Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0005297

Physical Location & Seq

Genomic Coordinates Forward (+)

2407659 .. 2413641

Gene Structure 5983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G021900.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGTTTACGTGCATAGCATGTACGAAGCAGACGGACGATGGTGGAGAGGAAGGAGGAGCGCGTGGCAGTGGCACCCCAAGTACAAAAGAAGCCGTCAAAAGCCTGACGGCGCAGATCAAAGATATGGCACTGAAATTCTCTGGTGCTTACAAGCAATGCAAACCATGCACAGGGTCGAGTAATTATAAGAAAGGAACACCGAGACCTTACCCGGATTTTGATACTGCTTCAGAAGGGATTCCATACCCCTATGCTGCAAGCTCAAGTTCTACACCAGCTTGGGACTTCACCTCTAATCATCAGTTGGGTGCAAGATCAGACTCAAGATTTACCAGAGCATATGGTGGGGGTGATCGGACCCCGGGAGGTGCATCCTATGCTCAGTCTTGTGATGTAGTTTTGGATGAGGATGAGCCTAAGGAGTGGATGGCACAAGTGGAACCCGGCGTACACATCACTTTCGTATCTCTTCCTAATGGGGGAAATGATCTCAAACGAATTCGTTTCAGCCGAGAGATGTTTAACAAATGGCAAGCTCAGCGATGGTGGGGTGAGAATTATGACCGCATCATGGAGCTCTACAATGTTCAGAGATTCAACCGGCAAGCTCTGCACACTCCTCCAAGGTCTGAAGATGAGCAGAGAGATTCTTCTTATTCAAGGATGGGATCTGCTATGGAAAGCCCTATGGCTCCATCAAACAAGGATTGGACACCAAGGAACCAGTATAAACCCTCTGGAGCTGGAAGTAGAGGCTATTTCCCATCCGATTCTTTTGATCATGGTGGTGGTGGTCACCACTATAATGCTGGTGGTTCTAGTGCTTATGGAGCAGGCGGGCACAAGGGAGAGGCGTCATCTTTCGATGCTTCACGGACAACAACCTCCTCTAGAGATGAAGCTTCAATCTCAATCAGCAATGCTAGTGATGTCGAGTCAGAATGGGTTGAGGAAGATGAGCCTGGGGTATATATAACCATAAGGCAGCTAGCTGATGGCACTCGGGAACTTCGCCGTGTCCGATTCAGCCGCGAAAGGTTCGGGGAGATGAACGCAAAGTCGTGGTGGGAAGAAAACAGAGAGAGAATACAAGCTCAATACCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRX BRX_N

Protein Analysis

369

Amino Acids

40.89

Weight (kDa)

5.9

Isoelectric Point (pI)

