Rorug07G0140800

Protein Brevis radix-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0005297
Physical Location & Seq
Forward (+)
11114732 .. 11116412
1681 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0140800.1

Sequence Viewer

Length: 939 bp
ATGGAAACAATGCAACAAAATCACCTCCCTTTCGAGTTCACCGAATTCGATATCCGTTCATCTCTATCCAACCTCATCCTAACCGGCGGCACAAACACCTTGGACTCAATCTTCTCCCATTTCCCACAAACCCACACAACCACCACCACCACCCCAGTTTCGGAGCCACTAGGCTCCTCCGTCTACCTCCTCCAGCGTGACCTCATCCAGAAGTTCAGCGAGCAAACCCGCGCAAACAACGGCGCCGTTTCCCGCCTTCCGACGAACCCAGTTCAAATCCCAAGCTATAGCTCCTCTTCCTCTTGCTCCACCACGTACCTAGCCCCCACCAAGAAGAAGCTGTACAGAGGAGTGAGGCAGAGGCATTGGGGCAAATGGGTCGCCGAGATCAGACTCCCCCAGAACAGAATGAGAGTCTGGCTCGGCACCTACGACACCGCCGAAGCCGCCGCCTACGCCTACGACCGCGCCGCCTACAAGCTCCGTGGCGAGTACGCGCGCCTCAACTTCCCCAACCTCAAGGACCCCACCAAGCTGGGTTTCGCTGACGGCTCGAGGCTCAACGCCGTGAAGGCCTCAGTGGACGCCAAGATTCAGGCGATTTGTCAGAAGGTGAAGCGGGAAAAGGCCAAGAAGAATAATGCCAAGAAGAGCAGTAGTGGTTCGGTTAAGACTGAAAAAGTGACCAAAGTGGATTCGTCATCTTCCTCTTCGTCGCATTTGACTTTTTACGACGGTTTGGGGCAGGAGCTGCTGTCGTCTCCAACGCCGACAGGGTCGGAAGGGAGGTGTGAGAATTCATCCACGCCGTCGGTTTCGAACGACGGTCTGATGAGCGTGGCCATGGCGGAGATGGAGGACTTGGAATTCGAAGGGTGTTCACTTGCAAGAATGCCTTCATTTGACCCAGAGTTGATTTGGAAAGTCCTTGCTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BRX BRX_N

Protein Analysis

312

Amino Acids

34.49

Weight (kDa)

9.13

Isoelectric Point (pI)

