Rw7G023630

Protein Brevis radix-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0005297
Physical Location & Seq
Reverse (-)
28399026 .. 28405142
6117 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G023630.1

Sequence Viewer

Length: 1026 bp
ATGTTTACATGCATAGCATGTACGAAGCAACCGGAAGACGACGGAGGAGAGCGTGGGAGTGGCACCCCAAGTACAAAAGAAGCCGTCAAAAGCCTGACCACGCAGATCAAGGATATGGCATTGAAATTCTCCGGCGCGTACAAGCAATGCAAACCATGCACAGGATCAAGCAGTAGCTTCAAGAAAGGGCAAAGGAGACCTTACCCTGATTTTGATACTGCTTCTGAAGGGGTTCCATACCCTTATGCTGCAAGCTCAAGTTCTACACCTGCTTGGGACTTCACCTCTAATCATCAACTTGGTGCAAGATCAGACTCGAGATTCACTCGACCATATGGCGGCGGTGGTGATCCGACTCGAGATTCAACGTGTGAGGTTGTGTTAGAGGATGAGGATGAGCCCAAGGAGTGGATGGCACAGGTCGAACCAGGAGTGCACATCACTTTTGTGTCGCTTCCTAATGGGGGAAATGATCTTAAACGAATTCGCTTCAGCCGAGAGATGTTTAACAAATGGCAAGCTCAGCGATGGTGGGGTGAGAATTATGACCGCATAATGGAGCTCTACAATGTCCAGAGATTCAACCGGCAAGCTCTTCACACTCCACCAAGGTCTGAAGATGAGCCACCAAGAGAATCCTTTTACTCGAGGATGGACTCTGCTAGAGAAAGCCCTATGGTTCCAACAAACTGGACACCACGGCACCACTACAAACCCTCTGGAGCTGGAAGCGGAGGATACTTCCCATCTGATGGTCATCAGTATAATGCAGGTGGATCTATTGATGCATCGCGAACGACAACCTCATCTAGAGATGAAGCTTCCGTCTCTATTAGCAATGCTAGTGAGGTGGAGTCCGAATGGGTTGAACAAGATGAGCCCGGGGTCTATATAACCATTCGACAGCTAGCCGATGGCACTAGGGAGCTCCGGCGTGTTAGGTTCAGTCGTGAAAGGTTTGGGGAGAGGAATGCGAAGACATGGTGGGAAGAAAACCGAGAGAGAATACAAGCTCAATACCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BRX BRX_N

Protein Analysis

341

Amino Acids

38.68

Weight (kDa)

5.98

Isoelectric Point (pI)

