pycom06g01150

Protein Brevis radix-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0005297
Physical Location & Seq
Reverse (-)
1213375 .. 1217918
4544 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g01150.1

Sequence Viewer

Length: 1113 bp
ATGTTTACGTGCATAGCATGTACGAAGCAAACGGACGATGGAGGAGAAGAAGGAGCAGCGCGTGGCAGCGGCACCCCAAATACAAAAGAAGCCGTCAAAAGCCTGACGGCGCAGATTAAGGATATGGCACTGAAATTCTCTGGTGCGTACAAGCAATGCAAACCATGCACAGGGTCAAGCAATTATAAGAAAGGACGGCCGAGATACCCGGATTTTGATACTGCTTCTGAAGGGATGCCGTACCCCTATATGGGAGGTGCAAGCACAAGTTCTACACCTGCTTGGGACTTCACCTCTAATCATCAGTTGGGTGCAAGATCGGACTCTCGATTTACTAGACCATATGGTGGCGGTGATCGTGCATCAATATCAGCACAGTCTTGTGATGTTGTGCTAGAGGATGAGGATGAGCCTAAGGAGTGGATGGCACAGGTGGAACCCGGCGTACACATTACTTTTGTATCTCTCCCTAATGGGGGAAATGATCTCAAACGAATTCGTTTCAGCCGAGAGATGTTCAACAAATGGCAAGCGCAGCGATGGTGGGGTGAGAATTATGACCGCATCATGGAGCTCTACAATGTCCAGAGATTCAACCGGCAAGCTCTTCACACTCCCCCAAGATCCGAAGATGAGCAGAGAGATTCTTCTTACTCAAGGATGGGATCTGCTATGGAAAGCCCTATGGCTCCATCAGTGAACAAAGATTGGACACCGAGGCACAACTATAAACCGTCTGGAACTGGAAGTAGAGGGTATTTCCCCTCTGATGGTTTGGATCATGGTGGTGGCAGTGGTGGTCACTACTATAATGCTGGTGGGTCAAGTGCTTATGGAGCAGGTGGCCACAAGGGAGAGGCATCATCTTTTGATGCATCGCGGACAACAACCTCCTCTCGAGATGAAGCTTCAGTCTCAATTAGCAATGCTAGTGAAGTGGAGTCGGAATGGGTTGAGGAAGATGAGCCTGGGGTGTATATAACCATTAGGCAGCTAGCGGATGGCACTCGGGAGCTCAGGCGTGTCAGATTCAGCCGCGAAAGGTTTGGGGAGATGAATGCGAAGACATGGTGGGAAGAAAACAGAGAGAGAATACAAGCACAATACCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BRX BRX_N

Protein Analysis

371

Amino Acids

41.23

Weight (kDa)

5.91

Isoelectric Point (pI)

