Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005297

Physical Location & Seq

Genomic Coordinates Reverse (-)

9024536 .. 9025764

Gene Structure 1229 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G21030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGTGAAGTTGACTTGCATAATTCTGGAAAATAGTCATATCACATTCGCTTCTCTTCCCACTGGAGGAAATGATCTCAAACGCATCCGCTTCAGCCGAGAGATGTACAATAAGTGGCAAGCTCAACGGCGGTGGGGTGAGAACTATGACAAGATCGTTGAGCTTTACAATGTACAGAGATTTAACCGCCAAGCTCTCCAAACGCCTGCAAGATCCGACGATCAGTCACAGAGAGATTCAACATACTCAAAGATGGATTCAGCAAGAGAAAGCAAAGACTGGACTCCAAGACACAACTTCAGACCTCCAGGATCTGTCCCGCATCACTTTTATGGCGGCTCTAGCAACTATGGACCAGGAAGTTATCATGGAGGACCACCGATGGATGCAGCAAGAACCACAACTTCTTCCAGAGATGATCCACCTTCCATGAGCAATGCTAGTGAAATGCAAGCTGAGTGGATTGAAGAGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009735 GO:0009736 GO:0009737 GO:0009755 GO:0009791 GO:0009987 GO:0010033 GO:0016020 GO:0022622 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071368 GO:0071495 GO:0071944 GO:0090696 GO:0097305 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRX BRX_N

Protein Analysis

158

Amino Acids

18.16

Weight (kDa)

6.97

Isoelectric Point (pI)

