FvH4_5g23860

Protein Brevis radix-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0005297
Physical Location & Seq
Reverse (-)
15144439 .. 15150618
6180 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g23860.t5

Sequence Viewer

Length: 1035 bp
ATGTTTACATGCATAGCATGTACGAAGCAAACGGAGGAGGACGGAGGAGGAGAGCGTGGGAGTGGCACCCCAAGTACAAAAGAAGCCGTCAAAAGCCTGACCACCCAGATCAAGGATATGGCATTGAAATTCTCTGGTGCTTACAAGCAATGCAAACCATGCACAGGATCAAGCAGTAGCTTCAAGAAGGGGCAAAGGAGACCTTACCCTGATTTTGACACTGCTTCTGAAGGGGTTCCATACTCTTATATGGGAGCTGCAAGCTCAAGTTCTACTCCTGCTTGGGACTTCACCTCTAATCATCAACTTGGTGCAAGAACAGACTCAAGATTCACGCGGCCATATGGTGGTGGTGGTGATCAGACTCGAGATTCAACATGTGATGTTGTATTAGAGGATGAGGATGAGCCCAAGGAGTGGATGGCACAGGTTGAACCAGGAGTGCACATCACTTTTGTGTCGCTTCCTAATGGTGGAAATGATCTTAAACGAATTCGCTTCAGCCGAGAGATGTTTAACAAATGGCAAGCTCAGCGATGGTGGGGCGAGAATTATGACCGCATAATGGAGCTCTACAATGTCCAGAGATTCAACCGGCAAGCTCTTCACACTCCACCAAGGTCTGAAGATGAGCCACCAAGAGAATCTTTTTACTCAAGGATGGACTCTGCTAGGGAAAGCCCTATGGTTCCAACAAACTGGACACCACGACACCACTATAAACCCTCTGGAGCTGGAAGCGGTGGATACTTCCCATCTGACGGTCATCAGTACAATGCAGGTGGATCTATTGATGCTTCGCGAACAACAACCTCATCTAGAGATGAAGCTTCAGTCTCTATTAGCAATGCTAGTGATGTGGAGTCAGAATGGGTTGAACAGGATGAGCCTGGGGTCTATATCACCATTCGACAGCTAGCCGACGGCACTAGGGAGCTCCGGCGTGTTAGGTTCAGTCGCGAAAGGTTCGGGGAGAGGAACGCGAAGACATGGTGGGAAGAAAACCGAGAGAGAATACAAGCTCAATACCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BRX BRX_N

Protein Analysis

345

Amino Acids

38.95

Weight (kDa)

5.97

Isoelectric Point (pI)

