AT2G35600

Protein Brevis radix-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0005297
Physical Location & Seq
Reverse (-)
14940774 .. 14945357
4584 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G35600.3

Sequence Viewer

Length: 996 bp
ATGTTTACTTGCATAAATTGCACTAAAATGGCAGACAGAGGTGAGGAGGATGAAGAAGATGAAGCGCGTGGGAGCACCACTCCCAACACTAAAGAAGCCGTTAAAAGCCTAACTACACAGATCAAAGATATGGCGTCGAAATTCTCAGGTTCTCATAAACAAAGCAAGCCAACTCCGGGCTCTTCGAGCAGCAACTTGAGGAAGTTTCCGGATTTTGACACTGCATCAGAGAGTGTTCCATACCCTTATCCTGGTGGAAGCACGAGCTCCACTCCTGCTTGGGACTTACCAAGATCCTCCTACCATCAATCTGGACGGCCAGACTCAAGATTCACATCAATGTATGGCGGTGAACGTGAATCCATCTCTGCTCAGTCGTGTGATGTGGTACTAGAGGATGACGAGCCAAAGGAGTGGATGGCTCAAGTAGAGCCTGGTGTTCATATCACATTTGTCTCACTTCCCAGTGGAGGAAATGATCTTAAACGGATACGTTTCAGCCGGGAGGTTTTCGACAAGTGGCAGGCTCAGAGGTGGTGGGGTGAGAACTATGACAGAATAGTTGAGCTTTACAATGTTCAAAGATTTAACCGACAAGCTCTTCAAACTCCTGGTAGATCCGAGGACCAGTCGCAGAGAGATTCAACTTACACAAGAATTGATTCAGCAAGAGAAAGCAGAGACTGGACACAAAGAGACAACAACTTCAGACCACCAGGAGGCAGTGTCCCTCATCATTTTTATGGACCTCCAATGGACGCAGCAAGAATCACCACCTCATCGAGGGACGAACCGCCTTCAATGAGTAATGCTAGTGAAATGCAAGGTGAGTGGGTTGAAGAGGACGAGCCTGGTGTCTACATTACCATCAGACAGTTACCAGATGGAACTAGAGAACTACGCCGCGTCAGGTTCAGTCGGGAACGGTTTGGGGAAGTGCATGCCAAGACATGGTGGGAGCAGAACAGGGACAGAATACAAACCCAATACCTCTAA

Protein Analysis

331

Amino Acids

38.0

Weight (kDa)

5.46

Isoelectric Point (pI)

