Rh7DG280200

Protein Brevis radix-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0005297
Physical Location & Seq
Reverse (-)
30258244 .. 30260798
2555 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG280200.1

Sequence Viewer

Length: 987 bp
ATGAGTACTCCATGGAATACCTTTCTGTGCTTTTGGCTGACGTTGTTTTTTTTTAACATTGTGCAGATCAAGGATATGGCATTGAAATTCTCCGGTGCGTACAAGCAATGCAAACCATGCACAGGATCAAGCAGTAGCTTCAAGAAAGGGCAAAGGAGACCTTACCCTGATTTTGATACTGCTTCTGAAGGGGTTCCATACCCTTATGCTGCAAGCTCAAGTTCTACACCTGCTTGGGACTTCACCTCTAATCATCAACTTGGTGCAAGATCAGACTCGAGATTCACTCGACCATATGGCGGCGGTGGTGATCCAACTCGAGATTCAACGTGTGAGGTTGTGTTAGAGGATGAGGATGAGCCCAAGGAGTGGATGGCACAGGTTGAACCAGGAGTGCACATCACTTTTGTGTCGCTTCCTAATGGGGGAAATGATCTTAAACGAATTCGCTTCAGCCGAGAGATGTTTAACAAATGGCAAGCTCAGCGATGGTGGGGTGAGAATTATGACCGCATAATGGAGCTCTACAATGTCCAGAGATTCAACCGGCAAGCTCTTCACACTCCACCAAGGTCTGAAGATGAGCCACCAAGAGAATCCTTTTACTCGAGGATGGACTCTGCTAGAGAAAGCCCTATGGTTCCAACAAACTGGACACCACGGCACCACTACAAACCCTCTGGAGCTGGAAGCGGAGGATACTTCCCATCTGATGGTCATCAGTATAATGCAGGTGGATCTATTGATGCATCACGAACGACAACCTCATCTAGAGACGAAGCTTCCGTCTCTATTAGCAATGCTAGTGAGGTGGAGTCCGAATGGGTTGAACAAGATGAGCCTGGGGTCTATATAACCATTCGACAGCTAGCCGATGGCACTAGGGAGCTCCGGCGTGTTAGGTTCAGTCGCGAAAGGTTTGGGGAGAGGAATGCGAAGACATGGTGGGAAGAAAACCGAGAGAGAATACAAGCTCAATACCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BRX BRX_N

Protein Analysis

328

Amino Acids

37.77

Weight (kDa)

6.14

Isoelectric Point (pI)

