Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003843

Physical Location & Seq

Genomic Coordinates Reverse (-)

11625616 .. 11630745

Gene Structure 5130 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G32240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGGAGCTGTTTCCTGCTCAGCCCGATTTATCCTTACAAATAAGTCCACCAAACAGTAAACCATCATCGACATGGCAGAGAAGAAGATCAACAACAGATCAAGAAGATCATGAAGAACTCGATTTAGGGTTTTGGAGAAGAGCTCTTGATTCAAGAACATCTTCTCTCGTCTCTAATTCCACCTCAAAAACAATCAATCATCCATTCCAAGACCTCTCGCTCTCTAACATCTCTCATCATCAACAACAACAACAACATCATCATCCACAACTTCTCCCTAATTGCAACAGCTCTAACATCTTGACCTCTTTCCAATTTCCGACACAGCAGCAACAACAACACTTACAAGGGTTTCTTGCTCACGACCTTAATACTCACTTAAGACCAATAAGAGGAATACCACTTTACCACAACCCTCCTCCACATCATCATCCTCACCGTCCGCCACCGCCATGTTTCCCTTTCGACCCGTCGTCTCTAATACCCTCTTCCTCCACTTCCTCGCCGGCTCTAACCGGAAACAACAATAGCTTTAATACTAGTAGCGTTAGTAACCCTAATTACCACAATCATCATCACCAGACTCTAAACAGAGCCAGATTCATGCCAAGATTCCCAGCTAAACGAAGCATGAGAGCTCCTAGGATGCGATGGACCACCACTCTTCATGCCCGGTTCGTTCACGCCGTTGAATTACTCGGTGGCCATGAAAGAGCAACACCTAAATCAGTTCTTGAGCTCATGGATGTCAAAGATCTAACCTTGGCTCATGTTAAGTCCCATTTACAGATGTACAGAACAGTGAAGACAACCGACAAAGCAGCAGCTTCGTCAGGACAATCTGATGTCTATGAAAATGGATCATCAGGAGATAATAACTCAGACGACTGGATGTTCGATATGAATAGAAAATCGAGAGATAGCGAGGAATTGACGAATCCTCTAGAGAAATCAAATGGTCTATGGACCAATTCTTCCGGAGAAGCACGTTTGCATGGGAAGTTAATCGATAATGTTGCAGAAATTATGCTACCTTCTGAGAAGGAACTAGATGGAAAGTGCTCAAGTTATGAGAGAATATCATCAGAAGAGATGAGCTCATCAAGCATCTCGGGAACAAGCCCTTTCAAGCCAAATCTTGAGTTTACTCTGGGTCGATCTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009791 GO:0009798 GO:0009889 GO:0009908 GO:0009943 GO:0009944 GO:0009955 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

388

Amino Acids

43.84

Weight (kDa)

7.45

Isoelectric Point (pI)