58.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BRX_N PF13713 24 - 57 1.5e-12 Transcription factor BRX N-terminal domain
BRX PF08381 137 - 191 1.3e-25 Transcription factor regulating root and shoot growth via Pin3
BRX PF08381 277 - 330 2.5e-27 Transcription factor regulating root and shoot growth via Pin3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 951
AccI GTMKAC 1 cut(s) 858
AccII CGCG 2 cut(s) 67, 906
AccIII TCCGGA 1 cut(s) 208
AciI CCGC 3 cut(s) 348, 794, 904
AclWI GGATC 2 cut(s) 288, 612
AcoI YGGCCR 1 cut(s) 317
AcsI RAATTY 1 cut(s) 140
AcuI CTGAAG 1 cut(s) 691
AcyI GRCGYC 1 cut(s) 134
AfaI GTAC 1 cut(s) 390
AfiI CCNNNNNNNGG 6 cut(s) 176, 251, 470, 719, 783, 951
AgsI TTSAA 5 cut(s) 581, 605, 645, 801, 839
AjnI CCWGG 5 cut(s) 250, 433, 610, 715, 850
AluBI AGCT 3 cut(s) 267, 568, 599
AluI AGCT 3 cut(s) 267, 568, 599
Alw21I GWGCWC 2 cut(s) 77, 269
Alw26I GTCTC 3 cut(s) 460, 675, 690
AlwI GGATC 2 cut(s) 288, 612
AlwNI CAGNNNCTG 1 cut(s) 684
Aor13HI TCCGGA 1 cut(s) 208
AoxI GGCC 1 cut(s) 317
ApeKI GCWGC 2 cut(s) 189, 761
ApoI RAATTY 1 cut(s) 140
Asp700I GAANNNNTTC 1 cut(s) 661
AspLEI GCGC 1 cut(s) 67
AspS9I GGNCC 2 cut(s) 625, 746
AsuC2I CCSGG 2 cut(s) 177, 503
AsuHPI GGTGA 5 cut(s) 53, 362, 554, 763, 839
AvaII GGWCC 2 cut(s) 625, 746
BanII GRGCYC 2 cut(s) 182, 269
BauI CACGAG 1 cut(s) 262
Bbv12I GWGCWC 2 cut(s) 77, 269
BbvI GCAGC 2 cut(s) 201, 773
BccI CCATC 5 cut(s) 312, 371, 412, 875, 878
BceAI ACGGC 2 cut(s) 83, 332
BciT130I CCWGG 5 cut(s) 252, 435, 612, 717, 852
BciVI GTATCC 1 cut(s) 483
BcnI CCSGG 2 cut(s) 177, 503
BcoDI GTCTC 3 cut(s) 460, 675, 690
BfaI CTAG 3 cut(s) 392, 813, 891
BfuI GTATCC 1 cut(s) 483
BisI GCNGC 3 cut(s) 190, 762, 904
BlsI GCNGC 3 cut(s) 191, 763, 905
Bme1390I CCNGG 7 cut(s) 177, 252, 435, 503, 612, 717, 852
Bme18I GGWCC 2 cut(s) 625, 746
BmgT120I GGNCC 2 cut(s) 625, 746
BmrFI CCNGG 7 cut(s) 177, 252, 435, 503, 612, 717, 852
BmrI ACTGGG 1 cut(s) 459
BmsI GCATC 1 cut(s) 233
BmuI ACTGGG 1 cut(s) 459
BplI GAGNNNNNCTC 4 cut(s) 64, 96, 256, 288
BpuEI CTTGAG 3 cut(s) 217, 310, 408
BpuMI CCSGG 2 cut(s) 177, 503
BsaBI GATNNNNATC 1 cut(s) 334
BsaHI GRCGYC 1 cut(s) 134
BsaJI CCNNGG 1 cut(s) 621
BsaWI WCCGGW 1 cut(s) 208
BsaXI ACNNNNNCTCC 2 cut(s) 711, 741
Bsc4I CCNNNNNNNGG 6 cut(s) 176, 251, 470, 719, 783, 951
Bse1I ACTGG 3 cut(s) 465, 628, 689