65.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BRX	PF08381	13 - 56	3.6e-14	Transcription factor regulating root and shoot growth via Pin3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005297)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31880 AT1G31880 AT2G21030 AT2G35600 AT2G35600 AT2G35600
fragaria_vesca	FvH4_5g23860 FvH4_5g23860 FvH4_5g23860 FvH4_5g23860 FvH4_5g23860
malus_domestica	MD06G1014400.v1.1
prunus_persica	Prupe.5G021900_v2.0.a1 Prupe.5G021900_v2.0.a1 Prupe.5G021900_v2.0.a1 Prupe.5G021900_v2.0.a1
pyrus_communis	pycom06g01150
rosa_chinensis	RchiOBHm_Chr7g0213251
rosa_laevigata	RLG00000002818
rosa_multiflora	Rmu_ssc0000084.1_g000024
rosa_roxburghii	Rroxscaffold_3G00246140
rosa_rugosa	Rorug07G0140700 Rorug07G0140700 Rorug07G0140800
rosa_samantha	Rh7AG272300 Rh7BG268000 Rh7CG291700 Rh7DG280200
rosa_wichuraiana	Rw7G023630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	88, 130, 187, 320, 336
AclWI	GGATC	3 cut(s)	207, 319, 413
AcuI	CTGAAG	2 cut(s)	76, 283
AfaI	GTAC	2 cut(s)	107, 174
AfiI	CCNNNNNNNGG	1 cut(s)	65
AgsI	TTSAA	2 cut(s)	240, 467
AhdI	GACNNNNNGTC	1 cut(s)	223
AjnI	CCWGG	2 cut(s)	307, 355
AluBI	AGCT	4 cut(s)	122, 163, 194, 455
AluI	AGCT	4 cut(s)	122, 163, 194, 455
AlwI	GGATC	3 cut(s)	207, 319, 413
AlwNI	CAGNNNCTG	1 cut(s)	314
ApeKI	GCWGC	1 cut(s)	389
AspS9I	GGNCC	2 cut(s)	353, 374
AsuHPI	GGTGA	2 cut(s)	16, 149
AvaII	GGWCC	2 cut(s)	353, 374
BbvI	GCAGC	1 cut(s)	401
BccI	CCATC	2 cut(s)	247, 376
BceAI	ACGGC	1 cut(s)	143
BciT130I	CCWGG	2 cut(s)	309, 357
BfaI	CTAG	3 cut(s)	342, 441, 475
BisI	GCNGC	2 cut(s)	337, 390
BlsI	GCNGC	2 cut(s)	338, 391
Bme1390I	CCNGG	2 cut(s)	309, 357
Bme18I	GGWCC	2 cut(s)	353, 374
BmeRI	GACNNNNNGTC	1 cut(s)	223
BmgT120I	GGNCC	2 cut(s)	353, 374
BmrFI	CCNGG	2 cut(s)	309, 357
BmsI	GCATC	3 cut(s)	93, 331, 376
BpmI	CTGGAG	2 cut(s)	84, 291
Bsc4I	CCNNNNNNNGG	1 cut(s)	65
Bse1I	ACTGG	2 cut(s)	67, 284
Bse3DI	GCAATG	1 cut(s)	442
BseBI	CCWGG	2 cut(s)	309, 357
BseGI	GGATG	2 cut(s)	84, 391
BseLI	CCNNNNNNNGG	1 cut(s)	65
BseMI	GCAATG	1 cut(s)	442
BseMII	CTCAG	1 cut(s)	447
BseNI	ACTGG	2 cut(s)	67, 284
BseXI	GCAGC	1 cut(s)	401
BslFI	GGGAC	1 cut(s)	302
BslI	CCNNNNNNNGG	1 cut(s)	65
BsmFI	GGGAC	1 cut(s)	302
Bsp1407I	TGTACA	2 cut(s)	105, 172
Bsp143I	GATC	6 cut(s)	73, 153, 212, 220, 311, 418
BspACI	CCGC	5 cut(s)	88, 130, 187, 320, 336
BspCNI	CTCAG	1 cut(s)	448
BspPI	GGATC	3 cut(s)	207, 319, 413
BsrDI	GCAATG	1 cut(s)	442
BsrGI	TGTACA	2 cut(s)	105, 172
BsrI	ACTGG	2 cut(s)	67, 284
BssMI	GATC	6 cut(s)	73, 153, 212, 220, 311, 418
Bst2UI	CCWGG	2 cut(s)	309, 357
Bst6I	CTCTTC	2 cut(s)	60, 462
BstAUI	TGTACA	2 cut(s)	105, 172
BstC8I	GCNNGC	3 cut(s)	120, 207, 453
BstDEI	CTNAG	1 cut(s)	456
BstF5I	GGATG	2 cut(s)	84, 391
BstKTI	GATC	6 cut(s)	76, 156, 215, 223, 314, 421
BstMBI	GATC	6 cut(s)	73, 153, 212, 220, 311, 418
BstMWI	GCNNNNNNNGC	1 cut(s)	342
BstNI	CCWGG	2 cut(s)	309, 357
BstSCI	CCNGG	2 cut(s)	307, 355
BstV1I	GCAGC	1 cut(s)	401
BstX2I	RGATCY	2 cut(s)	212, 311
BstYI	RGATCY	2 cut(s)	212, 311
BtsCI	GGATG	2 cut(s)	84, 391
BtsIMutI	CAGTG	1 cut(s)	60
Cac8I	GCNNGC	3 cut(s)	120, 207, 453
CaiI	CAGNNNCTG	1 cut(s)	314
Cfr13I	GGNCC	2 cut(s)	353, 374
Csp6I	GTAC	2 cut(s)	106, 173
CspCI	CAANNNNNGTGG	4 cut(s)	113, 148, 440, 475
CviAII	CATG	2 cut(s)	368, 430