60.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	215 - 266	2.7e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003843)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32240 AT1G32240 AT1G32240
fragaria_vesca	FvH4_5g22990 FvH4_5g22990 FvH4_5g22990 FvH4_5g22990 FvH4_5g22990 FvH4_5g22990 FvH4_5g22990 FvH4_5g22990
malus_domestica	MD06G1026200.v1.1 MD16G1279800.v1.1
prunus_persica	Prupe.5G028400_v2.0.a1 Prupe.5G028400_v2.0.a1 Prupe.5G028400_v2.0.a1 Prupe.5G028400_v2.0.a1 Prupe.5G028400_v2.0.a1 Prupe.5G028400_v2.0.a1
pyrus_communis	pycom06g02130 pycom16g25010
rosa_chinensis	RchiOBHm_Chr7g0211731
rosa_laevigata	RLG00000002974
rosa_multiflora	Rmu_sc0001875.1_g000015
rosa_roxburghii	Rroxscaffold_3G00247530
rosa_rugosa	Rorug07G0127500 Rorug07G0127600 Rorug07G0127700 Rorug07G0127800
rosa_samantha	Rh7AG260700 Rh7BG253900 Rh7CG277200 Rh7DG267300
rosa_wichuraiana	Rw7G022220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	977
AciI	CCGC	2 cut(s)	443, 449
AclWI	GGATC	1 cut(s)	868
AcoI	YGGCCR	1 cut(s)	703
AfaI	GTAC	1 cut(s)	794
AfiI	CCNNNNNNNGG	1 cut(s)	392
AflII	CTTAAG	1 cut(s)	379
AgsI	TTSAA	3 cut(s)	153, 692, 1129
AhdI	GACNNNNNGTC	1 cut(s)	472
AhlI	ACTAGT	1 cut(s)	539
AluBI	AGCT	9 cut(s)	7, 143, 291, 531, 620, 638, 739, 827, 1098
AluI	AGCT	9 cut(s)	7, 143, 291, 531, 620, 638, 739, 827, 1098
Alw21I	GWGCWC	5 cut(s)	145, 640, 741, 1064, 1100
Alw26I	GTCTC	2 cut(s)	175, 480
AlwI	GGATC	1 cut(s)	868
Ama87I	CYCGRG	1 cut(s)	1111
Aor13HI	TCCGGA	1 cut(s)	977
AoxI	GGCC	1 cut(s)	703
ApeKI	GCWGC	3 cut(s)	328, 821, 824
ArsI	GACNNNNNNTTYG	2 cut(s)	878, 910
Asp700I	GAANNNNTTC	1 cut(s)	160
AspA2I	CCTAGG	1 cut(s)	641
AspS9I	GGNCC	2 cut(s)	654, 966
AsuC2I	CCSGG	1 cut(s)	673
AsuHPI	GGTGA	2 cut(s)	428, 569
AvaI	CYCGRG	1 cut(s)	1111
AvaII	GGWCC	2 cut(s)	654, 966
AvrII	CCTAGG	1 cut(s)	641
BalI	TGGCCA	1 cut(s)	705
BanII	GRGCYC	4 cut(s)	145, 640, 741, 1100
BbsI	GAAGAC	1 cut(s)	812
Bbv12I	GWGCWC	5 cut(s)	145, 640, 741, 1064, 1100
BbvI	GCAGC	3 cut(s)	340, 833, 836
BccI	CCATC	3 cut(s)	70, 645, 1046
BceAI	ACGGC	1 cut(s)	671
BcgI	CGANNNNNNTGC	4 cut(s)	810, 844, 998, 1032
BcnI	CCSGG	1 cut(s)	673
BcoDI	GTCTC	2 cut(s)	175, 480
BcuI	ACTAGT	1 cut(s)	539
BfaI	CTAG	4 cut(s)	540, 642, 944, 1049
BfrI	CTTAAG	1 cut(s)	379
BglII	AGATCT	1 cut(s)	754
BisI	GCNGC	3 cut(s)	329, 822, 825
BlnI	CCTAGG	1 cut(s)	641
BlpI	GCTNAGC	1 cut(s)	18
BlsI	GCNGC	3 cut(s)	330, 823, 826
Bme1390I	CCNGG	1 cut(s)	673
Bme18I	GGWCC	2 cut(s)	654, 966
BmeRI	GACNNNNNGTC	1 cut(s)	472
BmeT110I	CYCGRG	1 cut(s)	1111