50.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005297)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31880 AT1G31880 AT2G21030 AT2G35600 AT2G35600 AT2G35600
fragaria_vesca	FvH4_5g23860 FvH4_5g23860 FvH4_5g23860 FvH4_5g23860 FvH4_5g23860
malus_domestica	MD06G1014400.v1.1
prunus_persica	Prupe.5G021900_v2.0.a1 Prupe.5G021900_v2.0.a1 Prupe.5G021900_v2.0.a1 Prupe.5G021900_v2.0.a1
pyrus_communis	pycom06g01150
rosa_chinensis	RchiOBHm_Chr7g0213251
rosa_laevigata	RLG00000002818
rosa_multiflora	Rmu_ssc0000084.1_g000024
rosa_roxburghii	Rroxscaffold_3G00246140
rosa_rugosa	Rorug07G0140700 Rorug07G0140700 Rorug07G0140800
rosa_samantha	Rh7AG272300 Rh7BG268000 Rh7CG291700 Rh7DG280200
rosa_wichuraiana	Rw7G023630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	186
AccB1I	GGYRCC	1 cut(s)	71
AccII	CGCG	2 cut(s)	61, 1032
AciI	CCGC	3 cut(s)	565, 837, 1030
AclWI	GGATC	1 cut(s)	676
AcsI	RAATTY	2 cut(s)	134, 498
AcuI	CTGAAG	2 cut(s)	213, 651
AcyI	GRCGYC	1 cut(s)	854
AfaI	GTAC	3 cut(s)	22, 82, 450
AfiI	CCNNNNNNNGG	3 cut(s)	170, 479, 571
AgsI	TTSAA	3 cut(s)	598, 660, 906
AjnI	CCWGG	1 cut(s)	961
Alw21I	GWGCWC	1 cut(s)	579
Alw26I	GTCTC	1 cut(s)	196
AlwI	GGATC	1 cut(s)	676
Ama87I	CYCGRG	2 cut(s)	361, 1002
ApeKI	GCWGC	2 cut(s)	254, 985
ApoI	RAATTY	2 cut(s)	134, 498
Asp700I	GAANNNNTTC	1 cut(s)	237
AspLEI	GCGC	2 cut(s)	61, 112
AspS9I	GGNCC	1 cut(s)	357
AsuC2I	CCSGG	4 cut(s)	212, 362, 363, 444
AsuHPI	GGTGA	4 cut(s)	280, 362, 563, 788
AsuNHI	GCTAGC	1 cut(s)	988
AvaI	CYCGRG	2 cut(s)	361, 1002
AvaII	GGWCC	1 cut(s)	357
AxyI	CCTNAGG	1 cut(s)	417
BaeGI	GKGCMC	1 cut(s)	843
BaeI	ACNNNNGTAYC	2 cut(s)	447, 480
BanI	GGYRCC	1 cut(s)	71
BanII	GRGCYC	1 cut(s)	579
Bbv12I	GWGCWC	1 cut(s)	579
BbvI	GCAGC	2 cut(s)	241, 997
BccI	CCATC	7 cut(s)	32, 421, 537, 658, 703, 772, 989
BceAI	ACGGC	3 cut(s)	77, 123, 999
BciT130I	CCWGG	1 cut(s)	963
BclI	TGATCA	1 cut(s)	778
BcnI	CCSGG	4 cut(s)	212, 362, 363, 444
BcoDI	GTCTC	1 cut(s)	196
BfaI	CTAG	4 cut(s)	819, 891, 924, 989
BisI	GCNGC	3 cut(s)	255, 986, 1030
BlpI	GCTNAGC	1 cut(s)	537
BlsI	GCNGC	3 cut(s)	256, 987, 1031
Bme1390I	CCNGG	5 cut(s)	212, 362, 363, 444, 963