52.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BRX_N PF13713 22 - 40 2.8e-07 Transcription factor BRX N-terminal domain
BRX PF08381 122 - 176 2.8e-26 Transcription factor regulating root and shoot growth via Pin3
BRX PF08381 272 - 327 1.8e-27 Transcription factor regulating root and shoot growth via Pin3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 238, 722
Acc36I ACCTGC 2 cut(s) 238, 722
AccB1I GGYRCC 1 cut(s) 663
AccB7I CCANNNNNTGG 2 cut(s) 369, 713
AccII CGCG 1 cut(s) 912
AciI CCGC 4 cut(s) 300, 303, 511, 693
AclWI GGATC 3 cut(s) 133, 305, 745
AcsI RAATTY 2 cut(s) 86, 444
AcuI CTGAAG 3 cut(s) 207, 436, 597
AfaI GTAC 2 cut(s) 7, 101
AfiI CCNNNNNNNGG 6 cut(s) 122, 299, 369, 425, 517, 713
AflIII ACRYGT 1 cut(s) 329
AgsI TTSAA 6 cut(s) 85, 142, 327, 386, 544, 830
AjnI CCWGG 2 cut(s) 388, 841
AjuI GAANNNNNNNTTGG 2 cut(s) 307, 339
AleI CACNNNNGTG 1 cut(s) 407
Alw21I GWGCWC 3 cut(s) 399, 525, 891
Alw26I GTCTC 3 cut(s) 151, 768, 793
Alw44I GTGCAC 1 cut(s) 395
AlwI GGATC 3 cut(s) 133, 305, 745
Ama87I CYCGRG 3 cut(s) 277, 318, 607
ApaLI GTGCAC 1 cut(s) 395
ApeKI GCWGC 1 cut(s) 209
ApoI RAATTY 2 cut(s) 86, 444
ArsI GACNNNNNNTTYG 2 cut(s) 771, 803
Asp700I GAANNNNTTC 1 cut(s) 192
AsuHPI GGTGA 3 cut(s) 235, 320, 509
AsuNHI GCTAGC 1 cut(s) 868
AvaI CYCGRG 3 cut(s) 277, 318, 607
BaeGI GKGCMC 1 cut(s) 399
BanI GGYRCC 1 cut(s) 663
BanII GRGCYC 3 cut(s) 363, 525, 891
BbsI GAAGAC 1 cut(s) 944
Bbv12I GWGCWC 3 cut(s) 399, 525, 891
BbvI GCAGC 1 cut(s) 196
BccI CCATC 6 cut(s) 367, 483, 607, 707, 715, 869
BceAI ACGGC 1 cut(s) 677
BciT130I CCWGG 2 cut(s) 390, 843
BciVI GTATCC 1 cut(s) 692
BcoDI GTCTC 3 cut(s) 151, 768, 793
BfaI CTAG 5 cut(s) 624, 771, 804, 869, 882
BfuAI ACCTGC 2 cut(s) 238, 722
BfuI GTATCC 1 cut(s) 692
BisI GCNGC 2 cut(s) 210, 301
BlpI GCTNAGC 1 cut(s) 483
BlsI GCNGC 2 cut(s) 211, 302
BmcAI AGTACT 1 cut(s) 7
Bme1390I CCNGG 2 cut(s) 390, 843
BmeT110I CYCGRG 3 cut(s) 277, 318, 607
BmiI GGNNCC 3 cut(s) 195, 642, 665
BmrFI CCNGG 2 cut(s) 390, 843
BmsI GCATC 2 cut(s) 736, 758
BmtI GCTAGC 1 cut(s) 872
BpiI GAAGAC 1 cut(s) 944
BplI GAGNNNNNCTC 2 cut(s) 271, 303
BpmI CTGGAG 1 cut(s) 702
Bpu1102I GCTNAGC 1 cut(s) 483
BpuEI CTTGAG 1 cut(s) 202
BsaBI GATNNNNATC 1 cut(s) 717
BsaI GGTCTC 1 cut(s) 151
BsaJI CCNNGG 5 cut(s) 11, 363, 569, 659, 842
BsaWI WCCGGW 1 cut(s) 92
Bsc4I CCNNNNNNNGG 6 cut(s) 122, 299, 369, 425, 517, 713
Bse118I RCCGGY 1 cut(s) 546
Bse1I ACTGG 1 cut(s) 656
Bse3DI GCAATG 2 cut(s) 113, 805