BmgT120I	GGNCC	2 cut(s)	654, 966
BmrFI	CCNGG	1 cut(s)	673
BmsI	GCATC	2 cut(s)	636, 1116
BpiI	GAAGAC	1 cut(s)	812
BplI	GAGNNNNNCTC	4 cut(s)	127, 159, 1082, 1114
Bpu1102I	GCTNAGC	1 cut(s)	18
BpuEI	CTTGAG	3 cut(s)	755, 1048, 1160
BpuMI	CCSGG	1 cut(s)	673
Bsa29I	ATCGAT	1 cut(s)	1008
BsaJI	CCNNGG	2 cut(s)	641, 762
BsaWI	WCCGGW	2 cut(s)	515, 977
BsaXI	ACNNNNNCTCC	2 cut(s)	258, 288
Bsc4I	CCNNNNNNNGG	1 cut(s)	392
Bse118I	RCCGGY	1 cut(s)	505
Bse1I	ACTGG	1 cut(s)	893
BseAI	TCCGGA	1 cut(s)	977
BseCI	ATCGAT	1 cut(s)	1008
BseDI	CCNNGG	2 cut(s)	641, 762
BseGI	GGATG	6 cut(s)	199, 262, 430, 651, 751, 897
BseLI	CCNNNNNNNGG	1 cut(s)	392
BseMII	CTCAG	3 cut(s)	32, 894, 1029
BseNI	ACTGG	1 cut(s)	893
BseRI	GAGGAG	1 cut(s)	408
BseXI	GCAGC	3 cut(s)	340, 833, 836
BseYI	CCCAGC	1 cut(s)	616
BshFI	GGCC	1 cut(s)	705
BshVI	ATCGAT	1 cut(s)	1008
BsiHKAI	GWGCWC	5 cut(s)	145, 640, 741, 1064, 1100
BsiHKCI	CYCGRG	1 cut(s)	1111
BsiSI	CCGG	4 cut(s)	506, 516, 673, 978
BslFI	GGGAC	1 cut(s)	763
BslI	CCNNNNNNNGG	1 cut(s)	392
BsmAI	GTCTC	2 cut(s)	175, 480
BsmBI	CGTCTC	2 cut(s)	175, 480
BsmFI	GGGAC	1 cut(s)	763
BsnI	GGCC	1 cut(s)	705
BsoBI	CYCGRG	1 cut(s)	1111
Bsp1286I	GDGCHC	5 cut(s)	145, 640, 741, 1064, 1100
Bsp13I	TCCGGA	1 cut(s)	977
Bsp1407I	TGTACA	1 cut(s)	792
Bsp143I	GATC	6 cut(s)	86, 97, 106, 754, 860, 1157
Bsp1720I	GCTNAGC	1 cut(s)	18
BspACI	CCGC	2 cut(s)	443, 449
BspANI	GGCC	1 cut(s)	705
BspCNI	CTCAG	3 cut(s)	31, 893, 1030
BspDI	ATCGAT	1 cut(s)	1008
BspEI	TCCGGA	1 cut(s)	977
BspHI	TCATGA	1 cut(s)	109
BspPI	GGATC	1 cut(s)	868
BspQI	GCTCTTC	1 cut(s)	133
BspTI	CTTAAG	1 cut(s)	379
BsrFI	RCCGGY	1 cut(s)	505
BsrGI	TGTACA	1 cut(s)	792
BsrI	ACTGG	1 cut(s)	893
BssAI	RCCGGY	1 cut(s)	505
BssECI	CCNNGG	2 cut(s)	641, 762
BssMI	GATC	6 cut(s)	86, 97, 106, 754, 860, 1157
BssT1I	CCWWGG	2 cut(s)	641, 762
Bst4CI	ACNGT	3 cut(s)	56, 440, 802
Bst6I	CTCTTC	4 cut(s)	133, 493, 669, 1083
BstAFI	CTTAAG	1 cut(s)	379
BstAUI	TGTACA	1 cut(s)	792
BstC8I	GCNNGC	1 cut(s)	507
BstDEI	CTNAG	3 cut(s)	18, 880, 1038
BstF5I	GGATG	6 cut(s)	199, 262, 430, 651, 751, 897
BstKTI	GATC	6 cut(s)	89, 100, 109, 757, 863, 1160
BstMAI	GTCTC	2 cut(s)	175, 480
BstMBI	GATC	6 cut(s)	86, 97, 106, 754, 860, 1157
BstMWI	GCNNNNNNNGC	1 cut(s)	1104
BstSCI	CCNGG	1 cut(s)	671
BstV1I	GCAGC	3 cut(s)	340, 833, 836
BstV2I	GAAGAC	1 cut(s)	812
BstX2I	RGATCY	1 cut(s)	754
BstYI	RGATCY	1 cut(s)	754
Bsu15I	ATCGAT	1 cut(s)	1008
BsuRI	GGCC	1 cut(s)	705
BsuTUI	ATCGAT	1 cut(s)	1008
BtgZI	GCGATG	1 cut(s)	664
BtsCI	GGATG	6 cut(s)	199, 262, 430, 651, 751, 897
