Prupe.5G028400_v2.0.a1
MYB Family

transcription factor

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Reverse (-)
3317720 .. 3322970
5251 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G028400.2

Sequence Viewer

Length: 1233 bp
ATGGAGCTGTTCCCTGCACAGCCAGACTTATCTCTTCAAATTAGCCCTCCAAACAGCAAACCCACATCATCAAGTAGTTGGAGGAGAAGTAGTAGAGAAGAGCAAGAGGAGGTGGATTTGGGGTTCTGGAGGAGAGCCTTGGACTCCAGAACCTCCTTCTCCTCCTCAATGGCAAAACCCGATACCGGTTTCGAGCTCGAGGTCTCAAATCCAAGGGTTTATGCTCATGGTCTCCATCATCACCACCACCAGCATCATCAGTCCAATATTAGCTCTAACCATATAATCCACCACCTCAACCAAAATGGTAATGTTTTCCAGGGTTTTGAGCAAAACCAGTTCTCAGTCCCCCAAGTAAATCATCACCCACTATTAAATGTTCATGACCAACAATTACAATTGCAATCACAGTCACAATCAGATCATCTTGGGTTCTTGAGGCCCATTAGGGGAATTCCAGTGTACCAAAACCCTCCTCCCCCTAATTTGTTCCCATTTTCTTCCCAAAAGCCTTTGGACAGTAATTCCTGTACTTCCACCTCCACAATTACAAGCTCTTCAAGCCCACTATTTCAGGCTCAAGGGGGTCTTCTCCGATCCAGGTTCTTGTCCCGCTTTCCGGCAAAGCGCAGCATGAGAGCCCCTCGGATGCGCTGGACTACCACTCTTCACGCTCGCTTTGTTCACGCCGTTGAGCTTTTGGGTGGCCATGAAAGGGCTACACCAAAGTCAGTTCTTGAGCTTATGGATGTCAAAGATCTCACCTTGGCACATGTCAAATCTCATTTACAGATGTATCGGACGGTGAAAACCACCGATAAAGCAGCGCCCTCTTCAGGACAATCTGATGTGTACGAAAATGCTTCATCTGGGGACACCACTGAAGACATAATGCTTGACCTTCAGAACCCAAGAAGGTCTTGTGATCAGCTCTCACCAGCTCAGCAGCAGGGATCAAGATCCACTCCTCAGGTTCAAGATAATAAAGAATACTATGGCCTCTGGAGCAACTCTTCAAGCAGAGAAGCTTGGTTGCATGCAAACACAAAGGATTCTTCTACGCCTGCAAATATACCATCTCTTGATGATCAGGAGAAGGAAGACATGATGGATCCAAAAGGCTTGAGTTATGAGAGAATATCAGATGTAAGCTCCTCAACAACAAACATTTCTGCAGGGACAAGAAGCCCCAGGAAGCCCAATTTGGAGTTCACTTTGGGCAGGCCACTTTGA

Protein Analysis

411

Amino Acids

46.07

Weight (kDa)

7.39

Isoelectric Point (pI)