Bse8I GATNNNNATC 1 cut(s) 717
BseBI CCWGG 2 cut(s) 390, 843
BseDI CCNNGG 5 cut(s) 11, 363, 569, 659, 842
BseGI GGATG 4 cut(s) 355, 361, 378, 618
BseJI GATNNNNATC 1 cut(s) 717
BseLI CCNNNNNNNGG 6 cut(s) 122, 299, 369, 425, 517, 713
BseMI GCAATG 2 cut(s) 113, 805
BseMII CTCAG 1 cut(s) 497
BseNI ACTGG 1 cut(s) 656
BseSI GKGCMC 1 cut(s) 399
BseXI GCAGC 1 cut(s) 196
BsgI GTGCAG 1 cut(s) 83
Bsh1236I CGCG 1 cut(s) 912
BshNI GGYRCC 1 cut(s) 663
BsiHKAI GWGCWC 3 cut(s) 399, 525, 891
BsiHKCI CYCGRG 3 cut(s) 277, 318, 607
BsiSI CCGG 3 cut(s) 93, 547, 892
BslFI GGGAC 1 cut(s) 251
BslI CCNNNNNNNGG 6 cut(s) 122, 299, 369, 425, 517, 713
BsmAI GTCTC 3 cut(s) 151, 768, 793
BsmBI CGTCTC 2 cut(s) 768, 793
BsmFI GGGAC 1 cut(s) 251
BsmI GAATGC 1 cut(s) 937
Bso31I GGTCTC 1 cut(s) 151
BsoBI CYCGRG 3 cut(s) 277, 318, 607
Bsp1286I GDGCHC 4 cut(s) 363, 399, 525, 891
Bsp143I GATC 6 cut(s) 66, 125, 269, 310, 433, 737
Bsp1720I GCTNAGC 1 cut(s) 483
Bsp19I CCATGG 1 cut(s) 11
Bsp68I TCGCGA 1 cut(s) 912
BspACI CCGC 4 cut(s) 300, 303, 511, 693
BspCNI CTCAG 1 cut(s) 496
BspFNI CGCG 1 cut(s) 912
BspLI GGNNCC 3 cut(s) 195, 642, 665
BspMI ACCTGC 2 cut(s) 238, 722
BspOI GCTAGC 1 cut(s) 872
BspPI GGATC 3 cut(s) 133, 305, 745
BspQI GCTCTTC 1 cut(s) 561
BspT107I GGYRCC 1 cut(s) 663
BspTNI GGTCTC 1 cut(s) 151
BsrDI GCAATG 2 cut(s) 113, 805
BsrFI RCCGGY 1 cut(s) 546
BsrI ACTGG 1 cut(s) 656
BssAI RCCGGY 1 cut(s) 546
BssECI CCNNGG 5 cut(s) 11, 363, 569, 659, 842
BssMI GATC 6 cut(s) 66, 125, 269, 310, 433, 737
BssT1I CCWWGG 3 cut(s) 11, 363, 569
Bst2UI CCWGG 2 cut(s) 390, 843
Bst6I CTCTTC 1 cut(s) 561
BstAPI GCANNNNNTGC 1 cut(s) 117
BstC8I GCNNGC 4 cut(s) 214, 480, 552, 870
BstDEI CTNAG 1 cut(s) 483
BstDSI CCRYGG 2 cut(s) 11, 659
BstF5I GGATG 4 cut(s) 355, 361, 378, 618
BstFNI CGCG 1 cut(s) 912
BstKTI GATC 6 cut(s) 69, 128, 272, 313, 436, 740
BstMAI GTCTC 3 cut(s) 151, 768, 793
BstMBI GATC 6 cut(s) 66, 125, 269, 310, 433, 737
BstMWI GCNNNNNNNGC 2 cut(s) 117, 484
BstNI CCWGG 2 cut(s) 390, 843
BstSCI CCNGG 2 cut(s) 388, 841
BstSLI GKGCMC 1 cut(s) 399
BstUI CGCG 1 cut(s) 912
BstV1I GCAGC 1 cut(s) 196
BstV2I GAAGAC 1 cut(s) 944
BstX2I RGATCY 1 cut(s) 737
BstXI CCANNNNNNTGG 1 cut(s) 651
BstYI RGATCY 1 cut(s) 737
BsuI GTATCC 1 cut(s) 692
BtgI CCRYGG 2 cut(s) 11, 659
BtgZI GCGATG 1 cut(s) 502
BtsCI GGATG 4 cut(s) 355, 361, 378, 618
BtuMI TCGCGA 1 cut(s) 912
BveI ACCTGC 2 cut(s) 238, 722
Cac8I GCNNGC 4 cut(s) 214, 480, 552, 870
Cfr10I RCCGGY 1 cut(s) 546
Csp6I GTAC 2 cut(s) 6, 100