44.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 114 - 163 6.8e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 242, 425
AccI GTMKAC 1 cut(s) 183
AccII CGCG 4 cut(s) 231, 468, 497, 499
AcoI YGGCCR 1 cut(s) 840
AcsI RAATTY 3 cut(s) 44, 796, 866
AcyI GRCGYC 2 cut(s) 243, 585
AfaI GTAC 3 cut(s) 317, 344, 494
AfiI CCNNNNNNNGG 1 cut(s) 160
AgsI TTSAA 1 cut(s) 275
AjuI GAANNNNNNNTTGG 2 cut(s) 524, 556
AluBI AGCT 6 cut(s) 285, 291, 340, 481, 535, 751
AluI AGCT 6 cut(s) 285, 291, 340, 481, 535, 751
Alw26I GTCTC 1 cut(s) 765
AlwNI CAGNNNCTG 1 cut(s) 751
Ama87I CYCGRG 1 cut(s) 553
AoxI GGCC 3 cut(s) 573, 627, 840
ApeKI GCWGC 1 cut(s) 751
ApoI RAATTY 3 cut(s) 44, 796, 866
ArsI GACNNNNNNTTYG 2 cut(s) 851, 883
Asp700I GAANNNNTTC 1 cut(s) 895
AspLEI GCGC 5 cut(s) 233, 245, 470, 499, 501
AspS9I GGNCC 1 cut(s) 523
AsuHPI GGTGA 3 cut(s) 14, 31, 625
AsuII TTCGAA 2 cut(s) 818, 870
AvaI CYCGRG 1 cut(s) 553
AvaII GGWCC 1 cut(s) 523
BalI TGGCCA 1 cut(s) 842
BanI GGYRCC 2 cut(s) 242, 425
BarI GAAGNNNNNNTAC 2 cut(s) 326, 358
BbvI GCAGC 1 cut(s) 738
BccI CCATC 1 cut(s) 847
BceAI ACGGC 5 cut(s) 230, 256, 551, 565, 793
BcgI CGANNNNNNTGC 2 cut(s) 361, 395
BcoDI GTCTC 1 cut(s) 765
BfaI CTAG 2 cut(s) 170, 320
BfmI CTRYAG 1 cut(s) 286
BfoI RGCGCY 1 cut(s) 246
BglI GCCNNNNNGGC 1 cut(s) 572
BisI GCNGC 5 cut(s) 88, 447, 450, 471, 752
BlsI GCNGC 5 cut(s) 89, 448, 451, 472, 753
Bme18I GGWCC 1 cut(s) 523
BmeT110I CYCGRG 1 cut(s) 553
BmgT120I GGNCC 1 cut(s) 523
BmiI GGNNCC 5 cut(s) 165, 175, 244, 427, 525
BmrI ACTGGG 2 cut(s) 149, 263
BmuI ACTGGG 2 cut(s) 149, 263
BplI GAGNNNNNCTC 2 cut(s) 405, 437
BpmI CTGGAG 1 cut(s) 176
Bpu14I TTCGAA 2 cut(s) 818, 870
BpuEI CTTGAG 1 cut(s) 503
BsaAI YACGTR 1 cut(s) 315
BsaHI GRCGYC 2 cut(s) 243, 585
BsaJI CCNNGG 3 cut(s) 99, 484, 843
BsaXI ACNNNNNCTCC 2 cut(s) 740, 770
Bsc4I CCNNNNNNNGG 1 cut(s) 160
Bse118I RCCGGY 1 cut(s) 83
Bse1I ACTGG 2 cut(s) 155, 269
BseDI CCNNGG 3 cut(s) 99, 484, 843
BseGI GGATG 3 cut(s) 75, 204, 800
BseLI CCNNNNNNNGG 1 cut(s) 160
BseMII CTCAG 1 cut(s) 591
BseNI ACTGG 2 cut(s) 155, 269
BsePI GCGCGC 1 cut(s) 497
BseRI GAGGAG 4 cut(s) 166, 179, 283, 363
BseXI GCAGC 1 cut(s) 738
BseYI CCCAGC 1 cut(s) 535
Bsh1236I CGCG 4 cut(s) 231, 468, 497, 499
Bsh1285I CGRYCG 1 cut(s) 466
BshFI GGCC 3 cut(s) 575, 629, 842
BshNI GGYRCC 2 cut(s) 242, 425
BsiEI CGRYCG 1 cut(s) 466
BsiHKCI CYCGRG 1 cut(s) 553