Bme18I	GGWCC	1 cut(s)	357
BmeT110I	CYCGRG	2 cut(s)	361, 1002
BmgT120I	GGNCC	1 cut(s)	357
BmiI	GGNNCC	5 cut(s)	73, 359, 441, 693, 722
BmrFI	CCNGG	5 cut(s)	212, 362, 363, 444, 963
BmsI	GCATC	3 cut(s)	380, 576, 856
BmtI	GCTAGC	1 cut(s)	992
BpmI	CTGGAG	1 cut(s)	759
Bpu1102I	GCTNAGC	1 cut(s)	537
BpuEI	CTTGAG	2 cut(s)	247, 307
BpuMI	CCSGG	4 cut(s)	212, 362, 363, 444
BsaAI	YACGTR	1 cut(s)	9
BsaHI	GRCGYC	1 cut(s)	854
BsaI	GGTCTC	1 cut(s)	196
BsaJI	CCNNGG	5 cut(s)	360, 361, 623, 716, 962
Bsc4I	CCNNNNNNNGG	3 cut(s)	170, 479, 571
Bse118I	RCCGGY	1 cut(s)	600
Bse1I	ACTGG	1 cut(s)	724
Bse21I	CCTNAGG	1 cut(s)	417
Bse3DI	GCAATG	2 cut(s)	161, 925
BseBI	CCWGG	1 cut(s)	963
BseDI	CCNNGG	5 cut(s)	360, 361, 623, 716, 962
BseGI	GGATG	6 cut(s)	371, 409, 415, 432, 669, 764
BseLI	CCNNNNNNNGG	3 cut(s)	170, 479, 571
BseMI	GCAATG	2 cut(s)	161, 925
BseMII	CTCAG	2 cut(s)	395, 551
BseNI	ACTGG	1 cut(s)	724
BseRI	GAGGAG	3 cut(s)	69, 609, 877
BseSI	GKGCMC	1 cut(s)	843
BseXI	GCAGC	2 cut(s)	241, 997
BsgI	GTGCAG	1 cut(s)	596
Bsh1236I	CGCG	2 cut(s)	61, 1032
BshNI	GGYRCC	1 cut(s)	71
BsiHKAI	GWGCWC	1 cut(s)	579
BsiHKCI	CYCGRG	2 cut(s)	361, 1002
BsiSI	CCGG	4 cut(s)	212, 362, 444, 601
BslFI	GGGAC	1 cut(s)	296
BslI	CCNNNNNNNGG	3 cut(s)	170, 479, 571
BsmAI	GTCTC	1 cut(s)	196
BsmFI	GGGAC	1 cut(s)	296
Bso31I	GGTCTC	1 cut(s)	196
BsoBI	CYCGRG	2 cut(s)	361, 1002
Bsp1286I	GDGCHC	2 cut(s)	579, 843
Bsp143I	GATC	6 cut(s)	114, 314, 352, 487, 668, 778
Bsp1720I	GCTNAGC	1 cut(s)	537
BspACI	CCGC	3 cut(s)	565, 837, 1030
BspCNI	CTCAG	2 cut(s)	394, 550
BspFNI	CGCG	2 cut(s)	61, 1032
BspLI	GGNNCC	5 cut(s)	73, 359, 441, 693, 722
BspOI	GCTAGC	1 cut(s)	992
BspPI	GGATC	1 cut(s)	676
BspT107I	GGYRCC	1 cut(s)	71
BspTNI	GGTCTC	1 cut(s)	196
BsrDI	GCAATG	2 cut(s)	161, 925
BsrFI	RCCGGY	1 cut(s)	600
BsrI	ACTGG	1 cut(s)	724
BssAI	RCCGGY	1 cut(s)	600
BssECI	CCNNGG	5 cut(s)	360, 361, 623, 716, 962
BssMI	GATC	6 cut(s)	114, 314, 352, 487, 668, 778
BssNI	GRCGYC	1 cut(s)	854
BssT1I	CCWWGG	2 cut(s)	623, 716
Bst2UI	CCWGG	1 cut(s)	963
Bst6I	CTCTTC	1 cut(s)	474
BstACI	GRCGYC	1 cut(s)	854
BstAPI	GCANNNNNTGC	3 cut(s)	165, 377, 610
