Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0005297

Physical Location & Seq

Genomic Coordinates Reverse (-)

29766778 .. 29772912

Gene Structure 6135 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG291700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGCATTGAAATTCTCCGGTGCGTACAAGCAATGCAAACCATGCACAGGATCAAGCAGTAGCTTCAAGAAAGGGCAAAGGAGACCTTACCCTGATTTTGATACTGCTTCTGAAGGGGTTCCATACCCTTATGCTGCAAGCTCAAGTTCTACACCTGCTTGGGACTTCACCTCTAATCATCAACTTGGTGCAAGATCAGACTCGAGATTCACTCGACCATATGGCGGTGGAGGTGATCCGACTCGAGATTCAACGTGTGAGGTTGTGTTAGAGGATGAGGATGAGCCCAAGGAGTGGATGGCACAGGTCGAACCAGGAGTGCACATCACTTTTGTGTCGCTTCCTAATGGGGGAAATGATCTTAAACGAATTCGCTTCAGCCGAGAGATGTTTAACAAATGGCAAGCTCAGCGATGGTGGGGTGAGAATTATGACCGCATAATGGAGCTCTACAATGTCCAGAGATTCAACCGGCAAGCTCTTCACACTCCACCAAGGTCTGAAGATGAGCCACCAAGAGAATCCTTTTACTCGAGGATGGACTCTGCTAGAGAAAGCCCTATGGTTCCAACAAACTGGACACCACGGCACCACTACAAACCCTCTGGAGCTGGAAGTGGAGGATACTTCCCATCTGATGGTCATCAGTATAATGCAGGTGGATCTATTGATGCATCACGAACGACAACCTCATCTAGAGATGAAGCTTCCGTCTCTATTAGCAATGCTAGTGAGGTGGAGTCCGAATGGGTTGAACAAGATGAGCCTGGGGTCTATATAACCATTCGACAGCTAGCCGATGGCACTAGGGAGCTCCGGCGTGTTAGGTTCAGTCGCGAAAGGTTTGGGGAGAGGAATGCGAAGACATGGTGGGAAGAAAACCGAGAGAGAATACAAGCTCAATACCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRX BRX_N

Protein Analysis

303

Amino Acids

34.67

Weight (kDa)

6.14

Isoelectric Point (pI)