CviAII CATG 3 cut(s) 12, 117, 942
CviQI GTAC 2 cut(s) 6, 100
DdeI CTNAG 1 cut(s) 483
DpnI GATC 6 cut(s) 68, 127, 271, 312, 435, 739
DpnII GATC 6 cut(s) 66, 125, 269, 310, 433, 737
Eam1104I CTCTTC 1 cut(s) 561
EarI CTCTTC 1 cut(s) 561
Ecl136II GAGCTC 2 cut(s) 523, 889
Eco130I CCWWGG 3 cut(s) 11, 363, 569
Eco24I GRGCYC 3 cut(s) 363, 525, 891
Eco31I GGTCTC 1 cut(s) 151
Eco53kI GAGCTC 2 cut(s) 523, 889
Eco57I CTGAAG 3 cut(s) 207, 436, 597
Eco88I CYCGRG 3 cut(s) 277, 318, 607
EcoICRI GAGCTC 2 cut(s) 523, 889
EcoRI GAATTC 1 cut(s) 444
EcoRII CCWGG 2 cut(s) 388, 841
EcoT14I CCWWGG 3 cut(s) 11, 363, 569
EcoT22I ATGCAT 1 cut(s) 751
EcoT38I GRGCYC 3 cut(s) 363, 525, 891
ErhI CCWWGG 3 cut(s) 11, 363, 569
Esp3I CGTCTC 2 cut(s) 768, 793
FaeI CATG 3 cut(s) 15, 120, 945
FalI AAGNNNNNCTT 2 cut(s) 145, 177
FaqI GGGAC 1 cut(s) 251
FatI CATG 3 cut(s) 11, 116, 941
FauNDI CATATG 1 cut(s) 295
Fnu4HI GCNGC 2 cut(s) 210, 301
FokI GGATG 4 cut(s) 362, 368, 385, 625
FriOI GRGCYC 3 cut(s) 363, 525, 891
Fsp4HI GCNGC 2 cut(s) 210, 301
FspBI CTAG 5 cut(s) 624, 771, 804, 869, 882
GluI GCNGC 2 cut(s) 210, 301
GsuI CTGGAG 1 cut(s) 702
HapII CCGG 3 cut(s) 93, 547, 892
Hin1II CATG 3 cut(s) 15, 120, 945
HindIII AAGCTT 1 cut(s) 780
HinfI GANTC 7 cut(s) 275, 282, 323, 540, 596, 617, 815
HpaII CCGG 3 cut(s) 93, 547, 892
HphI GGTGA 3 cut(s) 235, 320, 509
Hpy166II GTNNAC 1 cut(s) 397
Hpy188I TCNGA 5 cut(s) 187, 274, 577, 712, 820
Hpy188III TCNNGA 8 cut(s) 142, 279, 320, 535, 681, 753, 771, 911
Hpy8I GTNNAC 1 cut(s) 397
HpyAV CCTTC 1 cut(s) 182
HpyCH4IV ACGT 2 cut(s) 41, 329
HpyCH4V TGCA 8 cut(s) 64, 111, 120, 212, 266, 397, 731, 749
HpyF10VI GCNNNNNNNGC 2 cut(s) 117, 484
HpyF3I CTNAG 1 cut(s) 483
HpySE526I ACGT 2 cut(s) 41, 329
Hsp92II CATG 3 cut(s) 15, 120, 945
Kzo9I GATC 6 cut(s) 66, 125, 269, 310, 433, 737
LguI GCTCTTC 1 cut(s) 561
LmnI GCTCC 4 cut(s) 520, 683, 886, 894
Lsp1109I GCAGC 1 cut(s) 196
LweI GCATC 2 cut(s) 736, 758
MaeI CTAG 5 cut(s) 624, 771, 804, 869, 882
MaeII ACGT 2 cut(s) 41, 329
MalI GATC 6 cut(s) 68, 127, 271, 312, 435, 739
MboI GATC 6 cut(s) 66, 125, 269, 310, 433, 737
MboII GAAGA 4 cut(s) 548, 590, 949, 962
MflI RGATCY 1 cut(s) 737
MhlI GDGCHC 4 cut(s) 363, 399, 525, 891
MluCI AATT 3 cut(s) 86, 444, 502
MlyI GAGTC 3 cut(s) 269, 611, 824
MmeI TCCRAC 2 cut(s) 338, 668
Mph1103I ATGCAT 1 cut(s) 751
MroXI GAANNNNTTC 1 cut(s) 192
MseI TTAA 4 cut(s) 54, 438, 468, 985
MslI CAYNNNNRTG 1 cut(s) 407
MspI CCGG 3 cut(s) 93, 547, 892
MspR9I CCNGG 2 cut(s) 390, 843