BtsIMutI	CAGTG	1 cut(s)	807
Cac8I	GCNNGC	1 cut(s)	507
CciI	TCATGA	1 cut(s)	109
Cfr10I	RCCGGY	1 cut(s)	505
Cfr13I	GGNCC	2 cut(s)	654, 966
ClaI	ATCGAT	1 cut(s)	1008
Csp6I	GTAC	1 cut(s)	793
CviQI	GTAC	1 cut(s)	793
DdeI	CTNAG	3 cut(s)	18, 880, 1038
DpnI	GATC	6 cut(s)	88, 99, 108, 756, 862, 1159
DpnII	GATC	6 cut(s)	86, 97, 106, 754, 860, 1157
DriI	GACNNNNNGTC	1 cut(s)	472
EaeI	YGGCCR	1 cut(s)	703
Eam1104I	CTCTTC	4 cut(s)	133, 493, 669, 1083
Eam1105I	GACNNNNNGTC	1 cut(s)	472
EarI	CTCTTC	4 cut(s)	133, 493, 669, 1083
EciI	GGCGGA	1 cut(s)	432
Ecl136II	GAGCTC	4 cut(s)	143, 638, 739, 1098
Eco130I	CCWWGG	2 cut(s)	641, 762
Eco24I	GRGCYC	4 cut(s)	145, 640, 741, 1100
Eco47I	GGWCC	2 cut(s)	654, 966
Eco53kI	GAGCTC	4 cut(s)	143, 638, 739, 1098
Eco88I	CYCGRG	1 cut(s)	1111
EcoICRI	GAGCTC	4 cut(s)	143, 638, 739, 1098
EcoT14I	CCWWGG	2 cut(s)	641, 762
EcoT38I	GRGCYC	4 cut(s)	145, 640, 741, 1100
ErhI	CCWWGG	2 cut(s)	641, 762
Esp3I	CGTCTC	2 cut(s)	175, 480
FalI	AAGNNNNNCTT	4 cut(s)	145, 177, 339, 371
FaqI	GGGAC	1 cut(s)	763
Fnu4HI	GCNGC	3 cut(s)	329, 822, 825
FokI	GGATG	6 cut(s)	186, 249, 417, 658, 758, 904
FriOI	GRGCYC	4 cut(s)	145, 640, 741, 1100
Fsp4HI	GCNGC	3 cut(s)	329, 822, 825
FspBI	CTAG	4 cut(s)	540, 642, 944, 1049
GluI	GCNGC	3 cut(s)	329, 822, 825
GsaI	CCCAGC	1 cut(s)	620
HaeIII	GGCC	1 cut(s)	705
HapII	CCGG	4 cut(s)	506, 516, 673, 978
HinfI	GANTC	5 cut(s)	149, 583, 600, 612, 937
HpaII	CCGG	4 cut(s)	506, 516, 673, 978
HphI	GGTGA	2 cut(s)	428, 569
Hpy166II	GTNNAC	4 cut(s)	47, 59, 682, 1146
Hpy188I	TCNGA	5 cut(s)	321, 844, 883, 1039, 1087
Hpy8I	GTNNAC	4 cut(s)	47, 59, 682, 1146
Hpy99I	CGWCG	1 cut(s)	475
HpyAV	CCTTC	2 cut(s)	1036, 1044
HpyCH4III	ACNGT	3 cut(s)	56, 440, 802
HpyCH4IV	ACGT	1 cut(s)	988
HpyCH4V	TGCA	3 cut(s)	285, 994, 1019
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1104
HpyF3I	CTNAG	3 cut(s)	18, 880, 1038
HpySE526I	ACGT	1 cut(s)	988
Kpn2I	TCCGGA	1 cut(s)	977
KroI	GCCGGC	1 cut(s)	505
KroNI	GCCGGC	1 cut(s)	507
Kzo9I	GATC	6 cut(s)	86, 97, 106, 754, 860, 1157
LguI	GCTCTTC	1 cut(s)	133
LmnI	GCTCC	2 cut(s)	4, 643
Lsp1109I	GCAGC	3 cut(s)	340, 833, 836
LweI	GCATC	2 cut(s)	636, 1116
MaeI	CTAG	4 cut(s)	540, 642, 944, 1049
MaeII	ACGT	1 cut(s)	988
MaeIII	GTNAC	1 cut(s)	551
MalI	GATC	6 cut(s)	88, 99, 108, 756, 862, 1159
MboI	GATC	6 cut(s)	86, 97, 106, 754, 860, 1157
MflI	RGATCY	1 cut(s)	754
MhlI	GDGCHC	5 cut(s)	145, 640, 741, 1064, 1100
MlsI	TGGCCA	1 cut(s)	705
MluCI	AATT	8 cut(s)	175, 280, 314, 559, 692, 929, 970, 1023
MluNI	TGGCCA	1 cut(s)	705