53.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BRX	PF08381	97 - 151	2.5e-26	Transcription factor regulating root and shoot growth via Pin3
BRX	PF08381	247 - 302	1.6e-27	Transcription factor regulating root and shoot growth via Pin3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005297)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31880 AT1G31880 AT2G21030 AT2G35600 AT2G35600 AT2G35600
fragaria_vesca	FvH4_5g23860 FvH4_5g23860 FvH4_5g23860 FvH4_5g23860 FvH4_5g23860
malus_domestica	MD06G1014400.v1.1
prunus_persica	Prupe.5G021900_v2.0.a1 Prupe.5G021900_v2.0.a1 Prupe.5G021900_v2.0.a1 Prupe.5G021900_v2.0.a1
pyrus_communis	pycom06g01150
rosa_chinensis	RchiOBHm_Chr7g0213251
rosa_laevigata	RLG00000002818
rosa_multiflora	Rmu_ssc0000084.1_g000024
rosa_roxburghii	Rroxscaffold_3G00246140
rosa_rugosa	Rorug07G0140700 Rorug07G0140700 Rorug07G0140800
rosa_samantha	Rh7AG272300 Rh7BG268000 Rh7CG291700 Rh7DG280200
rosa_wichuraiana	Rw7G023630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	163, 647
Acc36I	ACCTGC	2 cut(s)	163, 647
AccB1I	GGYRCC	1 cut(s)	588
AccB7I	CCANNNNNTGG	2 cut(s)	294, 638
AccII	CGCG	1 cut(s)	837
AciI	CCGC	2 cut(s)	225, 436
AclWI	GGATC	3 cut(s)	58, 230, 670
AcsI	RAATTY	2 cut(s)	11, 369
AcuI	CTGAAG	3 cut(s)	132, 361, 522
AfaI	GTAC	1 cut(s)	26
AfiI	CCNNNNNNNGG	6 cut(s)	47, 224, 294, 350, 442, 638
AflIII	ACRYGT	1 cut(s)	254
AgsI	TTSAA	5 cut(s)	10, 67, 252, 469, 755
AjnI	CCWGG	2 cut(s)	313, 766
AleI	CACNNNNGTG	1 cut(s)	332
Alw21I	GWGCWC	3 cut(s)	324, 450, 816
Alw26I	GTCTC	2 cut(s)	76, 718
Alw44I	GTGCAC	1 cut(s)	320
AlwI	GGATC	3 cut(s)	58, 230, 670
Ama87I	CYCGRG	3 cut(s)	202, 243, 532
ApaLI	GTGCAC	1 cut(s)	320
ApeKI	GCWGC	1 cut(s)	134
ApoI	RAATTY	2 cut(s)	11, 369
Asp700I	GAANNNNTTC	1 cut(s)	117
AsuHPI	GGTGA	3 cut(s)	160, 245, 434
AsuNHI	GCTAGC	1 cut(s)	793
AvaI	CYCGRG	3 cut(s)	202, 243, 532
BaeGI	GKGCMC	1 cut(s)	324
BanI	GGYRCC	1 cut(s)	588
BanII	GRGCYC	3 cut(s)	288, 450, 816
BbsI	GAAGAC	1 cut(s)	869
Bbv12I	GWGCWC	3 cut(s)	324, 450, 816
BbvI	GCAGC	1 cut(s)	121
BccI	CCATC	6 cut(s)	292, 408, 532, 632, 640, 794
BceAI	ACGGC	1 cut(s)	602
BciT130I	CCWGG	2 cut(s)	315, 768
BciVI	GTATCC	1 cut(s)	617
BcoDI	GTCTC	2 cut(s)	76, 718
BfaI	CTAG	5 cut(s)	549, 696, 729, 794, 807
BfuAI	ACCTGC	2 cut(s)	163, 647
BfuI	GTATCC	1 cut(s)	617
BisI	GCNGC	1 cut(s)	135
BlpI	GCTNAGC	1 cut(s)	408
BlsI	GCNGC	1 cut(s)	136
Bme1390I	CCNGG	2 cut(s)	315, 768
BmeT110I	CYCGRG	3 cut(s)	202, 243, 532
BmiI	GGNNCC	3 cut(s)	120, 567, 590
BmrFI	CCNGG	2 cut(s)	315, 768
BmsI	GCATC	2 cut(s)	661, 683