51.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BRX_N PF13713 23 - 56 1.8e-17 Transcription factor BRX N-terminal domain
BRX PF08381 139 - 193 3.3e-26 Transcription factor regulating root and shoot growth via Pin3
BRX PF08381 314 - 369 4.9e-27 Transcription factor regulating root and shoot growth via Pin3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 186
AarI CACCTGC 2 cut(s) 286, 830
Acc36I ACCTGC 2 cut(s) 286, 830
AccB1I GGYRCC 1 cut(s) 71
AccB7I CCANNNNNTGG 1 cut(s) 347
AccII CGCG 3 cut(s) 61, 880, 1038
AciI CCGC 6 cut(s) 69, 351, 562, 880, 998, 1036
AclWI GGATC 3 cut(s) 618, 673, 786
AcoI YGGCCR 2 cut(s) 197, 844
AcsI RAATTY 2 cut(s) 134, 495
AcuI CTGAAG 2 cut(s) 249, 894
AfaI GTAC 4 cut(s) 22, 149, 242, 447
AfiI CCNNNNNNNGG 8 cut(s) 170, 250, 251, 347, 475, 476, 568, 770
AgsI TTSAA 2 cut(s) 520, 595
AjnI CCWGG 1 cut(s) 967
AluBI AGCT 5 cut(s) 574, 605, 908, 994, 1015
AluI AGCT 5 cut(s) 574, 605, 908, 994, 1015
Alw21I GWGCWC 2 cut(s) 576, 1017
Alw26I GTCTC 1 cut(s) 919
AlwI GGATC 3 cut(s) 618, 673, 786
Ama87I CYCGRG 2 cut(s) 897, 1008
AoxI GGCC 2 cut(s) 197, 844
ApeKI GCWGC 4 cut(s) 56, 66, 535, 991
ApoI RAATTY 2 cut(s) 134, 495
AspLEI GCGC 3 cut(s) 61, 112, 535
AsuC2I CCSGG 2 cut(s) 209, 441
AsuHPI GGTGA 3 cut(s) 283, 365, 560
AsuNHI GCTAGC 1 cut(s) 994
AvaI CYCGRG 2 cut(s) 897, 1008
AxyI CCTNAGG 1 cut(s) 414
BaeI ACNNNNGTAYC 2 cut(s) 444, 477
BalI TGGCCA 1 cut(s) 846
BanI GGYRCC 1 cut(s) 71
BanII GRGCYC 2 cut(s) 576, 1017
BbsI GAAGAC 1 cut(s) 1070
Bbv12I GWGCWC 2 cut(s) 576, 1017
BbvI GCAGC 4 cut(s) 68, 78, 547, 1003
BccI CCATC 7 cut(s) 32, 418, 534, 655, 700, 764, 995
BceAI ACGGC 4 cut(s) 77, 123, 212, 223
BciT130I CCWGG 1 cut(s) 969
BcnI CCSGG 2 cut(s) 209, 441
BcoDI GTCTC 1 cut(s) 919
BfaI CTAG 4 cut(s) 336, 395, 930, 995
BfuAI ACCTGC 2 cut(s) 286, 830
BisI GCNGC 6 cut(s) 57, 67, 70, 536, 992, 1036
BlsI GCNGC 6 cut(s) 58, 68, 71, 537, 993, 1037
Bme1390I CCNGG 3 cut(s) 209, 441, 969
BmeT110I CYCGRG 2 cut(s) 897, 1008
BmiI GGNNCC 3 cut(s) 73, 438, 690
BmrFI CCNGG 3 cut(s) 209, 441, 969
BmsI GCATC 6 cut(s) 225, 371, 573, 862, 869, 884
BmtI GCTAGC 1 cut(s) 998
BpiI GAAGAC 1 cut(s) 1070
Bpu10I CCTNAGC 1 cut(s) 1016
BpuEI CTTGAG 1 cut(s) 640
BpuMI CCSGG 2 cut(s) 209, 441
BsaAI YACGTR 1 cut(s) 9
BsaJI CCNNGG 2 cut(s) 716, 968
Bsc4I CCNNNNNNNGG 8 cut(s) 170, 250, 251, 347, 475, 476, 568, 770
Bse118I RCCGGY 1 cut(s) 597
Bse1I ACTGG 1 cut(s) 748
Bse21I CCTNAGG 1 cut(s) 414
Bse3DI GCAATG 2 cut(s) 161, 931
BseBI CCWGG 1 cut(s) 969
BseDI CCNNGG 2 cut(s) 716, 968
BseGI GGATG 6 cut(s) 240, 406, 412, 429, 666, 1006
BseLI CCNNNNNNNGG 8 cut(s) 170, 250, 251, 347, 475, 476, 568, 770
