BseSI GKGCMC 1 cut(s) 444
BseXI GCAGC 1 cut(s) 241
Bsh1236I CGCG 2 cut(s) 799, 957
BshNI GGYRCC 2 cut(s) 62, 708
BsiHKAI GWGCWC 3 cut(s) 444, 570, 936
BsiHKCI CYCGRG 3 cut(s) 322, 363, 652
BsiSI CCGG 4 cut(s) 32, 132, 592, 937
BslFI GGGAC 1 cut(s) 296
BslI CCNNNNNNNGG 8 cut(s) 161, 247, 248, 344, 414, 470, 562, 758
BsmAI GTCTC 2 cut(s) 190, 838
BsmBI CGTCTC 1 cut(s) 838
BsmFI GGGAC 1 cut(s) 296
BsmI GAATGC 1 cut(s) 982
Bso31I GGTCTC 1 cut(s) 190
BsoBI CYCGRG 3 cut(s) 322, 363, 652
Bsp1286I GDGCHC 4 cut(s) 408, 444, 570, 936
Bsp13I TCCGGA 1 cut(s) 131
Bsp143I GATC 6 cut(s) 105, 164, 314, 355, 478, 782
Bsp1720I GCTNAGC 1 cut(s) 528
Bsp68I TCGCGA 2 cut(s) 799, 957
BspACI CCGC 2 cut(s) 345, 556
BspCNI CTCAG 1 cut(s) 541
BspEI TCCGGA 1 cut(s) 131
BspFNI CGCG 2 cut(s) 799, 957
BspLI GGNNCC 4 cut(s) 64, 234, 687, 710
BspMI ACCTGC 2 cut(s) 283, 767
BspOI GCTAGC 1 cut(s) 917
BspPI GGATC 3 cut(s) 172, 350, 790
BspQI GCTCTTC 1 cut(s) 606
BspT107I GGYRCC 2 cut(s) 62, 708
BspTNI GGTCTC 1 cut(s) 190
BsrDI GCAATG 2 cut(s) 152, 850
BsrFI RCCGGY 1 cut(s) 591
BsrI ACTGG 1 cut(s) 701
BssAI RCCGGY 1 cut(s) 591
BssECI CCNNGG 4 cut(s) 408, 614, 704, 887
BssMI GATC 6 cut(s) 105, 164, 314, 355, 478, 782
BssT1I CCWWGG 2 cut(s) 408, 614
Bst2UI CCWGG 2 cut(s) 435, 888
Bst6I CTCTTC 1 cut(s) 606
BstAPI GCANNNNNTGC 1 cut(s) 156
BstC8I GCNNGC 4 cut(s) 259, 525, 597, 915
BstDEI CTNAG 1 cut(s) 528
BstDSI CCRYGG 1 cut(s) 704
BstF5I GGATG 4 cut(s) 400, 406, 423, 663
BstFNI CGCG 2 cut(s) 799, 957
BstKTI GATC 6 cut(s) 108, 167, 317, 358, 481, 785
BstMAI GTCTC 2 cut(s) 190, 838
BstMBI GATC 6 cut(s) 105, 164, 314, 355, 478, 782
BstMWI GCNNNNNNNGC 2 cut(s) 156, 529
BstNI CCWGG 2 cut(s) 435, 888
BstNSI RCATGY 2 cut(s) 12, 21
BstSCI CCNGG 2 cut(s) 433, 886
BstSLI GKGCMC 1 cut(s) 444
BstUI CGCG 2 cut(s) 799, 957
BstV1I GCAGC 1 cut(s) 241
BstV2I GAAGAC 2 cut(s) 42, 989
BstX2I RGATCY 1 cut(s) 782
BstXI CCANNNNNNTGG 1 cut(s) 696
BstYI RGATCY 1 cut(s) 782
BsuI GTATCC 1 cut(s) 737
BtgI CCRYGG 1 cut(s) 704
BtgZI GCGATG 2 cut(s) 547, 780
BtsCI GGATG 4 cut(s) 400, 406, 423, 663
BtuMI TCGCGA 2 cut(s) 799, 957
BveI ACCTGC 2 cut(s) 283, 767
Cac8I GCNNGC 4 cut(s) 259, 525, 597, 915
Cfr10I RCCGGY 1 cut(s) 591
Csp6I GTAC 3 cut(s) 21, 72, 139
CviAII CATG 4 cut(s) 9, 18, 156, 987
CviQI GTAC 3 cut(s) 21, 72, 139
DdeI CTNAG 1 cut(s) 528
DpnI GATC 6 cut(s) 107, 166, 316, 357, 480, 784
DpnII GATC 6 cut(s) 105, 164, 314, 355, 478, 782
Eam1104I CTCTTC 1 cut(s) 606
EarI CTCTTC 1 cut(s) 606