70.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 613
AclWI GGATC 5 cut(s) 591, 954, 961, 1106, 1119
AcoI YGGCCR 1 cut(s) 706
AcsI RAATTY 1 cut(s) 453
AcuI CTGAAG 3 cut(s) 819, 887, 903
AfaI GTAC 3 cut(s) 464, 532, 854
AfiI CCNNNNNNNGG 5 cut(s) 185, 449, 619, 715, 836
AflIII ACRYGT 1 cut(s) 772
AgeI ACCGGT 1 cut(s) 185
AgsI TTSAA 4 cut(s) 38, 561, 977, 1017
AjnI CCWGG 3 cut(s) 318, 599, 1190
AjuI GAANNNNNNNTTGG 4 cut(s) 1187, 1193, 1219, 1225
AloI GAACNNNNNNTCC 2 cut(s) 107, 139
Alw21I GWGCWC 1 cut(s) 198
Alw26I GTCTC 2 cut(s) 208, 236
AlwI GGATC 5 cut(s) 591, 954, 961, 1106, 1119
Ama87I CYCGRG 1 cut(s) 197
AoxI GGCC 4 cut(s) 440, 706, 997, 1223
ApeKI GCWGC 3 cut(s) 630, 824, 946
ApoI RAATTY 1 cut(s) 453
AsiGI ACCGGT 1 cut(s) 185
AspLEI GCGC 3 cut(s) 630, 654, 829
AspS9I GGNCC 1 cut(s) 441
AsuHPI GGTGA 5 cut(s) 233, 356, 754, 817, 927
AvaI CYCGRG 1 cut(s) 197
AxyI CCTNAGG 1 cut(s) 969
BaeI ACNNNNGTAYC 2 cut(s) 779, 812
BalI TGGCCA 1 cut(s) 708
BamHI GGATCC 1 cut(s) 1111
BanII GRGCYC 2 cut(s) 198, 643
BbsI GAAGAC 3 cut(s) 581, 891, 1107
Bbv12I GWGCWC 1 cut(s) 198
BbvI GCAGC 3 cut(s) 642, 836, 958
BccI CCATC 3 cut(s) 243, 1084, 1102
BceAI ACGGC 1 cut(s) 674
BciT130I CCWGG 3 cut(s) 320, 601, 1192
BclI TGATCA 2 cut(s) 925, 1087
BcoDI GTCTC 2 cut(s) 208, 236
BfmI CTRYAG 1 cut(s) 1173
BfoI RGCGCY 1 cut(s) 830
BglII AGATCT 1 cut(s) 757
BisI GCNGC 3 cut(s) 631, 825, 947
BlpI GCTNAGC 1 cut(s) 942
BlsI GCNGC 3 cut(s) 632, 826, 948
Bme1390I CCNGG 3 cut(s) 320, 601, 1192
BmeT110I CYCGRG 1 cut(s) 197
BmgT120I GGNCC 1 cut(s) 441
BmiI GGNNCC 1 cut(s) 1113
BmrFI CCNGG 3 cut(s) 320, 601, 1192
BmsI GCATC 2 cut(s) 262, 639
BpiI GAAGAC 3 cut(s) 581, 891, 1107
BplI GAGNNNNNCTC 2 cut(s) 628, 660
BpmI CTGGAG 3 cut(s) 130, 148, 1024
Bpu1102I GCTNAGC 1 cut(s) 942
BpuEI CTTGAG 4 cut(s) 457, 564, 758, 1144
BsaBI GATNNNNATC 1 cut(s) 958
BsaI GGTCTC 2 cut(s) 208, 236
BsaJI CCNNGG 6 cut(s) 138, 212, 319, 644, 765, 1190
BsaWI WCCGGW 1 cut(s) 185
BsaXI ACNNNNNCTCC 4 cut(s) 73, 76, 103, 106
Bsc4I CCNNNNNNNGG 5 cut(s) 185, 449, 619, 715, 836
Bse118I RCCGGY 1 cut(s) 185
Bse1I ACTGG 2 cut(s) 337, 458
Bse21I CCTNAGG 1 cut(s) 969
Bse8I GATNNNNATC 1 cut(s) 958
BseBI CCWGG 3 cut(s) 320, 601, 1192
BseDI CCNNGG 6 cut(s) 138, 212, 319, 644, 765, 1190
BseGI GGATG 2 cut(s) 654, 754
BseJI GATNNNNATC 1 cut(s) 958
BseLI CCNNNNNNNGG 5 cut(s) 185, 449, 619, 715, 836
BseMII CTCAG 3 cut(s) 357, 956, 983
BseNI ACTGG 2 cut(s) 337, 458
BseRI GAGGAG 8 cut(s) 97, 122, 145, 151, 154, 465, 957, 1144
BseXI GCAGC 3 cut(s) 642, 836, 958
BshFI GGCC 4 cut(s) 442, 708, 999, 1225
BshTI ACCGGT 1 cut(s) 185
BsiHKAI GWGCWC 1 cut(s) 198
BsiHKCI CYCGRG 1 cut(s) 197
BsiSI CCGG 2 cut(s) 186, 620
BslFI GGGAC 4 cut(s) 332, 595, 887, 1192
BslI CCNNNNNNNGG 5 cut(s) 185, 449, 619, 715, 836
BsmAI GTCTC 2 cut(s) 208, 236
BsmFI GGGAC 4 cut(s) 332, 595, 887, 1192
BsnI GGCC 4 cut(s) 442, 708, 999, 1225
Bso31I GGTCTC 2 cut(s) 208, 236
BsoBI CYCGRG 1 cut(s) 197
Bsp1286I GDGCHC 2 cut(s) 198, 643
Bsp143I GATC 8 cut(s) 421, 596, 757, 925, 953, 959, 1087, 1111
Bsp1720I GCTNAGC 1 cut(s) 942
BspACI CCGC 1 cut(s) 613
BspANI GGCC 4 cut(s) 442, 708, 999, 1225
BspCNI CTCAG 3 cut(s) 356, 955, 982
BspHI TCATGA 1 cut(s) 382
BspLI GGNNCC 1 cut(s) 1113
BspMAI CTGCAG 1 cut(s) 1177