BsiSI CCGG 1 cut(s) 84
BslI CCNNNNNNNGG 1 cut(s) 160
BsmAI GTCTC 1 cut(s) 765
BsmBI CGTCTC 1 cut(s) 765
BsmI GAATGC 1 cut(s) 897
BsnI GGCC 3 cut(s) 575, 629, 842
BsoBI CYCGRG 1 cut(s) 553
Bsp119I TTCGAA 2 cut(s) 818, 870
Bsp1407I TGTACA 1 cut(s) 342
Bsp143I GATC 1 cut(s) 387
Bsp19I CCATGG 1 cut(s) 843
BspANI GGCC 3 cut(s) 575, 629, 842
BspCNI CTCAG 1 cut(s) 590
BspFNI CGCG 4 cut(s) 231, 468, 497, 499
BspLI GGNNCC 5 cut(s) 165, 175, 244, 427, 525
BspQI GCTCTTC 1 cut(s) 644
BspT104I TTCGAA 2 cut(s) 818, 870
BspT107I GGYRCC 2 cut(s) 242, 425
BsrFI RCCGGY 1 cut(s) 83
BsrGI TGTACA 1 cut(s) 342
BsrI ACTGG 2 cut(s) 155, 269
BssAI RCCGGY 1 cut(s) 83
BssECI CCNNGG 3 cut(s) 99, 484, 843
BssHII GCGCGC 1 cut(s) 497
BssMI GATC 1 cut(s) 387
BssNI GRCGYC 2 cut(s) 243, 585
BssT1I CCWWGG 2 cut(s) 99, 843
Bst4CI ACNGT 2 cut(s) 737, 827
Bst6I CTCTTC 3 cut(s) 301, 644, 715
BstACI GRCGYC 2 cut(s) 243, 585
BstAPI GCANNNNNTGC 1 cut(s) 751
BstAUI TGTACA 1 cut(s) 342
BstBAI YACGTR 1 cut(s) 315
BstBI TTCGAA 2 cut(s) 818, 870
BstC8I GCNNGC 2 cut(s) 221, 499
BstDEI CTNAG 1 cut(s) 577
BstDSI CCRYGG 2 cut(s) 484, 843
BstF5I GGATG 3 cut(s) 75, 204, 800
BstFNI CGCG 4 cut(s) 231, 468, 497, 499
BstH2I RGCGCY 1 cut(s) 246
BstHHI GCGC 5 cut(s) 233, 245, 470, 499, 501
BstKTI GATC 1 cut(s) 390
BstMAI GTCTC 1 cut(s) 765
BstMBI GATC 1 cut(s) 387
BstMCI CGRYCG 1 cut(s) 466
BstMWI GCNNNNNNNGC 4 cut(s) 446, 455, 572, 751
BstSFI CTRYAG 1 cut(s) 286
BstUI CGCG 4 cut(s) 231, 468, 497, 499
BstV1I GCAGC 1 cut(s) 738
BstXI CCANNNNNNTGG 1 cut(s) 535
BsuRI GGCC 3 cut(s) 575, 629, 842
BtgI CCRYGG 2 cut(s) 484, 843
BtsCI GGATG 3 cut(s) 75, 204, 800
BtsIMutI CAGTG 1 cut(s) 585
Cac8I GCNNGC 2 cut(s) 221, 499
CaiI CAGNNNCTG 1 cut(s) 751
CfoI GCGC 5 cut(s) 233, 245, 470, 499, 501
Cfr10I RCCGGY 1 cut(s) 83
Cfr13I GGNCC 1 cut(s) 523
CseI GACGC 1 cut(s) 593
Csp6I GTAC 3 cut(s) 316, 343, 493
CspCI CAANNNNNGTGG 2 cut(s) 466, 501
CviAII CATG 1 cut(s) 844
CviQI GTAC 3 cut(s) 316, 343, 493
DdeI CTNAG 1 cut(s) 577
DinI GGCGCC 1 cut(s) 244
DpnI GATC 1 cut(s) 389
DpnII GATC 1 cut(s) 387
EaeI YGGCCR 1 cut(s) 840
Eam1104I CTCTTC 3 cut(s) 301, 644, 715
EarI CTCTTC 3 cut(s) 301, 644, 715
EciI GGCGGA 1 cut(s) 863
Eco130I CCWWGG 2 cut(s) 99, 843
Eco147I AGGCCT 1 cut(s) 575
Eco32I GATATC 1 cut(s) 52
Eco47I GGWCC 1 cut(s) 523
Eco88I CYCGRG 1 cut(s) 553
EcoO109I RGGNCCY 1 cut(s) 523