BseMI GCAATG 2 cut(s) 161, 931
BseMII CTCAG 1 cut(s) 1030
BseNI ACTGG 1 cut(s) 748
BseRI GAGGAG 2 cut(s) 57, 883
BseX3I CGGCCG 1 cut(s) 197
BseXI GCAGC 4 cut(s) 68, 78, 547, 1003
Bsh1236I CGCG 3 cut(s) 61, 880, 1038
Bsh1285I CGRYCG 1 cut(s) 200
BshFI GGCC 2 cut(s) 199, 846
BshNI GGYRCC 1 cut(s) 71
BsiEI CGRYCG 1 cut(s) 200
BsiHKAI GWGCWC 2 cut(s) 576, 1017
BsiHKCI CYCGRG 2 cut(s) 897, 1008
BsiSI CCGG 3 cut(s) 209, 441, 598
BslFI GGGAC 1 cut(s) 299
BslI CCNNNNNNNGG 8 cut(s) 170, 250, 251, 347, 475, 476, 568, 770
BsmAI GTCTC 1 cut(s) 919
BsmFI GGGAC 1 cut(s) 299
BsmI GAATGC 1 cut(s) 1063
BsnI GGCC 2 cut(s) 199, 846
BsoBI CYCGRG 2 cut(s) 897, 1008
Bsp1286I GDGCHC 2 cut(s) 576, 1017
Bsp143I GATC 6 cut(s) 317, 355, 484, 623, 665, 778
BspACI CCGC 6 cut(s) 69, 351, 562, 880, 998, 1036
BspANI GGCC 2 cut(s) 199, 846
BspCNI CTCAG 1 cut(s) 1029
BspFNI CGCG 3 cut(s) 61, 880, 1038
BspLI GGNNCC 3 cut(s) 73, 438, 690
BspMI ACCTGC 2 cut(s) 286, 830
BspOI GCTAGC 1 cut(s) 998
BspPI GGATC 3 cut(s) 618, 673, 786
BspQI GCTCTTC 1 cut(s) 612
BspT107I GGYRCC 1 cut(s) 71
BsrDI GCAATG 2 cut(s) 161, 931
BsrFI RCCGGY 1 cut(s) 597
BsrI ACTGG 1 cut(s) 748
BssAI RCCGGY 1 cut(s) 597
BssECI CCNNGG 2 cut(s) 716, 968
BssMI GATC 6 cut(s) 317, 355, 484, 623, 665, 778
Bst2UI CCWGG 1 cut(s) 969
Bst4CI ACNGT 2 cut(s) 378, 735
Bst6I CTCTTC 1 cut(s) 612
BstAPI GCANNNNNTGC 1 cut(s) 165
BstBAI YACGTR 1 cut(s) 9
BstC8I GCNNGC 4 cut(s) 262, 531, 603, 996
BstDEI CTNAG 2 cut(s) 414, 1016
BstF5I GGATG 6 cut(s) 240, 406, 412, 429, 666, 1006
BstFNI CGCG 3 cut(s) 61, 880, 1038
BstHHI GCGC 3 cut(s) 61, 112, 535
BstKTI GATC 6 cut(s) 320, 358, 487, 626, 668, 781
BstMAI GTCTC 1 cut(s) 919
BstMBI GATC 6 cut(s) 317, 355, 484, 623, 665, 778
BstMCI CGRYCG 1 cut(s) 200
BstMWI GCNNNNNNNGC 3 cut(s) 165, 535, 836
BstNI CCWGG 1 cut(s) 969
BstNSI RCATGY 1 cut(s) 21
BstSCI CCNGG 3 cut(s) 207, 439, 967
BstUI CGCG 3 cut(s) 61, 880, 1038
BstV1I GCAGC 4 cut(s) 68, 78, 547, 1003
BstV2I GAAGAC 1 cut(s) 1070
BstX2I RGATCY 2 cut(s) 623, 665
BstYI RGATCY 2 cut(s) 623, 665
BstZI CGGCCG 1 cut(s) 197
Bsu36I CCTNAGG 1 cut(s) 414
BsuRI GGCC 2 cut(s) 199, 846
BtgZI GCGATG 2 cut(s) 553, 861
BtsCI GGATG 6 cut(s) 240, 406, 412, 429, 666, 1006
BtsI GCAGTG 1 cut(s) 799
BtsIMutI CAGTG 3 cut(s) 128, 702, 799
BveI ACCTGC 2 cut(s) 286, 830
Cac8I GCNNGC 4 cut(s) 262, 531, 603, 996
CfoI GCGC 3 cut(s) 61, 112, 535
Cfr10I RCCGGY 1 cut(s) 597
Csp6I GTAC 4 cut(s) 21, 148, 241, 446
CviAII CATG 5 cut(s) 18, 165, 568, 782, 1068
CviQI GTAC 4 cut(s) 21, 148, 241, 446
DdeI CTNAG 2 cut(s) 414, 1016
DpnI GATC 6 cut(s) 319, 357, 486, 625, 667, 780