52.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BRX_N PF13713 18 - 53 3.4e-17 Transcription factor BRX N-terminal domain
BRX PF08381 135 - 189 3e-26 Transcription factor regulating root and shoot growth via Pin3
BRX PF08381 285 - 340 1.9e-27 Transcription factor regulating root and shoot growth via Pin3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 277, 761
Acc36I ACCTGC 2 cut(s) 277, 761
AccB1I GGYRCC 2 cut(s) 62, 702
AccB7I CCANNNNNTGG 2 cut(s) 408, 752
AccII CGCG 2 cut(s) 137, 793
AciI CCGC 4 cut(s) 339, 342, 550, 732
AclWI GGATC 3 cut(s) 172, 344, 784
AcsI RAATTY 2 cut(s) 125, 483
AcuI CTGAAG 3 cut(s) 246, 475, 636
AfaI GTAC 3 cut(s) 22, 73, 140
AfiI CCNNNNNNNGG 6 cut(s) 161, 338, 408, 464, 556, 752
AflIII ACRYGT 1 cut(s) 368
AgsI TTSAA 5 cut(s) 124, 181, 366, 583, 869
AjnI CCWGG 1 cut(s) 427
AleI CACNNNNGTG 1 cut(s) 446
Alw21I GWGCWC 3 cut(s) 438, 564, 930
Alw26I GTCTC 2 cut(s) 190, 832
Alw44I GTGCAC 1 cut(s) 434
AlwI GGATC 3 cut(s) 172, 344, 784
Ama87I CYCGRG 4 cut(s) 316, 357, 646, 881
ApaLI GTGCAC 1 cut(s) 434
ApeKI GCWGC 1 cut(s) 248
ApoI RAATTY 2 cut(s) 125, 483
Asp700I GAANNNNTTC 1 cut(s) 231
AspLEI GCGC 1 cut(s) 137
AsuC2I CCSGG 2 cut(s) 882, 883
AsuHPI GGTGA 3 cut(s) 274, 359, 548
AsuNHI GCTAGC 1 cut(s) 907
AvaI CYCGRG 4 cut(s) 316, 357, 646, 881
BaeGI GKGCMC 1 cut(s) 438
BanI GGYRCC 2 cut(s) 62, 702
BanII GRGCYC 4 cut(s) 402, 564, 882, 930
BbsI GAAGAC 2 cut(s) 42, 983
Bbv12I GWGCWC 3 cut(s) 438, 564, 930
BbvI GCAGC 1 cut(s) 235
BccI CCATC 6 cut(s) 406, 522, 646, 746, 754, 908
BceAI ACGGC 2 cut(s) 68, 716
BciT130I CCWGG 1 cut(s) 429
BciVI GTATCC 1 cut(s) 731
BcnI CCSGG 2 cut(s) 882, 883
BcoDI GTCTC 2 cut(s) 190, 832
BfaI CTAG 5 cut(s) 663, 810, 843, 908, 921
BfuAI ACCTGC 2 cut(s) 277, 761
BfuI GTATCC 1 cut(s) 731
BisI GCNGC 2 cut(s) 249, 340
BlpI GCTNAGC 1 cut(s) 522
BlsI GCNGC 2 cut(s) 250, 341
Bme1390I CCNGG 3 cut(s) 429, 882, 883
BmeT110I CYCGRG 4 cut(s) 316, 357, 646, 881
BmiI GGNNCC 4 cut(s) 64, 234, 681, 704
BmrFI CCNGG 3 cut(s) 429, 882, 883
BmsI GCATC 2 cut(s) 775, 797
BmtI GCTAGC 1 cut(s) 911
BpiI GAAGAC 2 cut(s) 42, 983
BplI GAGNNNNNCTC 2 cut(s) 310, 342
BpmI CTGGAG 1 cut(s) 741
Bpu1102I GCTNAGC 1 cut(s) 522
BpuEI CTTGAG 1 cut(s) 241
BpuMI CCSGG 2 cut(s) 882, 883
BsaBI GATNNNNATC 1 cut(s) 756
BsaI GGTCTC 1 cut(s) 190
BsaJI CCNNGG 5 cut(s) 402, 608, 698, 881, 882
BsaWI WCCGGW 1 cut(s) 31
Bsc4I CCNNNNNNNGG 6 cut(s) 161, 338, 408, 464, 556, 752
Bse118I RCCGGY 1 cut(s) 585
Bse1I ACTGG 1 cut(s) 695
Bse3DI GCAATG 2 cut(s) 152, 844
Bse8I GATNNNNATC 1 cut(s) 756
BseBI CCWGG 1 cut(s) 429
BseDI CCNNGG 5 cut(s) 402, 608, 698, 881, 882