Bse8I GATNNNNATC 1 cut(s) 334
BseAI TCCGGA 1 cut(s) 208
BseBI CCWGG 5 cut(s) 252, 435, 612, 717, 852
BseDI CCNNGG 1 cut(s) 621
BseGI GGATG 3 cut(s) 55, 403, 423
BseJI GATNNNNATC 1 cut(s) 334
BseLI CCNNNNNNNGG 6 cut(s) 176, 251, 470, 719, 783, 951
BseMII CTCAG 3 cut(s) 159, 386, 542
BseNI ACTGG 3 cut(s) 465, 628, 689
BseRI GAGGAG 1 cut(s) 59
BseXI GCAGC 2 cut(s) 201, 773
Bsh1236I CGCG 2 cut(s) 67, 906
BshFI GGCC 1 cut(s) 319
BsiHKAI GWGCWC 2 cut(s) 77, 269
BsiSI CCGG 3 cut(s) 176, 209, 502
BslFI GGGAC 4 cut(s) 296, 713, 800, 983
BslI CCNNNNNNNGG 6 cut(s) 176, 251, 470, 719, 783, 951
BsmAI GTCTC 3 cut(s) 460, 675, 690
BsmFI GGGAC 4 cut(s) 296, 713, 800, 983
BsnI GGCC 1 cut(s) 319
Bsp1286I GDGCHC 3 cut(s) 77, 182, 269
Bsp13I TCCGGA 1 cut(s) 208
Bsp143I GATC 4 cut(s) 120, 293, 478, 617
BspACI CCGC 3 cut(s) 348, 794, 904
BspANI GGCC 1 cut(s) 319
BspCNI CTCAG 3 cut(s) 158, 385, 541
BspEI TCCGGA 1 cut(s) 208
BspFNI CGCG 2 cut(s) 67, 906
BspPI GGATC 2 cut(s) 288, 612
BspQI GCTCTTC 2 cut(s) 187, 606
BsrI ACTGG 3 cut(s) 465, 628, 689
BssECI CCNNGG 1 cut(s) 621
BssMI GATC 4 cut(s) 120, 293, 478, 617
BssNI GRCGYC 1 cut(s) 134
BssSI CACGAG 1 cut(s) 262
Bst2BI CACGAG 1 cut(s) 262
Bst2UI CCWGG 5 cut(s) 252, 435, 612, 717, 852
Bst4CI ACNGT 2 cut(s) 876, 927
Bst6I CTCTTC 3 cut(s) 187, 606, 834
BstACI GRCGYC 1 cut(s) 134
BstAPI GCANNNNNTGC 1 cut(s) 18
BstC8I GCNNGC 3 cut(s) 167, 525, 942
BstDEI CTNAG 3 cut(s) 145, 372, 528
BstENI CCTNNNNNAGG 1 cut(s) 781
BstF5I GGATG 3 cut(s) 55, 403, 423
BstFNI CGCG 2 cut(s) 67, 906
BstHHI GCGC 1 cut(s) 67
BstKTI GATC 4 cut(s) 123, 296, 481, 620
BstMAI GTCTC 3 cut(s) 460, 675, 690
BstMBI GATC 4 cut(s) 120, 293, 478, 617
BstMWI GCNNNNNNNGC 2 cut(s) 18, 186
BstNI CCWGG 5 cut(s) 252, 435, 612, 717, 852
BstNSI RCATGY 1 cut(s) 944
BstSCI CCNGG 7 cut(s) 175, 250, 433, 501, 610, 715, 850
BstUI CGCG 2 cut(s) 67, 906
BstV1I GCAGC 2 cut(s) 201, 773
BstX2I RGATCY 2 cut(s) 293, 617
BstXI CCANNNNNNTGG 2 cut(s) 311, 414
BstYI RGATCY 2 cut(s) 293, 617
BsuI GTATCC 1 cut(s) 483
BsuRI GGCC 1 cut(s) 319
BtsCI GGATG 3 cut(s) 55, 403, 423
BtsI GCAGTG 2 cut(s) 219, 730
BtsIMutI CAGTG 3 cut(s) 219, 472, 730
Cac8I GCNNGC 3 cut(s) 167, 525, 942
CaiI CAGNNNCTG 1 cut(s) 684
CfoI GCGC 1 cut(s) 67
Cfr13I GGNCC 2 cut(s) 625, 746
CseI GACGC 3 cut(s) 123, 767, 895
Csp6I GTAC 1 cut(s) 389