Mva1269I GAATGC 1 cut(s) 937
MvaI CCWGG 2 cut(s) 390, 843
MvnI CGCG 1 cut(s) 912
MwoI GCNNNNNNNGC 2 cut(s) 117, 484
NcoI CCATGG 1 cut(s) 11
NdeI CATATG 1 cut(s) 295
NdeII GATC 6 cut(s) 66, 125, 269, 310, 433, 737
NheI GCTAGC 1 cut(s) 868
NlaIII CATG 3 cut(s) 15, 120, 945
NlaIV GGNNCC 3 cut(s) 195, 642, 665
NmeAIII GCCGAG 1 cut(s) 482
NruI TCGCGA 1 cut(s) 912
NsiI ATGCAT 1 cut(s) 751
OliI CACNNNNGTG 1 cut(s) 407
PaeR7I CTCGAG 3 cut(s) 277, 318, 607
PaqCI CACCTGC 2 cut(s) 238, 722
PciSI GCTCTTC 1 cut(s) 561
PcsI WCGNNNNNNNCGW 2 cut(s) 454, 783
PctI GAATGC 1 cut(s) 937
PdmI GAANNNNTTC 1 cut(s) 192
PfeI GAWTC 4 cut(s) 282, 323, 540, 596
PflMI CCANNNNNTGG 2 cut(s) 369, 713
PkrI GCNGC 2 cut(s) 211, 302
PleI GAGTC 3 cut(s) 269, 611, 823
PpsI GAGTC 3 cut(s) 269, 611, 823
Psp124BI GAGCTC 2 cut(s) 525, 891
Psp6I CCWGG 2 cut(s) 388, 841
PspGI CCWGG 2 cut(s) 388, 841
PspN4I GGNNCC 3 cut(s) 195, 642, 665
PspXI VCTCGAGB 1 cut(s) 607
PsuI RGATCY 1 cut(s) 737
RruI TCGCGA 1 cut(s) 912
RsaI GTAC 2 cut(s) 7, 101
RsaNI GTAC 2 cut(s) 6, 100
RseI CAYNNNNRTG 1 cut(s) 407
SacI GAGCTC 2 cut(s) 525, 891
SapI GCTCTTC 1 cut(s) 561
SaqAI TTAA 4 cut(s) 54, 438, 468, 985
SatI GCNGC 2 cut(s) 210, 301
Sau3AI GATC 6 cut(s) 66, 125, 269, 310, 433, 737
ScaI AGTACT 1 cut(s) 7
SchI GAGTC 3 cut(s) 269, 611, 824
ScrFI CCNGG 2 cut(s) 390, 843
SduI GDGCHC 4 cut(s) 363, 399, 525, 891
SfaNI GCATC 2 cut(s) 736, 758
Sfr274I CTCGAG 3 cut(s) 277, 318, 607
SlaI CTCGAG 3 cut(s) 277, 318, 607
SmiMI CAYNNNNRTG 1 cut(s) 407
SmlI CTYRAG 4 cut(s) 217, 277, 318, 607
SmoI CTYRAG 4 cut(s) 217, 277, 318, 607
Sse9I AATT 3 cut(s) 86, 444, 502
SsiI CCGC 4 cut(s) 300, 303, 511, 693
SspMI CTAG 5 cut(s) 624, 771, 804, 869, 882
SstI GAGCTC 2 cut(s) 525, 891
StyD4I CCNGG 2 cut(s) 388, 841
StyI CCWWGG 3 cut(s) 11, 363, 569
TaiI ACGT 2 cut(s) 44, 332
TaqI TCGA 5 cut(s) 278, 289, 319, 608, 862
TasI AATT 3 cut(s) 86, 444, 502
TatI WGTACW 1 cut(s) 5
TauI GCSGC 1 cut(s) 303
TfiI GAWTC 4 cut(s) 282, 323, 540, 596
Tru1I TTAA 4 cut(s) 54, 438, 468, 985
Tru9I TTAA 4 cut(s) 54, 438, 468, 985
TseI GCWGC 1 cut(s) 209
TspGWI ACGGA 1 cut(s) 775
Van91I CCANNNNNTGG 2 cut(s) 369, 713
VneI GTGCAC 1 cut(s) 395
XapI RAATTY 2 cut(s) 86, 444
XbaI TCTAGA 1 cut(s) 770
XcmI CCANNNNNNNNNTGG 1 cut(s) 370
XhoI CTCGAG 3 cut(s) 277, 318, 607
XmnI GAANNNNTTC 1 cut(s) 192
XspI CTAG 5 cut(s) 624, 771, 804, 869, 882
ZrmI AGTACT 1 cut(s) 7
Zsp2I ATGCAT 1 cut(s) 751
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.