51.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BRX_N PF13713 19 - 54 3.5e-17 Transcription factor BRX N-terminal domain
BRX PF08381 138 - 192 3e-26 Transcription factor regulating root and shoot growth via Pin3
BRX PF08381 288 - 343 2e-27 Transcription factor regulating root and shoot growth via Pin3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 770
Acc36I ACCTGC 1 cut(s) 770
AccB1I GGYRCC 1 cut(s) 65
AccB7I CCANNNNNTGG 2 cut(s) 347, 417
AccII CGCG 4 cut(s) 337, 802, 960, 983
AciI CCGC 3 cut(s) 337, 559, 741
AclWI GGATC 2 cut(s) 175, 793
AcoI YGGCCR 1 cut(s) 338
AcsI RAATTY 2 cut(s) 128, 492
AcuI CTGAAG 4 cut(s) 249, 484, 645, 816
AfaI GTAC 3 cut(s) 22, 76, 773
AfiI CCNNNNNNNGG 7 cut(s) 112, 164, 347, 417, 473, 565, 761
AflIII ACRYGT 1 cut(s) 377
AgsI TTSAA 6 cut(s) 127, 184, 375, 434, 592, 878
AjnI CCWGG 2 cut(s) 436, 889
AleI CACNNNNGTG 1 cut(s) 455
Alw21I GWGCWC 3 cut(s) 447, 573, 939
Alw26I GTCTC 2 cut(s) 193, 841
Alw44I GTGCAC 1 cut(s) 443
AlwI GGATC 2 cut(s) 175, 793
Ama87I CYCGRG 1 cut(s) 366
AoxI GGCC 1 cut(s) 338
ApaLI GTGCAC 1 cut(s) 443
ApeKI GCWGC 1 cut(s) 257
ApoI RAATTY 2 cut(s) 128, 492
Asp700I GAANNNNTTC 1 cut(s) 234
AsuHPI GGTGA 3 cut(s) 283, 368, 895
AsuNHI GCTAGC 1 cut(s) 916
AvaI CYCGRG 1 cut(s) 366
BaeGI GKGCMC 1 cut(s) 447
BanI GGYRCC 1 cut(s) 65
BanII GRGCYC 3 cut(s) 411, 573, 939
BbsI GAAGAC 1 cut(s) 992
Bbv12I GWGCWC 3 cut(s) 447, 573, 939
BbvI GCAGC 1 cut(s) 244
BccI CCATC 4 cut(s) 415, 531, 655, 763
BceAI ACGGC 2 cut(s) 71, 940
BciT130I CCWGG 2 cut(s) 438, 891
BciVI GTATCC 1 cut(s) 740
BclI TGATCA 1 cut(s) 358
BcoDI GTCTC 2 cut(s) 193, 841
BfaI CTAG 5 cut(s) 672, 819, 852, 917, 930
BfuAI ACCTGC 1 cut(s) 770
BfuI GTATCC 1 cut(s) 740
BisI GCNGC 2 cut(s) 258, 338
BlpI GCTNAGC 1 cut(s) 531
BlsI GCNGC 2 cut(s) 259, 339
Bme1390I CCNGG 2 cut(s) 438, 891
BmeT110I CYCGRG 1 cut(s) 366
BmiI GGNNCC 3 cut(s) 67, 237, 690
BmrFI CCNGG 2 cut(s) 438, 891
BmsI GCATC 1 cut(s) 784
BmtI GCTAGC 1 cut(s) 920
BpiI GAAGAC 1 cut(s) 992
BpmI CTGGAG 1 cut(s) 750
Bpu1102I GCTNAGC 1 cut(s) 531
BpuEI CTTGAG 3 cut(s) 250, 310, 640
BsaI GGTCTC 1 cut(s) 193
BsaJI CCNNGG 3 cut(s) 411, 617, 890
Bsc4I CCNNNNNNNGG 7 cut(s) 112, 164, 347, 417, 473, 565, 761
Bse118I RCCGGY 1 cut(s) 594
Bse1I ACTGG 1 cut(s) 704
Bse3DI GCAATG 2 cut(s) 155, 853
BseBI CCWGG 2 cut(s) 438, 891
BseDI CCNNGG 3 cut(s) 411, 617, 890
BseGI GGATG 5 cut(s) 403, 409, 426, 666, 889
BseLI CCNNNNNNNGG 7 cut(s) 112, 164, 347, 417, 473, 565, 761