Ecl136II GAGCTC 2 cut(s) 568, 934
Eco130I CCWWGG 2 cut(s) 408, 614
Eco24I GRGCYC 3 cut(s) 408, 570, 936
Eco31I GGTCTC 1 cut(s) 190
Eco53kI GAGCTC 2 cut(s) 568, 934
Eco57I CTGAAG 3 cut(s) 246, 481, 642
Eco88I CYCGRG 3 cut(s) 322, 363, 652
EcoICRI GAGCTC 2 cut(s) 568, 934
EcoRI GAATTC 1 cut(s) 489
EcoRII CCWGG 2 cut(s) 433, 886
EcoT14I CCWWGG 2 cut(s) 408, 614
EcoT22I ATGCAT 2 cut(s) 14, 796
EcoT38I GRGCYC 3 cut(s) 408, 570, 936
ErhI CCWWGG 2 cut(s) 408, 614
Esp3I CGTCTC 1 cut(s) 838
FaeI CATG 4 cut(s) 12, 21, 159, 990
FalI AAGNNNNNCTT 2 cut(s) 184, 216
FaqI GGGAC 1 cut(s) 296
FatI CATG 4 cut(s) 8, 17, 155, 986
FauNDI CATATG 1 cut(s) 340
Fnu4HI GCNGC 1 cut(s) 255
FokI GGATG 4 cut(s) 407, 413, 430, 670
FriOI GRGCYC 3 cut(s) 408, 570, 936
Fsp4HI GCNGC 1 cut(s) 255
FspBI CTAG 5 cut(s) 669, 816, 849, 914, 927
GluI GCNGC 1 cut(s) 255
GsuI CTGGAG 1 cut(s) 747
HapII CCGG 4 cut(s) 32, 132, 592, 937
Hin1II CATG 4 cut(s) 12, 21, 159, 990
HindIII AAGCTT 1 cut(s) 825
HinfI GANTC 8 cut(s) 320, 327, 361, 368, 585, 641, 662, 860
HpaII CCGG 4 cut(s) 32, 132, 592, 937
HphI GGTGA 3 cut(s) 280, 365, 554
Hpy166II GTNNAC 2 cut(s) 6, 442
Hpy188I TCNGA 6 cut(s) 226, 319, 360, 622, 757, 865
Hpy188III TCNNGA 9 cut(s) 132, 181, 324, 365, 580, 726, 798, 816, 956
Hpy8I GTNNAC 2 cut(s) 6, 442
Hpy99I CGWCG 1 cut(s) 44
HpyAV CCTTC 1 cut(s) 221
HpyCH4IV ACGT 1 cut(s) 374
HpyCH4V TGCA 8 cut(s) 12, 150, 159, 257, 311, 442, 776, 794
HpyF10VI GCNNNNNNNGC 2 cut(s) 156, 529
HpyF3I CTNAG 1 cut(s) 528
HpySE526I ACGT 1 cut(s) 374
Hsp92II CATG 4 cut(s) 12, 21, 159, 990
Kpn2I TCCGGA 1 cut(s) 131
Kzo9I GATC 6 cut(s) 105, 164, 314, 355, 478, 782
LguI GCTCTTC 1 cut(s) 606
LmnI GCTCC 6 cut(s) 134, 251, 565, 728, 931, 939
Lsp1109I GCAGC 1 cut(s) 241
LweI GCATC 2 cut(s) 781, 803
MaeI CTAG 5 cut(s) 669, 816, 849, 914, 927
MaeII ACGT 1 cut(s) 374
MaeIII GTNAC 1 cut(s) 456
MalI GATC 6 cut(s) 107, 166, 316, 357, 480, 784
MboI GATC 6 cut(s) 105, 164, 314, 355, 478, 782
MboII GAAGA 5 cut(s) 47, 593, 635, 994, 1007
MflI RGATCY 1 cut(s) 782
MhlI GDGCHC 4 cut(s) 408, 444, 570, 936
MluCI AATT 3 cut(s) 125, 489, 547
MlyI GAGTC 4 cut(s) 314, 355, 656, 869
MmeI TCCRAC 2 cut(s) 383, 713
Mph1103I ATGCAT 2 cut(s) 14, 796
MroI TCCGGA 1 cut(s) 131
MroXI GAANNNNTTC 1 cut(s) 231
MseI TTAA 3 cut(s) 483, 513, 1030
MslI CAYNNNNRTG 2 cut(s) 452, 771
MspI CCGG 4 cut(s) 32, 132, 592, 937
MspR9I CCNGG 2 cut(s) 435, 888
Mva1269I GAATGC 1 cut(s) 982
MvaI CCWGG 2 cut(s) 435, 888
MvnI CGCG 2 cut(s) 799, 957
MwoI GCNNNNNNNGC 2 cut(s) 156, 529