BstBAI	YACGTR	1 cut(s)	9
BstC8I	GCNNGC	6 cut(s)	259, 534, 606, 835, 839, 990
BstDEI	CTNAG	3 cut(s)	381, 417, 537
BstEII	GGTNACC	1 cut(s)	794
BstF5I	GGATG	6 cut(s)	371, 409, 415, 432, 669, 764
BstFNI	CGCG	2 cut(s)	61, 1032
BstHHI	GCGC	2 cut(s)	61, 112
BstKTI	GATC	6 cut(s)	117, 317, 355, 490, 671, 781
BstMAI	GTCTC	1 cut(s)	196
BstMBI	GATC	6 cut(s)	114, 314, 352, 487, 668, 778
BstMWI	GCNNNNNNNGC	5 cut(s)	165, 377, 538, 610, 830
BstNI	CCWGG	1 cut(s)	963
BstNSI	RCATGY	1 cut(s)	21
BstPI	GGTNACC	1 cut(s)	794
BstSCI	CCNGG	5 cut(s)	210, 360, 361, 442, 961
BstSLI	GKGCMC	1 cut(s)	843
BstUI	CGCG	2 cut(s)	61, 1032
BstV1I	GCAGC	2 cut(s)	241, 997
BstX2I	RGATCY	1 cut(s)	668
BstYI	RGATCY	1 cut(s)	668
Bsu36I	CCTNAGG	1 cut(s)	417
BtgZI	GCGATG	1 cut(s)	556
BtsCI	GGATG	6 cut(s)	371, 409, 415, 432, 669, 764
BtsI	GCAGTG	1 cut(s)	73
BtsIMutI	CAGTG	2 cut(s)	73, 128
Cac8I	GCNNGC	6 cut(s)	259, 534, 606, 835, 839, 990
CfoI	GCGC	2 cut(s)	61, 112
Cfr10I	RCCGGY	1 cut(s)	600
Cfr13I	GGNCC	1 cut(s)	357
Cfr9I	CCCGGG	1 cut(s)	361
CseI	GACGC	1 cut(s)	843
Csp6I	GTAC	3 cut(s)	21, 81, 449
CviAII	CATG	4 cut(s)	18, 165, 571, 782
CviQI	GTAC	3 cut(s)	21, 81, 449
DdeI	CTNAG	3 cut(s)	381, 417, 537
DpnI	GATC	6 cut(s)	116, 316, 354, 489, 670, 780
DpnII	GATC	6 cut(s)	114, 314, 352, 487, 668, 778
Eam1104I	CTCTTC	1 cut(s)	474
EarI	CTCTTC	1 cut(s)	474
Ecl136II	GAGCTC	1 cut(s)	577
Eco130I	CCWWGG	2 cut(s)	623, 716
Eco24I	GRGCYC	1 cut(s)	579
Eco31I	GGTCTC	1 cut(s)	196
Eco47I	GGWCC	1 cut(s)	357
Eco53kI	GAGCTC	1 cut(s)	577
Eco57I	CTGAAG	2 cut(s)	213, 651
Eco81I	CCTNAGG	1 cut(s)	417
Eco88I	CYCGRG	2 cut(s)	361, 1002
Eco91I	GGTNACC	1 cut(s)	794
EcoICRI	GAGCTC	1 cut(s)	577
EcoO65I	GGTNACC	1 cut(s)	794
EcoRI	GAATTC	1 cut(s)	498
EcoRII	CCWGG	1 cut(s)	961
EcoT14I	CCWWGG	2 cut(s)	623, 716
EcoT38I	GRGCYC	1 cut(s)	579
ErhI	CCWWGG	2 cut(s)	623, 716
FaeI	CATG	4 cut(s)	21, 168, 574, 785
FaqI	GGGAC	1 cut(s)	296
FatI	CATG	4 cut(s)	17, 164, 570, 781
FauI	CCCGC	1 cut(s)	830
FauNDI	CATATG	1 cut(s)	340
FbaI	TGATCA	1 cut(s)	778
Fnu4HI	GCNGC	3 cut(s)	255, 986, 1030
FokI	GGATG	6 cut(s)	358, 416, 422, 439, 676, 751