CviJI	RGCY	6 cut(s)	96, 122, 163, 194, 339, 455
CviKI_1	RGCY	6 cut(s)	96, 122, 163, 194, 339, 455
CviQI	GTAC	2 cut(s)	106, 173
DdeI	CTNAG	1 cut(s)	456
DpnI	GATC	6 cut(s)	75, 155, 214, 222, 313, 420
DpnII	GATC	6 cut(s)	73, 153, 212, 220, 311, 418
DriI	GACNNNNNGTC	1 cut(s)	223
Eam1104I	CTCTTC	2 cut(s)	60, 462
Eam1105I	GACNNNNNGTC	1 cut(s)	223
EarI	CTCTTC	2 cut(s)	60, 462
Eco47I	GGWCC	2 cut(s)	353, 374
Eco57I	CTGAAG	2 cut(s)	76, 283
EcoRII	CCWGG	2 cut(s)	307, 355
FaeI	CATG	2 cut(s)	371, 433
FaiI	YATR	8 cut(s)	20, 39, 147, 244, 333, 351, 369, 431
FaqI	GGGAC	1 cut(s)	302
FatI	CATG	2 cut(s)	367, 429
FauI	CCCGC	1 cut(s)	327
Fnu4HI	GCNGC	2 cut(s)	337, 390
FokI	GGATG	2 cut(s)	71, 398
Fsp4HI	GCNGC	2 cut(s)	337, 390
FspBI	CTAG	3 cut(s)	342, 441, 475
GluI	GCNGC	2 cut(s)	337, 390
GsuI	CTGGAG	2 cut(s)	84, 291
Hin1II	CATG	2 cut(s)	371, 433
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HinfI	GANTC	3 cut(s)	236, 257, 283
HphI	GGTGA	2 cut(s)	16, 149
Hpy166II	GTNNAC	1 cut(s)	12
Hpy188I	TCNGA	2 cut(s)	217, 302
Hpy188III	TCNNGA	2 cut(s)	26, 411
Hpy8I	GTNNAC	1 cut(s)	12
Hpy99I	CGWCG	1 cut(s)	221
HpyAV	CCTTC	1 cut(s)	435
HpyCH4V	TGCA	4 cut(s)	18, 209, 389, 451
HpyF10VI	GCNNNNNNNGC	1 cut(s)	342
HpyF3I	CTNAG	1 cut(s)	456
Hsp92II	CATG	2 cut(s)	371, 433
Kzo9I	GATC	6 cut(s)	73, 153, 212, 220, 311, 418
LpnPI	CCDG	9 cut(s)	11, 48, 219, 265, 294, 321, 342, 369, 424
Lsp1109I	GCAGC	1 cut(s)	401
LweI	GCATC	3 cut(s)	93, 331, 376
MaeI	CTAG	3 cut(s)	342, 441, 475
MaeIII	GTNAC	1 cut(s)	225
MalI	GATC	6 cut(s)	75, 155, 214, 222, 313, 420
MboI	GATC	6 cut(s)	73, 153, 212, 220, 311, 418
MboII	GAAGA	2 cut(s)	47, 399
MflI	RGATCY	2 cut(s)	212, 311
MluCI	AATT	1 cut(s)	21
MlyI	GAGTC	1 cut(s)	277
MmeI	TCCRAC	1 cut(s)	240
MnlI	CCTC	4 cut(s)	59, 315, 365, 463
MseI	TTAA	1 cut(s)	183
MslI	CAYNNNNRTG	1 cut(s)	330
MspR9I	CCNGG	2 cut(s)	309, 357
MvaI	CCWGG	2 cut(s)	309, 357
MwoI	GCNNNNNNNGC	1 cut(s)	342
NdeII	GATC	6 cut(s)	73, 153, 212, 220, 311, 418
NlaIII	CATG	2 cut(s)	371, 433
NmeAIII	GCCGAG	1 cut(s)	122
NmuCI	GTSAC	1 cut(s)	225
PfeI	GAWTC	2 cut(s)	236, 257
PfoI	TCCNGGA	1 cut(s)	307
PkrI	GCNGC	2 cut(s)	338, 391
PleI	GAGTC	1 cut(s)	277
PpsI	GAGTC	1 cut(s)	277
Psp6I	CCWGG	2 cut(s)	307, 355
PspGI	CCWGG	2 cut(s)	307, 355
PspPI	GGNCC	2 cut(s)	353, 374
PstNI	CAGNNNCTG	1 cut(s)	314
PsuI	RGATCY	2 cut(s)	212, 311
RsaI	GTAC	2 cut(s)	107, 174
RsaNI	GTAC	2 cut(s)	106, 173
RseI	CAYNNNNRTG	1 cut(s)	330
SaqAI	TTAA	1 cut(s)	183
SatI	GCNGC	2 cut(s)	337, 390
Sau3AI	GATC	6 cut(s)	73, 153, 212, 220, 311, 418
Sau96I	GGNCC	2 cut(s)	353, 374
SchI	GAGTC	1 cut(s)	277
ScrFI	CCNGG	2 cut(s)	309, 357
SetI	ASST	6 cut(s)	124, 165, 196, 307, 427, 457
SfaNI	GCATC	3 cut(s)	93, 331, 376
SinI	GGWCC	2 cut(s)	353, 374
SmiMI	CAYNNNNRTG	1 cut(s)	330
Sse9I	AATT	1 cut(s)	21
SsiI	CCGC	5 cut(s)	88, 130, 187, 320, 336
SspMI	CTAG	3 cut(s)	342, 441, 475
StyD4I	CCNGG	2 cut(s)	307, 355
TasI	AATT	1 cut(s)	21
TatI	WGTACW	2 cut(s)	105, 172
TauI	GCSGC	1 cut(s)	339
TfiI	GAWTC	2 cut(s)	236, 257
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TscAI	CASTG	1 cut(s)	67
TseFI	GTSAC	1 cut(s)	225
TseI	GCWGC	1 cut(s)	389
Tsp45I	GTSAC	1 cut(s)	225
TspRI	CASTG	1 cut(s)	67
VpaK11BI	GGWCC	2 cut(s)	353, 374
XspI	CTAG	3 cut(s)	342, 441, 475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.