BseMI GCAATG 2 cut(s) 155, 853
BseMII CTCAG 1 cut(s) 545
BseNI ACTGG 1 cut(s) 704
BseRI GAGGAG 3 cut(s) 50, 60, 63
BseSI GKGCMC 1 cut(s) 447
BseXI GCAGC 1 cut(s) 244
Bsh1236I CGCG 4 cut(s) 337, 802, 960, 983
BshFI GGCC 1 cut(s) 340
BshNI GGYRCC 1 cut(s) 65
BsiHKAI GWGCWC 3 cut(s) 447, 573, 939
BsiHKCI CYCGRG 1 cut(s) 366
BsiSI CCGG 2 cut(s) 595, 940
BslFI GGGAC 1 cut(s) 299
BslI CCNNNNNNNGG 7 cut(s) 112, 164, 347, 417, 473, 565, 761
BsmAI GTCTC 2 cut(s) 193, 841
BsmFI GGGAC 1 cut(s) 299
BsnI GGCC 1 cut(s) 340
Bso31I GGTCTC 1 cut(s) 193
BsoBI CYCGRG 1 cut(s) 366
Bsp1286I GDGCHC 4 cut(s) 411, 447, 573, 939
Bsp143I GATC 5 cut(s) 108, 167, 358, 481, 785
Bsp1720I GCTNAGC 1 cut(s) 531
Bsp68I TCGCGA 2 cut(s) 802, 960
BspACI CCGC 3 cut(s) 337, 559, 741
BspANI GGCC 1 cut(s) 340
BspCNI CTCAG 1 cut(s) 544
BspFNI CGCG 4 cut(s) 337, 802, 960, 983
BspLI GGNNCC 3 cut(s) 67, 237, 690
BspMI ACCTGC 1 cut(s) 770
BspOI GCTAGC 1 cut(s) 920
BspPI GGATC 2 cut(s) 175, 793
BspQI GCTCTTC 1 cut(s) 609
BspT107I GGYRCC 1 cut(s) 65
BspTNI GGTCTC 1 cut(s) 193
BsrDI GCAATG 2 cut(s) 155, 853
BsrFI RCCGGY 1 cut(s) 594
BsrI ACTGG 1 cut(s) 704
BssAI RCCGGY 1 cut(s) 594
BssECI CCNNGG 3 cut(s) 411, 617, 890
BssMI GATC 5 cut(s) 108, 167, 358, 481, 785
BssT1I CCWWGG 2 cut(s) 411, 617
Bst2UI CCWGG 2 cut(s) 438, 891
Bst4CI ACNGT 1 cut(s) 764
Bst6I CTCTTC 1 cut(s) 609
BstAPI GCANNNNNTGC 1 cut(s) 159
BstC8I GCNNGC 4 cut(s) 262, 528, 600, 918
BstDEI CTNAG 1 cut(s) 531
BstF5I GGATG 5 cut(s) 403, 409, 426, 666, 889
BstFNI CGCG 4 cut(s) 337, 802, 960, 983
BstKTI GATC 5 cut(s) 111, 170, 361, 484, 788
BstMAI GTCTC 2 cut(s) 193, 841
BstMBI GATC 5 cut(s) 108, 167, 358, 481, 785
BstMWI GCNNNNNNNGC 2 cut(s) 159, 532
BstNI CCWGG 2 cut(s) 438, 891
BstNSI RCATGY 3 cut(s) 12, 21, 381
BstSCI CCNGG 2 cut(s) 436, 889
BstSLI GKGCMC 1 cut(s) 447
BstUI CGCG 4 cut(s) 337, 802, 960, 983
BstV1I GCAGC 1 cut(s) 244
BstV2I GAAGAC 1 cut(s) 992
BstX2I RGATCY 1 cut(s) 785
BstXI CCANNNNNNTGG 1 cut(s) 699
BstYI RGATCY 1 cut(s) 785
BsuI GTATCC 1 cut(s) 740
BsuRI GGCC 1 cut(s) 340
BtgZI GCGATG 1 cut(s) 550
BtsCI GGATG 5 cut(s) 403, 409, 426, 666, 889
BtsI GCAGTG 1 cut(s) 219
BtsIMutI CAGTG 1 cut(s) 219
BtuMI TCGCGA 2 cut(s) 802, 960
BveI ACCTGC 1 cut(s) 770
Cac8I GCNNGC 4 cut(s) 262, 528, 600, 918
Cfr10I RCCGGY 1 cut(s) 594
Csp6I GTAC 3 cut(s) 21, 75, 772
CspCI CAANNNNNGTGG 2 cut(s) 763, 798
CviAII CATG 5 cut(s) 9, 18, 159, 378, 990
CviQI GTAC 3 cut(s) 21, 75, 772
DdeI CTNAG 1 cut(s) 531