BseGI GGATG 4 cut(s) 394, 400, 417, 657
BseJI GATNNNNATC 1 cut(s) 756
BseLI CCNNNNNNNGG 6 cut(s) 161, 338, 408, 464, 556, 752
BseMI GCAATG 2 cut(s) 152, 844
BseMII CTCAG 1 cut(s) 536
BseNI ACTGG 1 cut(s) 695
BseRI GAGGAG 1 cut(s) 60
BseSI GKGCMC 1 cut(s) 438
BseXI GCAGC 1 cut(s) 235
Bsh1236I CGCG 2 cut(s) 137, 793
BshNI GGYRCC 2 cut(s) 62, 702
BsiHKAI GWGCWC 3 cut(s) 438, 564, 930
BsiHKCI CYCGRG 4 cut(s) 316, 357, 646, 881
BsiSI CCGG 5 cut(s) 32, 132, 586, 882, 931
BslFI GGGAC 1 cut(s) 290
BslI CCNNNNNNNGG 6 cut(s) 161, 338, 408, 464, 556, 752
BsmAI GTCTC 2 cut(s) 190, 832
BsmBI CGTCTC 1 cut(s) 832
BsmFI GGGAC 1 cut(s) 290
BsmI GAATGC 1 cut(s) 976
Bso31I GGTCTC 1 cut(s) 190
BsoBI CYCGRG 4 cut(s) 316, 357, 646, 881
Bsp1286I GDGCHC 5 cut(s) 402, 438, 564, 882, 930
Bsp143I GATC 6 cut(s) 105, 164, 308, 349, 472, 776
Bsp1720I GCTNAGC 1 cut(s) 522
Bsp68I TCGCGA 1 cut(s) 793
BspACI CCGC 4 cut(s) 339, 342, 550, 732
BspCNI CTCAG 1 cut(s) 535
BspFNI CGCG 2 cut(s) 137, 793
BspLI GGNNCC 4 cut(s) 64, 234, 681, 704
BspMI ACCTGC 2 cut(s) 277, 761
BspOI GCTAGC 1 cut(s) 911
BspPI GGATC 3 cut(s) 172, 344, 784
BspQI GCTCTTC 1 cut(s) 600
BspT107I GGYRCC 2 cut(s) 62, 702
BspTNI GGTCTC 1 cut(s) 190
BsrDI GCAATG 2 cut(s) 152, 844
BsrFI RCCGGY 1 cut(s) 585
BsrI ACTGG 1 cut(s) 695
BssAI RCCGGY 1 cut(s) 585
BssECI CCNNGG 5 cut(s) 402, 608, 698, 881, 882
BssMI GATC 6 cut(s) 105, 164, 308, 349, 472, 776
BssT1I CCWWGG 2 cut(s) 402, 608
Bst2UI CCWGG 1 cut(s) 429
Bst6I CTCTTC 1 cut(s) 600
BstAPI GCANNNNNTGC 1 cut(s) 156
BstC8I GCNNGC 4 cut(s) 253, 519, 591, 909
BstDEI CTNAG 1 cut(s) 522
BstDSI CCRYGG 1 cut(s) 698
BstF5I GGATG 4 cut(s) 394, 400, 417, 657
BstFNI CGCG 2 cut(s) 137, 793
BstHHI GCGC 1 cut(s) 137
BstKTI GATC 6 cut(s) 108, 167, 311, 352, 475, 779
BstMAI GTCTC 2 cut(s) 190, 832
BstMBI GATC 6 cut(s) 105, 164, 308, 349, 472, 776
BstMWI GCNNNNNNNGC 2 cut(s) 156, 523
BstNI CCWGG 1 cut(s) 429
BstNSI RCATGY 2 cut(s) 12, 21
BstSCI CCNGG 3 cut(s) 427, 880, 881
BstSLI GKGCMC 1 cut(s) 438
BstUI CGCG 2 cut(s) 137, 793
BstV1I GCAGC 1 cut(s) 235
BstV2I GAAGAC 2 cut(s) 42, 983
BstX2I RGATCY 1 cut(s) 776
BstXI CCANNNNNNTGG 1 cut(s) 690
BstYI RGATCY 1 cut(s) 776
BsuI GTATCC 1 cut(s) 731
BtgI CCRYGG 1 cut(s) 698
BtgZI GCGATG 2 cut(s) 541, 774
BtsCI GGATG 4 cut(s) 394, 400, 417, 657
BtuMI TCGCGA 1 cut(s) 793
BveI ACCTGC 2 cut(s) 277, 761
Cac8I GCNNGC 4 cut(s) 253, 519, 591, 909
CfoI GCGC 1 cut(s) 137
Cfr10I RCCGGY 1 cut(s) 585
Cfr9I CCCGGG 1 cut(s) 881
Csp6I GTAC 3 cut(s) 21, 72, 139
CviAII CATG 4 cut(s) 9, 18, 156, 981
CviQI GTAC 3 cut(s) 21, 72, 139
DdeI CTNAG 1 cut(s) 522