CspCI CAANNNNNGTGG 2 cut(s) 812, 847
CviAII CATG 2 cut(s) 941, 951
CviQI GTAC 1 cut(s) 389
DdeI CTNAG 3 cut(s) 145, 372, 528
DpnI GATC 4 cut(s) 122, 295, 480, 619
DpnII GATC 4 cut(s) 120, 293, 478, 617
EaeI YGGCCR 1 cut(s) 317
Eam1104I CTCTTC 3 cut(s) 187, 606, 834
EarI CTCTTC 3 cut(s) 187, 606, 834
Ecl136II GAGCTC 1 cut(s) 267
Eco24I GRGCYC 2 cut(s) 182, 269
Eco47I GGWCC 2 cut(s) 625, 746
Eco53kI GAGCTC 1 cut(s) 267
Eco57I CTGAAG 1 cut(s) 691
EcoICRI GAGCTC 1 cut(s) 267
EcoNI CCTNNNNNAGG 1 cut(s) 781
EcoRII CCWGG 5 cut(s) 250, 433, 610, 715, 850
EcoT38I GRGCYC 2 cut(s) 182, 269
FaeI CATG 2 cut(s) 944, 954
FaqI GGGAC 4 cut(s) 296, 713, 800, 983
FatI CATG 2 cut(s) 940, 950
FblI GTMKAC 1 cut(s) 858
Fnu4HI GCNGC 3 cut(s) 190, 762, 904
FokI GGATG 3 cut(s) 62, 410, 430
FriOI GRGCYC 2 cut(s) 182, 269
Fsp4HI GCNGC 3 cut(s) 190, 762, 904
FspBI CTAG 3 cut(s) 392, 813, 891
GlaI GCGC 1 cut(s) 66
GluI GCNGC 3 cut(s) 190, 762, 904
HaeIII GGCC 1 cut(s) 319
HapII CCGG 3 cut(s) 176, 209, 502
HgaI GACGC 3 cut(s) 123, 767, 895
HhaI GCGC 1 cut(s) 67
Hin1I GRCGYC 1 cut(s) 134
Hin1II CATG 2 cut(s) 944, 954
Hin6I GCGC 1 cut(s) 65
HinP1I GCGC 1 cut(s) 65
HinfI GANTC 6 cut(s) 323, 330, 359, 641, 662, 768
HpaII CCGG 3 cut(s) 176, 209, 502
HphI GGTGA 5 cut(s) 53, 362, 554, 763, 839
Hpy166II GTNNAC 3 cut(s) 6, 353, 859
Hpy188I TCNGA 5 cut(s) 229, 531, 622, 710, 872
Hpy188III TCNNGA 4 cut(s) 209, 312, 327, 920
Hpy8I GTNNAC 3 cut(s) 6, 353, 859
Hpy99I CGWCG 1 cut(s) 139
HpyAV CCTTC 1 cut(s) 807
HpyCH4III ACNGT 2 cut(s) 876, 927
HpyCH4IV ACGT 2 cut(s) 355, 493
HpyCH4V TGCA 5 cut(s) 12, 21, 224, 823, 940
HpyF10VI GCNNNNNNNGC 2 cut(s) 18, 186
HpyF3I CTNAG 3 cut(s) 145, 372, 528
HpySE526I ACGT 2 cut(s) 355, 493
Hsp92I GRCGYC 1 cut(s) 134
Hsp92II CATG 2 cut(s) 944, 954
HspAI GCGC 1 cut(s) 65
Kpn2I TCCGGA 1 cut(s) 208
Kzo9I GATC 4 cut(s) 120, 293, 478, 617
LguI GCTCTTC 2 cut(s) 187, 606
LmnI GCTCC 3 cut(s) 72, 272, 958
Lsp1109I GCAGC 2 cut(s) 201, 773
LweI GCATC 1 cut(s) 233
MaeI CTAG 3 cut(s) 392, 813, 891
MaeII ACGT 2 cut(s) 355, 493
MaeIII GTNAC 1 cut(s) 876
MalI GATC 4 cut(s) 122, 295, 480, 619
MboI GATC 4 cut(s) 120, 293, 478, 617
MboII GAAGA 5 cut(s) 65, 68, 174, 593, 851
MflI RGATCY 2 cut(s) 293, 617
MhlI GDGCHC 3 cut(s) 77, 182, 269
MluCI AATT 3 cut(s) 16, 140, 657
MlyI GAGTC 1 cut(s) 317
MroI TCCGGA 1 cut(s) 208