BmtI	GCTAGC	1 cut(s)	797
BpiI	GAAGAC	1 cut(s)	869
BplI	GAGNNNNNCTC	2 cut(s)	196, 228
BpmI	CTGGAG	1 cut(s)	627
Bpu1102I	GCTNAGC	1 cut(s)	408
BpuEI	CTTGAG	1 cut(s)	127
BsaBI	GATNNNNATC	1 cut(s)	642
BsaI	GGTCTC	1 cut(s)	76
BsaJI	CCNNGG	4 cut(s)	288, 494, 584, 767
BsaWI	WCCGGW	1 cut(s)	17
Bsc4I	CCNNNNNNNGG	6 cut(s)	47, 224, 294, 350, 442, 638
Bse118I	RCCGGY	1 cut(s)	471
Bse1I	ACTGG	1 cut(s)	581
Bse3DI	GCAATG	2 cut(s)	38, 730
Bse8I	GATNNNNATC	1 cut(s)	642
BseBI	CCWGG	2 cut(s)	315, 768
BseDI	CCNNGG	4 cut(s)	288, 494, 584, 767
BseGI	GGATG	4 cut(s)	280, 286, 303, 543
BseJI	GATNNNNATC	1 cut(s)	642
BseLI	CCNNNNNNNGG	6 cut(s)	47, 224, 294, 350, 442, 638
BseMI	GCAATG	2 cut(s)	38, 730
BseMII	CTCAG	1 cut(s)	422
BseNI	ACTGG	1 cut(s)	581
BseSI	GKGCMC	1 cut(s)	324
BseXI	GCAGC	1 cut(s)	121
Bsh1236I	CGCG	1 cut(s)	837
BshNI	GGYRCC	1 cut(s)	588
BsiHKAI	GWGCWC	3 cut(s)	324, 450, 816
BsiHKCI	CYCGRG	3 cut(s)	202, 243, 532
BsiSI	CCGG	3 cut(s)	18, 472, 817
BslFI	GGGAC	1 cut(s)	176
BslI	CCNNNNNNNGG	6 cut(s)	47, 224, 294, 350, 442, 638
BsmAI	GTCTC	2 cut(s)	76, 718
BsmBI	CGTCTC	1 cut(s)	718
BsmFI	GGGAC	1 cut(s)	176
BsmI	GAATGC	1 cut(s)	862
Bso31I	GGTCTC	1 cut(s)	76
BsoBI	CYCGRG	3 cut(s)	202, 243, 532
Bsp1286I	GDGCHC	4 cut(s)	288, 324, 450, 816
Bsp143I	GATC	5 cut(s)	50, 194, 235, 358, 662
Bsp1720I	GCTNAGC	1 cut(s)	408
Bsp68I	TCGCGA	1 cut(s)	837
BspACI	CCGC	2 cut(s)	225, 436
BspCNI	CTCAG	1 cut(s)	421
BspFNI	CGCG	1 cut(s)	837
BspLI	GGNNCC	3 cut(s)	120, 567, 590
BspMI	ACCTGC	2 cut(s)	163, 647
BspOI	GCTAGC	1 cut(s)	797
BspPI	GGATC	3 cut(s)	58, 230, 670
BspQI	GCTCTTC	1 cut(s)	486
BspT107I	GGYRCC	1 cut(s)	588
BspTNI	GGTCTC	1 cut(s)	76
BsrDI	GCAATG	2 cut(s)	38, 730
BsrFI	RCCGGY	1 cut(s)	471
BsrI	ACTGG	1 cut(s)	581
BssAI	RCCGGY	1 cut(s)	471
BssECI	CCNNGG	4 cut(s)	288, 494, 584, 767
BssMI	GATC	5 cut(s)	50, 194, 235, 358, 662
BssT1I	CCWWGG	2 cut(s)	288, 494
Bst2UI	CCWGG	2 cut(s)	315, 768
Bst6I	CTCTTC	1 cut(s)	486
BstAPI	GCANNNNNTGC	1 cut(s)	42
BstC8I	GCNNGC	4 cut(s)	139, 405, 477, 795
BstDEI	CTNAG	1 cut(s)	408
BstDSI	CCRYGG	1 cut(s)	584
BstF5I	GGATG	4 cut(s)	280, 286, 303, 543
BstFNI	CGCG	1 cut(s)	837
BstKTI	GATC	5 cut(s)	53, 197, 238, 361, 665
BstMAI	GTCTC	2 cut(s)	76, 718
BstMBI	GATC	5 cut(s)	50, 194, 235, 358, 662
BstMWI	GCNNNNNNNGC	2 cut(s)	42, 409
BstNI	CCWGG	2 cut(s)	315, 768
BstSCI	CCNGG	2 cut(s)	313, 766
BstSLI	GKGCMC	1 cut(s)	324
BstUI	CGCG	1 cut(s)	837
BstV1I	GCAGC	1 cut(s)	121
BstV2I	GAAGAC	1 cut(s)	869
BstX2I	RGATCY	1 cut(s)	662
BstXI	CCANNNNNNTGG	1 cut(s)	576
BstYI	RGATCY	1 cut(s)	662