DpnII GATC 6 cut(s) 317, 355, 484, 623, 665, 778
EaeI YGGCCR 2 cut(s) 197, 844
EagI CGGCCG 1 cut(s) 197
Eam1104I CTCTTC 1 cut(s) 612
EarI CTCTTC 1 cut(s) 612
Ecl136II GAGCTC 2 cut(s) 574, 1015
EclXI CGGCCG 1 cut(s) 197
Eco24I GRGCYC 2 cut(s) 576, 1017
Eco52I CGGCCG 1 cut(s) 197
Eco53kI GAGCTC 2 cut(s) 574, 1015
Eco57I CTGAAG 2 cut(s) 249, 894
Eco81I CCTNAGG 1 cut(s) 414
Eco88I CYCGRG 2 cut(s) 897, 1008
EcoICRI GAGCTC 2 cut(s) 574, 1015
EcoRI GAATTC 1 cut(s) 495
EcoRII CCWGG 1 cut(s) 967
EcoT22I ATGCAT 1 cut(s) 877
EcoT38I GRGCYC 2 cut(s) 576, 1017
FaeI CATG 5 cut(s) 21, 168, 571, 785, 1071
FaqI GGGAC 1 cut(s) 299
FatI CATG 5 cut(s) 17, 164, 567, 781, 1067
FauNDI CATATG 1 cut(s) 343
Fnu4HI GCNGC 6 cut(s) 57, 67, 70, 536, 992, 1036
FokI GGATG 6 cut(s) 247, 413, 419, 436, 673, 1013
FriOI GRGCYC 2 cut(s) 576, 1017
Fsp4HI GCNGC 6 cut(s) 57, 67, 70, 536, 992, 1036
FspBI CTAG 4 cut(s) 336, 395, 930, 995
GlaI GCGC 3 cut(s) 60, 111, 534
GluI GCNGC 6 cut(s) 57, 67, 70, 536, 992, 1036
HaeIII GGCC 2 cut(s) 199, 846
HapII CCGG 3 cut(s) 209, 441, 598
HhaI GCGC 3 cut(s) 61, 112, 535
Hin1II CATG 5 cut(s) 21, 168, 571, 785, 1071
Hin6I GCGC 3 cut(s) 59, 110, 533
HinP1I GCGC 3 cut(s) 59, 110, 533
HindIII AAGCTT 1 cut(s) 906
HinfI GANTC 5 cut(s) 323, 591, 644, 941, 1029
HpaII CCGG 3 cut(s) 209, 441, 598
HphI GGTGA 3 cut(s) 283, 365, 560
Hpy166II GTNNAC 3 cut(s) 6, 448, 700
Hpy188I TCNGA 6 cut(s) 229, 322, 628, 769, 946, 1028
Hpy188III TCNNGA 6 cut(s) 327, 586, 738, 897, 899, 1010
Hpy8I GTNNAC 3 cut(s) 6, 448, 700
HpyAV CCTTC 2 cut(s) 44, 224
HpyCH4III ACNGT 2 cut(s) 378, 735
HpyCH4IV ACGT 1 cut(s) 8
HpyCH4V TGCA 7 cut(s) 12, 159, 168, 260, 314, 362, 875
HpyF10VI GCNNNNNNNGC 3 cut(s) 165, 535, 836
HpyF3I CTNAG 2 cut(s) 414, 1016
HpySE526I ACGT 1 cut(s) 8
Hsp92II CATG 5 cut(s) 21, 168, 571, 785, 1071
HspAI GCGC 3 cut(s) 59, 110, 533
Kzo9I GATC 6 cut(s) 317, 355, 484, 623, 665, 778
LguI GCTCTTC 1 cut(s) 612
LmnI GCTCC 5 cut(s) 53, 571, 694, 836, 1012
Lsp1109I GCAGC 4 cut(s) 68, 78, 547, 1003
LweI GCATC 6 cut(s) 225, 371, 573, 862, 869, 884
MaeI CTAG 4 cut(s) 336, 395, 930, 995
MaeII ACGT 1 cut(s) 8
MaeIII GTNAC 1 cut(s) 800
MalI GATC 6 cut(s) 319, 357, 486, 625, 667, 780
MboI GATC 6 cut(s) 317, 355, 484, 623, 665, 778
MboII GAAGA 7 cut(s) 59, 599, 639, 641, 971, 1075, 1088
MflI RGATCY 2 cut(s) 623, 665
MhlI GDGCHC 2 cut(s) 576, 1017
MlsI TGGCCA 1 cut(s) 846
MluCI AATT 5 cut(s) 134, 181, 495, 553, 918
MluNI TGGCCA 1 cut(s) 846
MlyI GAGTC 2 cut(s) 317, 950
MmeI TCCRAC 1 cut(s) 924
Mox20I TGGCCA 1 cut(s) 846
Mph1103I ATGCAT 1 cut(s) 877
MscI TGGCCA 1 cut(s) 846
MseI TTAA 2 cut(s) 117, 1111