DpnI GATC 5 cut(s) 110, 169, 360, 483, 787
DpnII GATC 5 cut(s) 108, 167, 358, 481, 785
EaeI YGGCCR 1 cut(s) 338
Eam1104I CTCTTC 1 cut(s) 609
EarI CTCTTC 1 cut(s) 609
Ecl136II GAGCTC 2 cut(s) 571, 937
Eco130I CCWWGG 2 cut(s) 411, 617
Eco24I GRGCYC 3 cut(s) 411, 573, 939
Eco31I GGTCTC 1 cut(s) 193
Eco53kI GAGCTC 2 cut(s) 571, 937
Eco57I CTGAAG 4 cut(s) 249, 484, 645, 816
Eco88I CYCGRG 1 cut(s) 366
EcoICRI GAGCTC 2 cut(s) 571, 937
EcoRI GAATTC 1 cut(s) 492
EcoRII CCWGG 2 cut(s) 436, 889
EcoT14I CCWWGG 2 cut(s) 411, 617
EcoT22I ATGCAT 1 cut(s) 14
EcoT38I GRGCYC 3 cut(s) 411, 573, 939
ErhI CCWWGG 2 cut(s) 411, 617
FaeI CATG 5 cut(s) 12, 21, 162, 381, 993
FalI AAGNNNNNCTT 4 cut(s) 187, 219, 631, 663
FaqI GGGAC 1 cut(s) 299
FatI CATG 5 cut(s) 8, 17, 158, 377, 989
FauNDI CATATG 1 cut(s) 343
FbaI TGATCA 1 cut(s) 358
Fnu4HI GCNGC 2 cut(s) 258, 338
FokI GGATG 5 cut(s) 410, 416, 433, 673, 896
FriOI GRGCYC 3 cut(s) 411, 573, 939
Fsp4HI GCNGC 2 cut(s) 258, 338
FspBI CTAG 5 cut(s) 672, 819, 852, 917, 930
GluI GCNGC 2 cut(s) 258, 338
GsuI CTGGAG 1 cut(s) 750
HaeIII GGCC 1 cut(s) 340
HapII CCGG 2 cut(s) 595, 940
Hin1II CATG 5 cut(s) 12, 21, 162, 381, 993
HindIII AAGCTT 1 cut(s) 828
HinfI GANTC 8 cut(s) 323, 330, 364, 371, 588, 644, 665, 863
HpaII CCGG 2 cut(s) 595, 940
HphI GGTGA 3 cut(s) 283, 368, 895
Hpy166II GTNNAC 2 cut(s) 6, 445
Hpy188I TCNGA 5 cut(s) 229, 363, 625, 760, 868
Hpy188III TCNNGA 8 cut(s) 184, 327, 368, 583, 729, 801, 819, 959
Hpy8I GTNNAC 2 cut(s) 6, 445
Hpy99I CGWCG 1 cut(s) 926
HpyAV CCTTC 2 cut(s) 181, 224
HpyCH4III ACNGT 1 cut(s) 764
HpyCH4V TGCA 7 cut(s) 12, 153, 162, 260, 314, 445, 779
HpyF10VI GCNNNNNNNGC 2 cut(s) 159, 532
HpyF3I CTNAG 1 cut(s) 531
Hsp92II CATG 5 cut(s) 12, 21, 162, 381, 993
Ksp22I TGATCA 1 cut(s) 358
Kzo9I GATC 5 cut(s) 108, 167, 358, 481, 785
LguI GCTCTTC 1 cut(s) 609
LmnI GCTCC 5 cut(s) 254, 568, 731, 934, 942
Lsp1109I GCAGC 1 cut(s) 244
LweI GCATC 1 cut(s) 784
MaeI CTAG 5 cut(s) 672, 819, 852, 917, 930
MalI GATC 5 cut(s) 110, 169, 360, 483, 787
MboI GATC 5 cut(s) 108, 167, 358, 481, 785
MboII GAAGA 4 cut(s) 596, 638, 997, 1010
MflI RGATCY 1 cut(s) 785
MhlI GDGCHC 4 cut(s) 411, 447, 573, 939
MluCI AATT 3 cut(s) 128, 492, 550
MlyI GAGTC 4 cut(s) 317, 358, 659, 872
MmeI TCCRAC 1 cut(s) 716
Mph1103I ATGCAT 1 cut(s) 14
MroXI GAANNNNTTC 1 cut(s) 234
MseI TTAA 3 cut(s) 486, 516, 1033
MslI CAYNNNNRTG 1 cut(s) 455
MspI CCGG 2 cut(s) 595, 940
MspR9I CCNGG 2 cut(s) 438, 891