MlyI	GAGTC	1 cut(s)	577
MmeI	TCCRAC	1 cut(s)	344
Mox20I	TGGCCA	1 cut(s)	705
MroI	TCCGGA	1 cut(s)	977
MroNI	GCCGGC	1 cut(s)	505
MroXI	GAANNNNTTC	1 cut(s)	160
MscI	TGGCCA	1 cut(s)	705
MseI	TTAA	5 cut(s)	369, 380, 534, 774, 1004
MslI	CAYNNNNRTG	2 cut(s)	70, 451
Msp20I	TGGCCA	1 cut(s)	705
MspCI	CTTAAG	1 cut(s)	379
MspI	CCGG	4 cut(s)	506, 516, 673, 978
MspR9I	CCNGG	1 cut(s)	673
MwoI	GCNNNNNNNGC	1 cut(s)	1104
NaeI	GCCGGC	1 cut(s)	507
NciI	CCSGG	1 cut(s)	673
NdeII	GATC	6 cut(s)	86, 97, 106, 754, 860, 1157
NgoMIV	GCCGGC	1 cut(s)	505
PagI	TCATGA	1 cut(s)	109
PciSI	GCTCTTC	1 cut(s)	133
PcsI	WCGNNNNNNNCGW	1 cut(s)	684
PdiI	GCCGGC	1 cut(s)	507
PdmI	GAANNNNTTC	1 cut(s)	160
PfeI	GAWTC	4 cut(s)	149, 600, 612, 937
PkrI	GCNGC	3 cut(s)	330, 823, 826
PleI	GAGTC	1 cut(s)	577
PpsI	GAGTC	1 cut(s)	577
Psp124BI	GAGCTC	4 cut(s)	145, 640, 741, 1100
PspFI	CCCAGC	1 cut(s)	616
PspPI	GGNCC	2 cut(s)	654, 966
PsuI	RGATCY	1 cut(s)	754
RsaI	GTAC	1 cut(s)	794
RsaNI	GTAC	1 cut(s)	793
RseI	CAYNNNNRTG	2 cut(s)	70, 451
SacI	GAGCTC	4 cut(s)	145, 640, 741, 1100
SapI	GCTCTTC	1 cut(s)	133
SaqAI	TTAA	5 cut(s)	369, 380, 534, 774, 1004
SatI	GCNGC	3 cut(s)	329, 822, 825
Sau3AI	GATC	6 cut(s)	86, 97, 106, 754, 860, 1157
Sau96I	GGNCC	2 cut(s)	654, 966
SchI	GAGTC	1 cut(s)	577
ScrFI	CCNGG	1 cut(s)	673
SduI	GDGCHC	5 cut(s)	145, 640, 741, 1064, 1100
SfaNI	GCATC	2 cut(s)	636, 1116
SinI	GGWCC	2 cut(s)	654, 966
SmiMI	CAYNNNNRTG	2 cut(s)	70, 451
SmlI	CTYRAG	4 cut(s)	379, 734, 1063, 1139
SmoI	CTYRAG	4 cut(s)	379, 734, 1063, 1139
SpeI	ACTAGT	1 cut(s)	539
Sse9I	AATT	8 cut(s)	175, 280, 314, 559, 692, 929, 970, 1023
SsiI	CCGC	2 cut(s)	443, 449
SspMI	CTAG	4 cut(s)	540, 642, 944, 1049
SstI	GAGCTC	4 cut(s)	145, 640, 741, 1100
StyD4I	CCNGG	1 cut(s)	671
StyI	CCWWGG	2 cut(s)	641, 762
TaaI	ACNGT	3 cut(s)	56, 440, 802
TaiI	ACGT	1 cut(s)	991
TaqI	TCGA	7 cut(s)	68, 120, 465, 897, 914, 1008, 1156
TasI	AATT	8 cut(s)	175, 280, 314, 559, 692, 929, 970, 1023
TatI	WGTACW	1 cut(s)	792
TfiI	GAWTC	4 cut(s)	149, 600, 612, 937
Tru1I	TTAA	5 cut(s)	369, 380, 534, 774, 1004
Tru9I	TTAA	5 cut(s)	369, 380, 534, 774, 1004
TscAI	CASTG	1 cut(s)	807
TseI	GCWGC	3 cut(s)	328, 821, 824
TspDTI	ATGAA	6 cut(s)	126, 592, 656, 723, 867, 917
TspRI	CASTG	1 cut(s)	807
Vha464I	CTTAAG	1 cut(s)	379
VpaK11BI	GGWCC	2 cut(s)	654, 966
XbaI	TCTAGA	1 cut(s)	943
XcmI	CCANNNNNNNNNTGG	1 cut(s)	69
XmaJI	CCTAGG	1 cut(s)	641
XmnI	GAANNNNTTC	1 cut(s)	160
XspI	CTAG	4 cut(s)	540, 642, 944, 1049

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.