MslI CAYNNNNRTG 1 cut(s) 786
Msp20I TGGCCA 1 cut(s) 846
MspA1I CMGCKG 1 cut(s) 69
MspI CCGG 3 cut(s) 209, 441, 598
MspR9I CCNGG 3 cut(s) 209, 441, 969
Mva1269I GAATGC 1 cut(s) 1063
MvaI CCWGG 1 cut(s) 969
MvnI CGCG 3 cut(s) 61, 880, 1038
MwoI GCNNNNNNNGC 3 cut(s) 165, 535, 836
NciI CCSGG 2 cut(s) 209, 441
NdeI CATATG 1 cut(s) 343
NdeII GATC 6 cut(s) 317, 355, 484, 623, 665, 778
NheI GCTAGC 1 cut(s) 994
NlaIII CATG 5 cut(s) 21, 168, 571, 785, 1071
NlaIV GGNNCC 3 cut(s) 73, 438, 690
NmeAIII GCCGAG 2 cut(s) 225, 533
NmuCI GTSAC 1 cut(s) 800
NsiI ATGCAT 1 cut(s) 877
NspI RCATGY 1 cut(s) 21
PaeR7I CTCGAG 1 cut(s) 897
PaqCI CACCTGC 2 cut(s) 286, 830
PciSI GCTCTTC 1 cut(s) 612
PcsI WCGNNNNNNNCGW 1 cut(s) 505
PctI GAATGC 1 cut(s) 1063
PfeI GAWTC 3 cut(s) 591, 644, 1029
PflMI CCANNNNNTGG 1 cut(s) 347
PkrI GCNGC 6 cut(s) 58, 68, 71, 537, 993, 1037
PleI GAGTC 2 cut(s) 317, 949
PpsI GAGTC 2 cut(s) 317, 949
Ppu21I YACGTR 1 cut(s) 9
PsiI TTATAA 1 cut(s) 186
Psp124BI GAGCTC 2 cut(s) 576, 1017
Psp6I CCWGG 1 cut(s) 967
PspGI CCWGG 1 cut(s) 967
PspN4I GGNNCC 3 cut(s) 73, 438, 690
PsrI GAACNNNNNNTAC 2 cut(s) 429, 461
PsuI RGATCY 2 cut(s) 623, 665
RsaI GTAC 4 cut(s) 22, 149, 242, 447
RsaNI GTAC 4 cut(s) 21, 148, 241, 446
RseI CAYNNNNRTG 1 cut(s) 786
SacI GAGCTC 2 cut(s) 576, 1017
SapI GCTCTTC 1 cut(s) 612
SaqAI TTAA 2 cut(s) 117, 1111
SatI GCNGC 6 cut(s) 57, 67, 70, 536, 992, 1036
Sau3AI GATC 6 cut(s) 317, 355, 484, 623, 665, 778
SchI GAGTC 2 cut(s) 317, 950
ScrFI CCNGG 3 cut(s) 209, 441, 969
SduI GDGCHC 2 cut(s) 576, 1017
SfaNI GCATC 6 cut(s) 225, 371, 573, 862, 869, 884
Sfr274I CTCGAG 1 cut(s) 897
SlaI CTCGAG 1 cut(s) 897
SmiMI CAYNNNNRTG 1 cut(s) 786
SmlI CTYRAG 2 cut(s) 655, 897
SmoI CTYRAG 2 cut(s) 655, 897
Sse9I AATT 5 cut(s) 134, 181, 495, 553, 918
SsiI CCGC 6 cut(s) 69, 351, 562, 880, 998, 1036
SspMI CTAG 4 cut(s) 336, 395, 930, 995
SstI GAGCTC 2 cut(s) 576, 1017
StyD4I CCNGG 3 cut(s) 207, 439, 967
TaaI ACNGT 2 cut(s) 378, 735
TaiI ACGT 1 cut(s) 11
TaqI TCGA 2 cut(s) 328, 898
TasI AATT 5 cut(s) 134, 181, 495, 553, 918
TauI GCSGC 2 cut(s) 72, 1038
TfiI GAWTC 3 cut(s) 591, 644, 1029
Tru1I TTAA 2 cut(s) 117, 1111
Tru9I TTAA 2 cut(s) 117, 1111
TscAI CASTG 3 cut(s) 135, 702, 799
TseFI GTSAC 1 cut(s) 800
TseI GCWGC 4 cut(s) 56, 66, 535, 991
Tsp45I GTSAC 1 cut(s) 800
TspDTI ATGAA 2 cut(s) 918, 1070
TspGWI ACGGA 1 cut(s) 47
TspRI CASTG 3 cut(s) 135, 702, 799
Van91I CCANNNNNTGG 1 cut(s) 347
XapI RAATTY 2 cut(s) 134, 495
XceI RCATGY 1 cut(s) 21
XhoI CTCGAG 1 cut(s) 897
XspI CTAG 4 cut(s) 336, 395, 930, 995
Zsp2I ATGCAT 1 cut(s) 877
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.