NdeI CATATG 1 cut(s) 340
NdeII GATC 6 cut(s) 105, 164, 314, 355, 478, 782
NheI GCTAGC 1 cut(s) 913
NlaIII CATG 4 cut(s) 12, 21, 159, 990
NlaIV GGNNCC 4 cut(s) 64, 234, 687, 710
NmeAIII GCCGAG 1 cut(s) 527
NmuCI GTSAC 1 cut(s) 456
NruI TCGCGA 2 cut(s) 799, 957
NsiI ATGCAT 2 cut(s) 14, 796
NspI RCATGY 2 cut(s) 12, 21
OliI CACNNNNGTG 1 cut(s) 452
PaeR7I CTCGAG 3 cut(s) 322, 363, 652
PaqCI CACCTGC 2 cut(s) 283, 767
PciSI GCTCTTC 1 cut(s) 606
PcsI WCGNNNNNNNCGW 1 cut(s) 499
PctI GAATGC 1 cut(s) 982
PdmI GAANNNNTTC 1 cut(s) 231
PfeI GAWTC 4 cut(s) 327, 368, 585, 641
PflMI CCANNNNNTGG 2 cut(s) 414, 758
PkrI GCNGC 1 cut(s) 256
PleI GAGTC 4 cut(s) 314, 355, 656, 868
PpsI GAGTC 4 cut(s) 314, 355, 656, 868
PsiI TTATAA 1 cut(s) 771
Psp124BI GAGCTC 2 cut(s) 570, 936
Psp6I CCWGG 2 cut(s) 433, 886
PspGI CCWGG 2 cut(s) 433, 886
PspN4I GGNNCC 4 cut(s) 64, 234, 687, 710
PspXI VCTCGAGB 1 cut(s) 652
PsuI RGATCY 1 cut(s) 782
RruI TCGCGA 2 cut(s) 799, 957
RsaI GTAC 3 cut(s) 22, 73, 140
RsaNI GTAC 3 cut(s) 21, 72, 139
RseI CAYNNNNRTG 2 cut(s) 452, 771
SacI GAGCTC 2 cut(s) 570, 936
SapI GCTCTTC 1 cut(s) 606
SaqAI TTAA 3 cut(s) 483, 513, 1030
SatI GCNGC 1 cut(s) 255
Sau3AI GATC 6 cut(s) 105, 164, 314, 355, 478, 782
SchI GAGTC 4 cut(s) 314, 355, 656, 869
ScrFI CCNGG 2 cut(s) 435, 888
SduI GDGCHC 4 cut(s) 408, 444, 570, 936
SfaNI GCATC 2 cut(s) 781, 803
Sfr274I CTCGAG 3 cut(s) 322, 363, 652
SlaI CTCGAG 3 cut(s) 322, 363, 652
SmiMI CAYNNNNRTG 2 cut(s) 452, 771
SmlI CTYRAG 4 cut(s) 262, 322, 363, 652
SmoI CTYRAG 4 cut(s) 262, 322, 363, 652
Sse9I AATT 3 cut(s) 125, 489, 547
SsiI CCGC 2 cut(s) 345, 556
SspMI CTAG 5 cut(s) 669, 816, 849, 914, 927
SstI GAGCTC 2 cut(s) 570, 936
StyD4I CCNGG 2 cut(s) 433, 886
StyI CCWWGG 2 cut(s) 408, 614
TaiI ACGT 1 cut(s) 377
TaqI TCGA 5 cut(s) 323, 334, 364, 653, 907
TasI AATT 3 cut(s) 125, 489, 547
TatI WGTACW 1 cut(s) 71
TfiI GAWTC 4 cut(s) 327, 368, 585, 641
Tru1I TTAA 3 cut(s) 483, 513, 1030
Tru9I TTAA 3 cut(s) 483, 513, 1030
TseFI GTSAC 1 cut(s) 456
TseI GCWGC 1 cut(s) 254
Tsp45I GTSAC 1 cut(s) 456
TspDTI ATGAA 1 cut(s) 837
TspGWI ACGGA 2 cut(s) 57, 820
Van91I CCANNNNNTGG 2 cut(s) 414, 758
VneI GTGCAC 1 cut(s) 440
XapI RAATTY 2 cut(s) 125, 489
XbaI TCTAGA 1 cut(s) 815
XceI RCATGY 2 cut(s) 12, 21
XcmI CCANNNNNNNNNTGG 1 cut(s) 415
XhoI CTCGAG 3 cut(s) 322, 363, 652
XmnI GAANNNNTTC 1 cut(s) 231
XspI CTAG 5 cut(s) 669, 816, 849, 914, 927
Zsp2I ATGCAT 2 cut(s) 14, 796
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.