MroXI GAANNNNTTC 1 cut(s) 661
MseI TTAA 3 cut(s) 102, 483, 588
MslI CAYNNNNRTG 3 cut(s) 26, 338, 741
MspI CCGG 3 cut(s) 176, 209, 502
MspR9I CCNGG 7 cut(s) 177, 252, 435, 503, 612, 717, 852
MvaI CCWGG 5 cut(s) 252, 435, 612, 717, 852
MvnI CGCG 2 cut(s) 67, 906
MwoI GCNNNNNNNGC 2 cut(s) 18, 186
NciI CCSGG 2 cut(s) 177, 503
NdeII GATC 4 cut(s) 120, 293, 478, 617
NlaIII CATG 2 cut(s) 944, 954
NspI RCATGY 1 cut(s) 944
PaeI GCATGC 1 cut(s) 944
PciSI GCTCTTC 2 cut(s) 187, 606
PdmI GAANNNNTTC 1 cut(s) 661
PfeI GAWTC 5 cut(s) 330, 359, 641, 662, 768
PflMI CCANNNNNTGG 1 cut(s) 951
PkrI GCNGC 3 cut(s) 191, 763, 905
PleI GAGTC 1 cut(s) 317
PpsI GAGTC 1 cut(s) 317
Psp124BI GAGCTC 1 cut(s) 269
Psp6I CCWGG 5 cut(s) 250, 433, 610, 715, 850
PspGI CCWGG 5 cut(s) 250, 433, 610, 715, 850
PspPI GGNCC 2 cut(s) 625, 746
PstNI CAGNNNCTG 1 cut(s) 684
PsuI RGATCY 2 cut(s) 293, 617
RsaI GTAC 1 cut(s) 390
RsaNI GTAC 1 cut(s) 389
RseI CAYNNNNRTG 3 cut(s) 26, 338, 741
SacI GAGCTC 1 cut(s) 269
SapI GCTCTTC 2 cut(s) 187, 606
SaqAI TTAA 3 cut(s) 102, 483, 588
SatI GCNGC 3 cut(s) 190, 762, 904
Sau3AI GATC 4 cut(s) 120, 293, 478, 617
Sau96I GGNCC 2 cut(s) 625, 746
SchI GAGTC 1 cut(s) 317
ScrFI CCNGG 7 cut(s) 177, 252, 435, 503, 612, 717, 852
SduI GDGCHC 3 cut(s) 77, 182, 269
SfaNI GCATC 1 cut(s) 233
SinI GGWCC 2 cut(s) 625, 746
SmiMI CAYNNNNRTG 3 cut(s) 26, 338, 741
SmlI CTYRAG 3 cut(s) 196, 325, 423
SmoI CTYRAG 3 cut(s) 196, 325, 423
SphI GCATGC 1 cut(s) 944
Sse9I AATT 3 cut(s) 16, 140, 657
SsiI CCGC 3 cut(s) 348, 794, 904
SspMI CTAG 3 cut(s) 392, 813, 891
SstI GAGCTC 1 cut(s) 269
StyD4I CCNGG 7 cut(s) 175, 250, 433, 501, 610, 715, 850
TaaI ACNGT 2 cut(s) 876, 927
TaiI ACGT 2 cut(s) 358, 496
TaqI TCGA 4 cut(s) 137, 185, 513, 782
TasI AATT 3 cut(s) 16, 140, 657
TauI GCSGC 1 cut(s) 906
TfiI GAWTC 5 cut(s) 330, 359, 641, 662, 768
Tru1I TTAA 3 cut(s) 102, 483, 588
Tru9I TTAA 3 cut(s) 102, 483, 588
TscAI CASTG 3 cut(s) 226, 472, 730
TseI GCWGC 2 cut(s) 189, 761
TspDTI ATGAA 3 cut(s) 66, 75, 431
TspGWI ACGGA 1 cut(s) 502
TspRI CASTG 3 cut(s) 226, 472, 730
Van91I CCANNNNNTGG 1 cut(s) 951
VpaK11BI GGWCC 2 cut(s) 625, 746
XagI CCTNNNNNAGG 1 cut(s) 781
XapI RAATTY 1 cut(s) 140
XceI RCATGY 1 cut(s) 944
XmiI GTMKAC 1 cut(s) 858
XmnI GAANNNNTTC 1 cut(s) 661
XspI CTAG 3 cut(s) 392, 813, 891
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.