DpnI GATC 6 cut(s) 107, 166, 310, 351, 474, 778
DpnII GATC 6 cut(s) 105, 164, 308, 349, 472, 776
Eam1104I CTCTTC 1 cut(s) 600
EarI CTCTTC 1 cut(s) 600
Ecl136II GAGCTC 2 cut(s) 562, 928
Eco130I CCWWGG 2 cut(s) 402, 608
Eco24I GRGCYC 4 cut(s) 402, 564, 882, 930
Eco31I GGTCTC 1 cut(s) 190
Eco53kI GAGCTC 2 cut(s) 562, 928
Eco57I CTGAAG 3 cut(s) 246, 475, 636
Eco88I CYCGRG 4 cut(s) 316, 357, 646, 881
EcoICRI GAGCTC 2 cut(s) 562, 928
EcoRI GAATTC 1 cut(s) 483
EcoRII CCWGG 1 cut(s) 427
EcoT14I CCWWGG 2 cut(s) 402, 608
EcoT22I ATGCAT 2 cut(s) 14, 790
EcoT38I GRGCYC 4 cut(s) 402, 564, 882, 930
ErhI CCWWGG 2 cut(s) 402, 608
Esp3I CGTCTC 1 cut(s) 832
FaeI CATG 4 cut(s) 12, 21, 159, 984
FalI AAGNNNNNCTT 2 cut(s) 184, 216
FaqI GGGAC 1 cut(s) 290
FatI CATG 4 cut(s) 8, 17, 155, 980
FauNDI CATATG 1 cut(s) 334
Fnu4HI GCNGC 2 cut(s) 249, 340
FokI GGATG 4 cut(s) 401, 407, 424, 664
FriOI GRGCYC 4 cut(s) 402, 564, 882, 930
Fsp4HI GCNGC 2 cut(s) 249, 340
FspBI CTAG 5 cut(s) 663, 810, 843, 908, 921
GlaI GCGC 1 cut(s) 136
GluI GCNGC 2 cut(s) 249, 340
GsuI CTGGAG 1 cut(s) 741
HapII CCGG 5 cut(s) 32, 132, 586, 882, 931
HhaI GCGC 1 cut(s) 137
Hin1II CATG 4 cut(s) 12, 21, 159, 984
Hin6I GCGC 1 cut(s) 135
HinP1I GCGC 1 cut(s) 135
HindIII AAGCTT 1 cut(s) 819
HinfI GANTC 8 cut(s) 314, 321, 355, 362, 579, 635, 656, 854
HpaII CCGG 5 cut(s) 32, 132, 586, 882, 931
HphI GGTGA 3 cut(s) 274, 359, 548
Hpy166II GTNNAC 2 cut(s) 6, 436
Hpy188I TCNGA 6 cut(s) 226, 313, 354, 616, 751, 859
Hpy188III TCNNGA 8 cut(s) 181, 318, 359, 574, 720, 792, 810, 950
Hpy8I GTNNAC 2 cut(s) 6, 436
Hpy99I CGWCG 1 cut(s) 44
HpyAV CCTTC 1 cut(s) 221
HpyCH4IV ACGT 1 cut(s) 368
HpyCH4V TGCA 8 cut(s) 12, 150, 159, 251, 305, 436, 770, 788
HpyF10VI GCNNNNNNNGC 2 cut(s) 156, 523
HpyF3I CTNAG 1 cut(s) 522
HpySE526I ACGT 1 cut(s) 368
Hsp92II CATG 4 cut(s) 12, 21, 159, 984
HspAI GCGC 1 cut(s) 135
Kzo9I GATC 6 cut(s) 105, 164, 308, 349, 472, 776
LguI GCTCTTC 1 cut(s) 600
LmnI GCTCC 4 cut(s) 559, 722, 925, 933
Lsp1109I GCAGC 1 cut(s) 235
LweI GCATC 2 cut(s) 775, 797
MaeI CTAG 5 cut(s) 663, 810, 843, 908, 921
MaeII ACGT 1 cut(s) 368
MalI GATC 6 cut(s) 107, 166, 310, 351, 474, 778
MboI GATC 6 cut(s) 105, 164, 308, 349, 472, 776
MboII GAAGA 5 cut(s) 47, 587, 629, 988, 1001
MflI RGATCY 1 cut(s) 776
MhlI GDGCHC 5 cut(s) 402, 438, 564, 882, 930
MluCI AATT 3 cut(s) 125, 483, 541
MlyI GAGTC 4 cut(s) 308, 349, 650, 863
MmeI TCCRAC 2 cut(s) 377, 707
Mph1103I ATGCAT 2 cut(s) 14, 790
MroXI GAANNNNTTC 1 cut(s) 231
MseI TTAA 3 cut(s) 477, 507, 1024
MslI CAYNNNNRTG 1 cut(s) 446
MspI CCGG 5 cut(s) 32, 132, 586, 882, 931
MspR9I CCNGG 3 cut(s) 429, 882, 883
Mva1269I GAATGC 1 cut(s) 976