EcoRI GAATTC 3 cut(s) 44, 796, 866
EcoRV GATATC 1 cut(s) 52
EcoT14I CCWWGG 2 cut(s) 99, 843
EgeI GGCGCC 1 cut(s) 244
EheI GGCGCC 1 cut(s) 244
ErhI CCWWGG 2 cut(s) 99, 843
Esp3I CGTCTC 1 cut(s) 765
FaeI CATG 1 cut(s) 847
FaiI YATR 2 cut(s) 288, 845
FalI AAGNNNNNCTT 2 cut(s) 880, 912
FatI CATG 1 cut(s) 843
FauI CCCGC 3 cut(s) 236, 260, 612
FblI GTMKAC 1 cut(s) 183
Fnu4HI GCNGC 5 cut(s) 88, 447, 450, 471, 752
FokI GGATG 3 cut(s) 62, 191, 787
Fsp4HI GCNGC 5 cut(s) 88, 447, 450, 471, 752
FspBI CTAG 2 cut(s) 170, 320
GlaI GCGC 5 cut(s) 232, 244, 469, 498, 500
GluI GCNGC 5 cut(s) 88, 447, 450, 471, 752
GsaI CCCAGC 1 cut(s) 539
GsuI CTGGAG 1 cut(s) 176
HaeII RGCGCY 1 cut(s) 246
HaeIII GGCC 3 cut(s) 575, 629, 842
HapII CCGG 1 cut(s) 84
HgaI GACGC 1 cut(s) 593
HhaI GCGC 5 cut(s) 233, 245, 470, 499, 501
Hin1I GRCGYC 2 cut(s) 243, 585
Hin1II CATG 1 cut(s) 847
Hin6I GCGC 5 cut(s) 231, 243, 468, 497, 499
HinP1I GCGC 5 cut(s) 231, 243, 468, 497, 499
HinfI GANTC 5 cut(s) 104, 393, 414, 592, 695
HpaII CCGG 1 cut(s) 84
HphI GGTGA 3 cut(s) 14, 31, 625
Hpy166II GTNNAC 4 cut(s) 39, 184, 583, 881
Hpy188I TCNGA 6 cut(s) 163, 261, 392, 609, 781, 831
Hpy188III TCNNGA 1 cut(s) 208
Hpy8I GTNNAC 4 cut(s) 39, 184, 583, 881
Hpy99I CGWCG 5 cut(s) 265, 718, 737, 814, 827
HpyAV CCTTC 6 cut(s) 266, 565, 604, 776, 866, 906
HpyCH4III ACNGT 2 cut(s) 737, 827
HpyCH4IV ACGT 1 cut(s) 314
HpyCH4V TGCA 2 cut(s) 13, 887
HpyF10VI GCNNNNNNNGC 4 cut(s) 446, 455, 572, 751
HpyF3I CTNAG 1 cut(s) 577
HpySE526I ACGT 1 cut(s) 314
Hsp92I GRCGYC 2 cut(s) 243, 585
Hsp92II CATG 1 cut(s) 847
HspAI GCGC 5 cut(s) 231, 243, 468, 497, 499
KasI GGCGCC 1 cut(s) 242
Kzo9I GATC 1 cut(s) 387
LguI GCTCTTC 1 cut(s) 644
LmnI GCTCC 6 cut(s) 163, 179, 296, 311, 486, 748
Lsp1109I GCAGC 1 cut(s) 738
MaeI CTAG 2 cut(s) 170, 320
MaeII ACGT 1 cut(s) 314
MaeIII GTNAC 2 cut(s) 197, 682
MalI GATC 1 cut(s) 389
MboI GATC 1 cut(s) 387
MboII GAAGA 7 cut(s) 103, 288, 346, 646, 661, 696, 702
MlsI TGGCCA 1 cut(s) 842
MluCI AATT 4 cut(s) 44, 796, 866, 934
MluNI TGGCCA 1 cut(s) 842
Mly113I GGCGCC 1 cut(s) 243
MlyI GAGTC 3 cut(s) 98, 387, 423
MmeI TCCRAC 4 cut(s) 93, 284, 759, 788
Mox20I TGGCCA 1 cut(s) 842
MroXI GAANNNNTTC 1 cut(s) 895
MscI TGGCCA 1 cut(s) 842
MseI TTAA 1 cut(s) 669
Msp20I TGGCCA 1 cut(s) 842
MspI CCGG 1 cut(s) 84
Mva1269I GAATGC 1 cut(s) 897
MvnI CGCG 4 cut(s) 231, 468, 497, 499
MwoI GCNNNNNNNGC 4 cut(s) 446, 455, 572, 751