FriOI	GRGCYC	1 cut(s)	579
Fsp4HI	GCNGC	3 cut(s)	255, 986, 1030
FspBI	CTAG	4 cut(s)	819, 891, 924, 989
GlaI	GCGC	2 cut(s)	60, 111
GluI	GCNGC	3 cut(s)	255, 986, 1030
GsuI	CTGGAG	1 cut(s)	759
HapII	CCGG	4 cut(s)	212, 362, 444, 601
HgaI	GACGC	1 cut(s)	843
HhaI	GCGC	2 cut(s)	61, 112
Hin1I	GRCGYC	1 cut(s)	854
Hin1II	CATG	4 cut(s)	21, 168, 574, 785
Hin6I	GCGC	2 cut(s)	59, 110
HinP1I	GCGC	2 cut(s)	59, 110
HindIII	AAGCTT	1 cut(s)	900
HinfI	GANTC	7 cut(s)	238, 320, 594, 647, 770, 935, 1023
HpaII	CCGG	4 cut(s)	212, 362, 444, 601
HphI	GGTGA	4 cut(s)	280, 362, 563, 788
Hpy166II	GTNNAC	2 cut(s)	6, 451
Hpy188I	TCNGA	8 cut(s)	232, 319, 357, 591, 631, 769, 940, 1022
Hpy188III	TCNNGA	4 cut(s)	324, 738, 891, 1004
Hpy8I	GTNNAC	2 cut(s)	6, 451
HpyAV	CCTTC	2 cut(s)	44, 227
HpyCH4IV	ACGT	1 cut(s)	8
HpyCH4V	TGCA	7 cut(s)	12, 159, 168, 257, 311, 371, 613
HpyF10VI	GCNNNNNNNGC	5 cut(s)	165, 377, 538, 610, 830
HpyF3I	CTNAG	3 cut(s)	381, 417, 537
HpySE526I	ACGT	1 cut(s)	8
Hsp92I	GRCGYC	1 cut(s)	854
Hsp92II	CATG	4 cut(s)	21, 168, 574, 785
HspAI	GCGC	2 cut(s)	59, 110
Ksp22I	TGATCA	1 cut(s)	778
Kzo9I	GATC	6 cut(s)	114, 314, 352, 487, 668, 778
LmnI	GCTCC	5 cut(s)	56, 574, 697, 740, 830
Lsp1109I	GCAGC	2 cut(s)	241, 997
LweI	GCATC	3 cut(s)	380, 576, 856
MaeI	CTAG	4 cut(s)	819, 891, 924, 989
MaeII	ACGT	1 cut(s)	8
MaeIII	GTNAC	1 cut(s)	794
MalI	GATC	6 cut(s)	116, 316, 354, 489, 670, 780
MboI	GATC	6 cut(s)	114, 314, 352, 487, 668, 778
MboII	GAAGA	5 cut(s)	461, 642, 644, 965, 1082
MflI	RGATCY	1 cut(s)	668
MhlI	GDGCHC	2 cut(s)	579, 843
MluCI	AATT	4 cut(s)	134, 181, 498, 556
MlyI	GAGTC	2 cut(s)	314, 944
MroXI	GAANNNNTTC	1 cut(s)	237
MseI	TTAA	2 cut(s)	522, 1105
MslI	CAYNNNNRTG	2 cut(s)	786, 804
MspI	CCGG	4 cut(s)	212, 362, 444, 601
MspR9I	CCNGG	5 cut(s)	212, 362, 363, 444, 963
MvaI	CCWGG	1 cut(s)	963
MvnI	CGCG	2 cut(s)	61, 1032
MwoI	GCNNNNNNNGC	5 cut(s)	165, 377, 538, 610, 830
NciI	CCSGG	4 cut(s)	212, 362, 363, 444
NdeI	CATATG	1 cut(s)	340
NdeII	GATC	6 cut(s)	114, 314, 352, 487, 668, 778
NheI	GCTAGC	1 cut(s)	988
NlaIII	CATG	4 cut(s)	21, 168, 574, 785
NlaIV	GGNNCC	5 cut(s)	73, 359, 441, 693, 722