MvaI CCWGG 1 cut(s) 429
MvnI CGCG 2 cut(s) 137, 793
MwoI GCNNNNNNNGC 2 cut(s) 156, 523
NciI CCSGG 2 cut(s) 882, 883
NdeI CATATG 1 cut(s) 334
NdeII GATC 6 cut(s) 105, 164, 308, 349, 472, 776
NheI GCTAGC 1 cut(s) 907
NlaIII CATG 4 cut(s) 12, 21, 159, 984
NlaIV GGNNCC 4 cut(s) 64, 234, 681, 704
NmeAIII GCCGAG 1 cut(s) 521
NruI TCGCGA 1 cut(s) 793
NsiI ATGCAT 2 cut(s) 14, 790
NspI RCATGY 2 cut(s) 12, 21
OliI CACNNNNGTG 1 cut(s) 446
PaeR7I CTCGAG 3 cut(s) 316, 357, 646
PaqCI CACCTGC 2 cut(s) 277, 761
PciSI GCTCTTC 1 cut(s) 600
PcsI WCGNNNNNNNCGW 1 cut(s) 493
PctI GAATGC 1 cut(s) 976
PdmI GAANNNNTTC 1 cut(s) 231
PfeI GAWTC 4 cut(s) 321, 362, 579, 635
PflMI CCANNNNNTGG 2 cut(s) 408, 752
PkrI GCNGC 2 cut(s) 250, 341
PleI GAGTC 4 cut(s) 308, 349, 650, 862
PpsI GAGTC 4 cut(s) 308, 349, 650, 862
Psp124BI GAGCTC 2 cut(s) 564, 930
Psp6I CCWGG 1 cut(s) 427
PspGI CCWGG 1 cut(s) 427
PspN4I GGNNCC 4 cut(s) 64, 234, 681, 704
PspXI VCTCGAGB 1 cut(s) 646
PsuI RGATCY 1 cut(s) 776
RruI TCGCGA 1 cut(s) 793
RsaI GTAC 3 cut(s) 22, 73, 140
RsaNI GTAC 3 cut(s) 21, 72, 139
RseI CAYNNNNRTG 1 cut(s) 446
SacI GAGCTC 2 cut(s) 564, 930
SapI GCTCTTC 1 cut(s) 600
SaqAI TTAA 3 cut(s) 477, 507, 1024
SatI GCNGC 2 cut(s) 249, 340
Sau3AI GATC 6 cut(s) 105, 164, 308, 349, 472, 776
SchI GAGTC 4 cut(s) 308, 349, 650, 863
ScrFI CCNGG 3 cut(s) 429, 882, 883
SduI GDGCHC 5 cut(s) 402, 438, 564, 882, 930
SfaNI GCATC 2 cut(s) 775, 797
Sfr274I CTCGAG 3 cut(s) 316, 357, 646
SlaI CTCGAG 3 cut(s) 316, 357, 646
SmaI CCCGGG 1 cut(s) 883
SmiMI CAYNNNNRTG 1 cut(s) 446
SmlI CTYRAG 4 cut(s) 256, 316, 357, 646
SmoI CTYRAG 4 cut(s) 256, 316, 357, 646
Sse9I AATT 3 cut(s) 125, 483, 541
SsiI CCGC 4 cut(s) 339, 342, 550, 732
SspMI CTAG 5 cut(s) 663, 810, 843, 908, 921
SstI GAGCTC 2 cut(s) 564, 930
StyD4I CCNGG 3 cut(s) 427, 880, 881
StyI CCWWGG 2 cut(s) 402, 608
TaiI ACGT 1 cut(s) 371
TaqI TCGA 6 cut(s) 317, 328, 358, 423, 647, 901
TasI AATT 3 cut(s) 125, 483, 541
TatI WGTACW 1 cut(s) 71
TauI GCSGC 1 cut(s) 342
TfiI GAWTC 4 cut(s) 321, 362, 579, 635
Tru1I TTAA 3 cut(s) 477, 507, 1024
Tru9I TTAA 3 cut(s) 477, 507, 1024
TseI GCWGC 1 cut(s) 248
TspDTI ATGAA 1 cut(s) 831
TspGWI ACGGA 2 cut(s) 57, 814
TspMI CCCGGG 1 cut(s) 881
Van91I CCANNNNNTGG 2 cut(s) 408, 752
VneI GTGCAC 1 cut(s) 434
XapI RAATTY 2 cut(s) 125, 483
XbaI TCTAGA 1 cut(s) 809
XceI RCATGY 2 cut(s) 12, 21
XcmI CCANNNNNNNNNTGG 1 cut(s) 409
XhoI CTCGAG 3 cut(s) 316, 357, 646
XmaI CCCGGG 1 cut(s) 881
XmnI GAANNNNTTC 1 cut(s) 231
XspI CTAG 5 cut(s) 663, 810, 843, 908, 921
Zsp2I ATGCAT 2 cut(s) 14, 790
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.