MvaI CCWGG 2 cut(s) 438, 891
MvnI CGCG 4 cut(s) 337, 802, 960, 983
MwoI GCNNNNNNNGC 2 cut(s) 159, 532
NdeI CATATG 1 cut(s) 343
NdeII GATC 5 cut(s) 108, 167, 358, 481, 785
NheI GCTAGC 1 cut(s) 916
NlaIII CATG 5 cut(s) 12, 21, 162, 381, 993
NlaIV GGNNCC 3 cut(s) 67, 237, 690
NmeAIII GCCGAG 1 cut(s) 530
NruI TCGCGA 2 cut(s) 802, 960
NsiI ATGCAT 1 cut(s) 14
NspI RCATGY 3 cut(s) 12, 21, 381
OliI CACNNNNGTG 1 cut(s) 455
PaeR7I CTCGAG 1 cut(s) 366
PaqCI CACCTGC 1 cut(s) 770
PciI ACATGT 1 cut(s) 377
PciSI GCTCTTC 1 cut(s) 609
PcsI WCGNNNNNNNCGW 1 cut(s) 502
PdmI GAANNNNTTC 1 cut(s) 234
PfeI GAWTC 4 cut(s) 330, 371, 588, 644
PflMI CCANNNNNTGG 2 cut(s) 347, 417
PkrI GCNGC 2 cut(s) 259, 339
PleI GAGTC 4 cut(s) 317, 358, 659, 871
PpsI GAGTC 4 cut(s) 317, 358, 659, 871
PscI ACATGT 1 cut(s) 377
Psp124BI GAGCTC 2 cut(s) 573, 939
Psp6I CCWGG 2 cut(s) 436, 889
PspGI CCWGG 2 cut(s) 436, 889
PspN4I GGNNCC 3 cut(s) 67, 237, 690
PsuI RGATCY 1 cut(s) 785
RruI TCGCGA 2 cut(s) 802, 960
RsaI GTAC 3 cut(s) 22, 76, 773
RsaNI GTAC 3 cut(s) 21, 75, 772
RseI CAYNNNNRTG 1 cut(s) 455
SacI GAGCTC 2 cut(s) 573, 939
SapI GCTCTTC 1 cut(s) 609
SaqAI TTAA 3 cut(s) 486, 516, 1033
SatI GCNGC 2 cut(s) 258, 338
Sau3AI GATC 5 cut(s) 108, 167, 358, 481, 785
SchI GAGTC 4 cut(s) 317, 358, 659, 872
ScrFI CCNGG 2 cut(s) 438, 891
SduI GDGCHC 4 cut(s) 411, 447, 573, 939
SfaNI GCATC 1 cut(s) 784
Sfr274I CTCGAG 1 cut(s) 366
SlaI CTCGAG 1 cut(s) 366
SmiMI CAYNNNNRTG 1 cut(s) 455
SmlI CTYRAG 4 cut(s) 265, 325, 366, 655
SmoI CTYRAG 4 cut(s) 265, 325, 366, 655
Sse9I AATT 3 cut(s) 128, 492, 550
SsiI CCGC 3 cut(s) 337, 559, 741
SspMI CTAG 5 cut(s) 672, 819, 852, 917, 930
SstI GAGCTC 2 cut(s) 573, 939
StyD4I CCNGG 2 cut(s) 436, 889
StyI CCWWGG 2 cut(s) 411, 617
TaaI ACNGT 1 cut(s) 764
TaqI TCGA 2 cut(s) 367, 910
TasI AATT 3 cut(s) 128, 492, 550
TatI WGTACW 2 cut(s) 74, 771
TauI GCSGC 1 cut(s) 340
TfiI GAWTC 4 cut(s) 330, 371, 588, 644
Tru1I TTAA 3 cut(s) 486, 516, 1033
Tru9I TTAA 3 cut(s) 486, 516, 1033
TscAI CASTG 1 cut(s) 226
TseI GCWGC 1 cut(s) 257
TspDTI ATGAA 1 cut(s) 840
TspGWI ACGGA 2 cut(s) 47, 57
TspRI CASTG 1 cut(s) 226
Van91I CCANNNNNTGG 2 cut(s) 347, 417
VneI GTGCAC 1 cut(s) 443
XapI RAATTY 2 cut(s) 128, 492
XbaI TCTAGA 1 cut(s) 818
XceI RCATGY 3 cut(s) 12, 21, 381
XcmI CCANNNNNNNNNTGG 1 cut(s) 418
XhoI CTCGAG 1 cut(s) 366
XmnI GAANNNNTTC 1 cut(s) 234
XspI CTAG 5 cut(s) 672, 819, 852, 917, 930
Zsp2I ATGCAT 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.