NmeAIII	GCCGAG	1 cut(s)	536
NmuCI	GTSAC	1 cut(s)	794
NspI	RCATGY	1 cut(s)	21
PcsI	WCGNNNNNNNCGW	2 cut(s)	508, 1018
PdmI	GAANNNNTTC	1 cut(s)	237
PfeI	GAWTC	5 cut(s)	238, 594, 647, 770, 1023
PkrI	GCNGC	3 cut(s)	256, 987, 1031
PleI	GAGTC	2 cut(s)	314, 943
PpsI	GAGTC	2 cut(s)	314, 943
Ppu21I	YACGTR	1 cut(s)	9
PsiI	TTATAA	1 cut(s)	186
Psp124BI	GAGCTC	1 cut(s)	579
Psp6I	CCWGG	1 cut(s)	961
PspEI	GGTNACC	1 cut(s)	794
PspGI	CCWGG	1 cut(s)	961
PspN4I	GGNNCC	5 cut(s)	73, 359, 441, 693, 722
PspPI	GGNCC	1 cut(s)	357
PsrI	GAACNNNNNNTAC	2 cut(s)	432, 464
PsuI	RGATCY	1 cut(s)	668
RsaI	GTAC	3 cut(s)	22, 82, 450
RsaNI	GTAC	3 cut(s)	21, 81, 449
RseI	CAYNNNNRTG	2 cut(s)	786, 804
SacI	GAGCTC	1 cut(s)	579
SaqAI	TTAA	2 cut(s)	522, 1105
SatI	GCNGC	3 cut(s)	255, 986, 1030
Sau3AI	GATC	6 cut(s)	114, 314, 352, 487, 668, 778
Sau96I	GGNCC	1 cut(s)	357
SchI	GAGTC	2 cut(s)	314, 944
ScrFI	CCNGG	5 cut(s)	212, 362, 363, 444, 963
SduI	GDGCHC	2 cut(s)	579, 843
SfaNI	GCATC	3 cut(s)	380, 576, 856
SinI	GGWCC	1 cut(s)	357
SmaI	CCCGGG	1 cut(s)	363
SmiMI	CAYNNNNRTG	2 cut(s)	786, 804
SmlI	CTYRAG	2 cut(s)	262, 322
SmoI	CTYRAG	2 cut(s)	262, 322
Sse9I	AATT	4 cut(s)	134, 181, 498, 556
SsiI	CCGC	3 cut(s)	565, 837, 1030
SspMI	CTAG	4 cut(s)	819, 891, 924, 989
SstI	GAGCTC	1 cut(s)	579
StyD4I	CCNGG	5 cut(s)	210, 360, 361, 442, 961
StyI	CCWWGG	2 cut(s)	623, 716
TaiI	ACGT	1 cut(s)	11
TaqI	TCGA	3 cut(s)	176, 864, 933
TasI	AATT	4 cut(s)	134, 181, 498, 556
TatI	WGTACW	1 cut(s)	80
TauI	GCSGC	1 cut(s)	1032
TfiI	GAWTC	5 cut(s)	238, 594, 647, 770, 1023
Tru1I	TTAA	2 cut(s)	522, 1105
Tru9I	TTAA	2 cut(s)	522, 1105
TscAI	CASTG	2 cut(s)	73, 135
TseFI	GTSAC	1 cut(s)	794
TseI	GCWGC	2 cut(s)	254, 985
Tsp45I	GTSAC	1 cut(s)	794
TspDTI	ATGAA	2 cut(s)	912, 1064
TspGWI	ACGGA	2 cut(s)	47, 889
TspMI	CCCGGG	1 cut(s)	361
TspRI	CASTG	2 cut(s)	73, 135
VpaK11BI	GGWCC	1 cut(s)	357
XapI	RAATTY	2 cut(s)	134, 498
XbaI	TCTAGA	1 cut(s)	890
XceI	RCATGY	1 cut(s)	21
XcmI	CCANNNNNNNNNTGG	1 cut(s)	806
XmaI	CCCGGG	1 cut(s)	361
XmnI	GAANNNNTTC	1 cut(s)	237
XspI	CTAG	4 cut(s)	819, 891, 924, 989

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.