BsuI	GTATCC	1 cut(s)	617
BtgI	CCRYGG	1 cut(s)	584
BtgZI	GCGATG	1 cut(s)	427
BtsCI	GGATG	4 cut(s)	280, 286, 303, 543
BtuMI	TCGCGA	1 cut(s)	837
BveI	ACCTGC	2 cut(s)	163, 647
Cac8I	GCNNGC	4 cut(s)	139, 405, 477, 795
Cfr10I	RCCGGY	1 cut(s)	471
Csp6I	GTAC	1 cut(s)	25
CviAII	CATG	2 cut(s)	42, 867
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	1 cut(s)	408
DpnI	GATC	5 cut(s)	52, 196, 237, 360, 664
DpnII	GATC	5 cut(s)	50, 194, 235, 358, 662
Eam1104I	CTCTTC	1 cut(s)	486
EarI	CTCTTC	1 cut(s)	486
Ecl136II	GAGCTC	2 cut(s)	448, 814
Eco130I	CCWWGG	2 cut(s)	288, 494
Eco24I	GRGCYC	3 cut(s)	288, 450, 816
Eco31I	GGTCTC	1 cut(s)	76
Eco53kI	GAGCTC	2 cut(s)	448, 814
Eco57I	CTGAAG	3 cut(s)	132, 361, 522
Eco88I	CYCGRG	3 cut(s)	202, 243, 532
EcoICRI	GAGCTC	2 cut(s)	448, 814
EcoRI	GAATTC	1 cut(s)	369
EcoRII	CCWGG	2 cut(s)	313, 766
EcoT14I	CCWWGG	2 cut(s)	288, 494
EcoT22I	ATGCAT	1 cut(s)	676
EcoT38I	GRGCYC	3 cut(s)	288, 450, 816
ErhI	CCWWGG	2 cut(s)	288, 494
Esp3I	CGTCTC	1 cut(s)	718
FaeI	CATG	2 cut(s)	45, 870
FalI	AAGNNNNNCTT	2 cut(s)	70, 102
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	2 cut(s)	41, 866
FauNDI	CATATG	1 cut(s)	220
Fnu4HI	GCNGC	1 cut(s)	135
FokI	GGATG	4 cut(s)	287, 293, 310, 550
FriOI	GRGCYC	3 cut(s)	288, 450, 816
Fsp4HI	GCNGC	1 cut(s)	135
FspBI	CTAG	5 cut(s)	549, 696, 729, 794, 807
GluI	GCNGC	1 cut(s)	135
GsuI	CTGGAG	1 cut(s)	627
HapII	CCGG	3 cut(s)	18, 472, 817
Hin1II	CATG	2 cut(s)	45, 870
HindIII	AAGCTT	1 cut(s)	705
HinfI	GANTC	8 cut(s)	200, 207, 241, 248, 465, 521, 542, 740
HpaII	CCGG	3 cut(s)	18, 472, 817
HphI	GGTGA	3 cut(s)	160, 245, 434
Hpy166II	GTNNAC	1 cut(s)	322
Hpy188I	TCNGA	6 cut(s)	112, 199, 240, 502, 637, 745
Hpy188III	TCNNGA	8 cut(s)	67, 204, 245, 460, 606, 678, 696, 836
Hpy8I	GTNNAC	1 cut(s)	322
HpyAV	CCTTC	1 cut(s)	107
HpyCH4IV	ACGT	1 cut(s)	254
HpyCH4V	TGCA	7 cut(s)	36, 45, 137, 191, 322, 656, 674
HpyF10VI	GCNNNNNNNGC	2 cut(s)	42, 409
HpyF3I	CTNAG	1 cut(s)	408
HpySE526I	ACGT	1 cut(s)	254
Hsp92II	CATG	2 cut(s)	45, 870
Kzo9I	GATC	5 cut(s)	50, 194, 235, 358, 662
LguI	GCTCTTC	1 cut(s)	486
LmnI	GCTCC	4 cut(s)	445, 608, 811, 819
Lsp1109I	GCAGC	1 cut(s)	121
LweI	GCATC	2 cut(s)	661, 683
MaeI	CTAG	5 cut(s)	549, 696, 729, 794, 807
MaeII	ACGT	1 cut(s)	254
MalI	GATC	5 cut(s)	52, 196, 237, 360, 664
MboI	GATC	5 cut(s)	50, 194, 235, 358, 662
MboII	GAAGA	4 cut(s)	473, 515, 874, 887
MflI	RGATCY	1 cut(s)	662
MhlI	GDGCHC	4 cut(s)	288, 324, 450, 816
MluCI	AATT	3 cut(s)	11, 369, 427
MlyI	GAGTC	4 cut(s)	194, 235, 536, 749
MmeI	TCCRAC	2 cut(s)	263, 593