NarI GGCGCC 1 cut(s) 243
NcoI CCATGG 1 cut(s) 843
NdeII GATC 1 cut(s) 387
NlaIII CATG 1 cut(s) 847
NlaIV GGNNCC 5 cut(s) 165, 175, 244, 427, 525
NmeAIII GCCGAG 2 cut(s) 402, 409
NmuCI GTSAC 2 cut(s) 197, 682
NspV TTCGAA 2 cut(s) 818, 870
PaeR7I CTCGAG 1 cut(s) 553
PauI GCGCGC 1 cut(s) 497
PceI AGGCCT 1 cut(s) 575
PciSI GCTCTTC 1 cut(s) 644
PcsI WCGNNNNNNNCGW 3 cut(s) 39, 429, 438
PctI GAATGC 1 cut(s) 897
PdmI GAANNNNTTC 1 cut(s) 895
PfeI GAWTC 2 cut(s) 592, 695
PflFI GACNNNGTC 1 cut(s) 775
PkrI GCNGC 5 cut(s) 89, 448, 451, 472, 753
PleI GAGTC 3 cut(s) 98, 387, 422
PluTI GGCGCC 1 cut(s) 246
PpsI GAGTC 3 cut(s) 98, 387, 422
Ppu21I YACGTR 1 cut(s) 315
PpuMI RGGWCCY 1 cut(s) 523
Psp5II RGGWCCY 1 cut(s) 523
PspFI CCCAGC 1 cut(s) 535
PspN4I GGNNCC 5 cut(s) 165, 175, 244, 427, 525
PspPI GGNCC 1 cut(s) 523
PspPPI RGGWCCY 1 cut(s) 523
PspXI VCTCGAGB 1 cut(s) 553
PstNI CAGNNNCTG 1 cut(s) 751
PsyI GACNNNGTC 1 cut(s) 775
PteI GCGCGC 1 cut(s) 497
RsaI GTAC 3 cut(s) 317, 344, 494
RsaNI GTAC 3 cut(s) 316, 343, 493
SapI GCTCTTC 1 cut(s) 644
SaqAI TTAA 1 cut(s) 669
SatI GCNGC 5 cut(s) 88, 447, 450, 471, 752
Sau3AI GATC 1 cut(s) 387
Sau96I GGNCC 1 cut(s) 523
SchI GAGTC 3 cut(s) 98, 387, 423
SfcI CTRYAG 1 cut(s) 286
SfoI GGCGCC 1 cut(s) 244
Sfr274I CTCGAG 1 cut(s) 553
SfuI TTCGAA 2 cut(s) 818, 870
SinI GGWCC 1 cut(s) 523
SlaI CTCGAG 1 cut(s) 553
SmlI CTYRAG 2 cut(s) 518, 553
SmoI CTYRAG 2 cut(s) 518, 553
Sse9I AATT 4 cut(s) 44, 796, 866, 934
SseBI AGGCCT 1 cut(s) 575
SspDI GGCGCC 1 cut(s) 242
SspMI CTAG 2 cut(s) 170, 320
StuI AGGCCT 1 cut(s) 575
StyI CCWWGG 2 cut(s) 99, 843
TaaI ACNGT 2 cut(s) 737, 827
TaiI ACGT 1 cut(s) 317
TaqI TCGA 5 cut(s) 33, 48, 554, 818, 870
TasI AATT 4 cut(s) 44, 796, 866, 934
TatI WGTACW 1 cut(s) 342
TauI GCSGC 4 cut(s) 90, 449, 452, 473
TfiI GAWTC 2 cut(s) 592, 695
Tru1I TTAA 1 cut(s) 669
Tru9I TTAA 1 cut(s) 669
TscAI CASTG 1 cut(s) 585
TseFI GTSAC 2 cut(s) 197, 682
TseI GCWGC 1 cut(s) 751
Tsp45I GTSAC 2 cut(s) 197, 682
TspDTI ATGAA 3 cut(s) 48, 789, 888
TspGWI ACGGA 3 cut(s) 44, 169, 473
TspRI CASTG 1 cut(s) 585
Tth111I GACNNNGTC 1 cut(s) 775
VpaK11BI GGWCC 1 cut(s) 523
XapI RAATTY 3 cut(s) 44, 796, 866
XcmI CCANNNNNNNNNTGG 2 cut(s) 850, 915
XhoI CTCGAG 1 cut(s) 553
XmiI GTMKAC 1 cut(s) 183
XmnI GAANNNNTTC 1 cut(s) 895
XspI CTAG 2 cut(s) 170, 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.