Mph1103I	ATGCAT	1 cut(s)	676
MroXI	GAANNNNTTC	1 cut(s)	117
MseI	TTAA	3 cut(s)	363, 393, 910
MslI	CAYNNNNRTG	1 cut(s)	332
MspI	CCGG	3 cut(s)	18, 472, 817
MspR9I	CCNGG	2 cut(s)	315, 768
Mva1269I	GAATGC	1 cut(s)	862
MvaI	CCWGG	2 cut(s)	315, 768
MvnI	CGCG	1 cut(s)	837
MwoI	GCNNNNNNNGC	2 cut(s)	42, 409
NdeI	CATATG	1 cut(s)	220
NdeII	GATC	5 cut(s)	50, 194, 235, 358, 662
NheI	GCTAGC	1 cut(s)	793
NlaIII	CATG	2 cut(s)	45, 870
NlaIV	GGNNCC	3 cut(s)	120, 567, 590
NmeAIII	GCCGAG	1 cut(s)	407
NruI	TCGCGA	1 cut(s)	837
NsiI	ATGCAT	1 cut(s)	676
OliI	CACNNNNGTG	1 cut(s)	332
PaeR7I	CTCGAG	3 cut(s)	202, 243, 532
PaqCI	CACCTGC	2 cut(s)	163, 647
PciSI	GCTCTTC	1 cut(s)	486
PcsI	WCGNNNNNNNCGW	1 cut(s)	379
PctI	GAATGC	1 cut(s)	862
PdmI	GAANNNNTTC	1 cut(s)	117
PfeI	GAWTC	4 cut(s)	207, 248, 465, 521
PflMI	CCANNNNNTGG	2 cut(s)	294, 638
PkrI	GCNGC	1 cut(s)	136
PleI	GAGTC	4 cut(s)	194, 235, 536, 748
PpsI	GAGTC	4 cut(s)	194, 235, 536, 748
Psp124BI	GAGCTC	2 cut(s)	450, 816
Psp6I	CCWGG	2 cut(s)	313, 766
PspGI	CCWGG	2 cut(s)	313, 766
PspN4I	GGNNCC	3 cut(s)	120, 567, 590
PspXI	VCTCGAGB	1 cut(s)	532
PsuI	RGATCY	1 cut(s)	662
RruI	TCGCGA	1 cut(s)	837
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
RseI	CAYNNNNRTG	1 cut(s)	332
SacI	GAGCTC	2 cut(s)	450, 816
SapI	GCTCTTC	1 cut(s)	486
SaqAI	TTAA	3 cut(s)	363, 393, 910
SatI	GCNGC	1 cut(s)	135
Sau3AI	GATC	5 cut(s)	50, 194, 235, 358, 662
SchI	GAGTC	4 cut(s)	194, 235, 536, 749
ScrFI	CCNGG	2 cut(s)	315, 768
SduI	GDGCHC	4 cut(s)	288, 324, 450, 816
SfaNI	GCATC	2 cut(s)	661, 683
Sfr274I	CTCGAG	3 cut(s)	202, 243, 532
SlaI	CTCGAG	3 cut(s)	202, 243, 532
SmiMI	CAYNNNNRTG	1 cut(s)	332
SmlI	CTYRAG	4 cut(s)	142, 202, 243, 532
SmoI	CTYRAG	4 cut(s)	142, 202, 243, 532
Sse9I	AATT	3 cut(s)	11, 369, 427
SsiI	CCGC	2 cut(s)	225, 436
SspMI	CTAG	5 cut(s)	549, 696, 729, 794, 807
SstI	GAGCTC	2 cut(s)	450, 816
StyD4I	CCNGG	2 cut(s)	313, 766
StyI	CCWWGG	2 cut(s)	288, 494
TaiI	ACGT	1 cut(s)	257
TaqI	TCGA	6 cut(s)	203, 214, 244, 309, 533, 787
TasI	AATT	3 cut(s)	11, 369, 427
TfiI	GAWTC	4 cut(s)	207, 248, 465, 521
Tru1I	TTAA	3 cut(s)	363, 393, 910
Tru9I	TTAA	3 cut(s)	363, 393, 910
TseI	GCWGC	1 cut(s)	134
TspDTI	ATGAA	1 cut(s)	717
TspGWI	ACGGA	1 cut(s)	700
Van91I	CCANNNNNTGG	2 cut(s)	294, 638
VneI	GTGCAC	1 cut(s)	320
XapI	RAATTY	2 cut(s)	11, 369
XbaI	TCTAGA	1 cut(s)	695
XcmI	CCANNNNNNNNNTGG	1 cut(s)	295
XhoI	CTCGAG	3 cut(s)	202, 243, 532
XmnI	GAANNNNTTC	1 cut(s)	117
XspI	CTAG	5 cut(s)	549, 696, 729, 794, 807
Zsp2I	ATGCAT	1 cut(s)	676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.