BspPI GGATC 5 cut(s) 591, 954, 961, 1106, 1119
BspQI GCTCTTC 2 cut(s) 93, 562
BspTNI GGTCTC 2 cut(s) 208, 236
BsrFI RCCGGY 1 cut(s) 185
BsrI ACTGG 2 cut(s) 337, 458
BssAI RCCGGY 1 cut(s) 185
BssECI CCNNGG 6 cut(s) 138, 212, 319, 644, 765, 1190
BssMI GATC 8 cut(s) 421, 596, 757, 925, 953, 959, 1087, 1111
BssT1I CCWWGG 3 cut(s) 138, 212, 765
Bst2UI CCWGG 3 cut(s) 320, 601, 1192
Bst4CI ACNGT 3 cut(s) 411, 521, 805
Bst6I CTCTTC 6 cut(s) 39, 93, 562, 672, 838, 1018
BstC8I GCNNGC 4 cut(s) 676, 1038, 1065, 1223
BstDEI CTNAG 3 cut(s) 343, 942, 969
BstF5I GGATG 2 cut(s) 654, 754
BstH2I RGCGCY 1 cut(s) 830
BstHHI GCGC 3 cut(s) 630, 654, 829
BstKTI GATC 8 cut(s) 424, 599, 760, 928, 956, 962, 1090, 1114
BstMAI GTCTC 2 cut(s) 208, 236
BstMBI GATC 8 cut(s) 421, 596, 757, 925, 953, 959, 1087, 1111
BstMWI GCNNNNNNNGC 2 cut(s) 561, 1005
BstNI CCWGG 3 cut(s) 320, 601, 1192
BstNSI RCATGY 2 cut(s) 776, 1040
BstSCI CCNGG 3 cut(s) 318, 599, 1190
BstSFI CTRYAG 1 cut(s) 1173
BstV1I GCAGC 3 cut(s) 642, 836, 958
BstV2I GAAGAC 3 cut(s) 581, 891, 1107
BstX2I RGATCY 3 cut(s) 757, 959, 1111
BstYI RGATCY 3 cut(s) 757, 959, 1111
Bsu36I CCTNAGG 1 cut(s) 969
BsuRI GGCC 4 cut(s) 442, 708, 999, 1225
BtsCI GGATG 2 cut(s) 654, 754
BtsIMutI CAGTG 2 cut(s) 465, 879
Cac8I GCNNGC 4 cut(s) 676, 1038, 1065, 1223
CciI TCATGA 1 cut(s) 382
CfoI GCGC 3 cut(s) 630, 654, 829
Cfr10I RCCGGY 1 cut(s) 185
Cfr13I GGNCC 1 cut(s) 441
Csp6I GTAC 3 cut(s) 463, 531, 853
CspAI ACCGGT 1 cut(s) 185
CviAII CATG 7 cut(s) 227, 383, 634, 710, 773, 1037, 1105
CviQI GTAC 3 cut(s) 463, 531, 853
DdeI CTNAG 3 cut(s) 343, 942, 969
DpnI GATC 8 cut(s) 423, 598, 759, 927, 955, 961, 1089, 1113
DpnII GATC 8 cut(s) 421, 596, 757, 925, 953, 959, 1087, 1111
EaeI YGGCCR 1 cut(s) 706
Eam1104I CTCTTC 6 cut(s) 39, 93, 562, 672, 838, 1018
EarI CTCTTC 6 cut(s) 39, 93, 562, 672, 838, 1018
Ecl136II GAGCTC 1 cut(s) 196
Eco130I CCWWGG 3 cut(s) 138, 212, 765
Eco24I GRGCYC 2 cut(s) 198, 643
Eco31I GGTCTC 2 cut(s) 208, 236
Eco53kI GAGCTC 1 cut(s) 196
Eco57I CTGAAG 3 cut(s) 819, 887, 903
Eco81I CCTNAGG 1 cut(s) 969
Eco88I CYCGRG 1 cut(s) 197
EcoICRI GAGCTC 1 cut(s) 196
EcoRI GAATTC 1 cut(s) 453
EcoRII CCWGG 3 cut(s) 318, 599, 1190
EcoT14I CCWWGG 3 cut(s) 138, 212, 765
EcoT38I GRGCYC 2 cut(s) 198, 643
ErhI CCWWGG 3 cut(s) 138, 212, 765
FaeI CATG 7 cut(s) 230, 386, 637, 713, 776, 1040, 1108
FalI AAGNNNNNCTT 4 cut(s) 573, 605, 904, 936
FaqI GGGAC 4 cut(s) 332, 595, 887, 1192
FatI CATG 7 cut(s) 226, 382, 633, 709, 772, 1036, 1104
FauI CCCGC 1 cut(s) 620
FbaI TGATCA 2 cut(s) 925, 1087
Fnu4HI GCNGC 3 cut(s) 631, 825, 947
FokI GGATG 2 cut(s) 661, 761
FriOI GRGCYC 2 cut(s) 198, 643
Fsp4HI GCNGC 3 cut(s) 631, 825, 947
GlaI GCGC 3 cut(s) 629, 653, 828
GluI GCNGC 3 cut(s) 631, 825, 947
GsuI CTGGAG 3 cut(s) 130, 148, 1024
HaeII RGCGCY 1 cut(s) 830
HaeIII GGCC 4 cut(s) 442, 708, 999, 1225
HapII CCGG 2 cut(s) 186, 620
HhaI GCGC 3 cut(s) 630, 654, 829
Hin1II CATG 7 cut(s) 230, 386, 637, 713, 776, 1040, 1108
Hin6I GCGC 3 cut(s) 628, 652, 827
HinP1I GCGC 3 cut(s) 628, 652, 827
HindIII AAGCTT 1 cut(s) 1026
HinfI GANTC 2 cut(s) 143, 1052
HpaII CCGG 2 cut(s) 186, 620
HphI GGTGA 5 cut(s) 233, 356, 754, 817, 927
Hpy166II GTNNAC 4 cut(s) 463, 685, 853, 1212
Hpy188I TCNGA 7 cut(s) 421, 596, 648, 801, 847, 906, 1144
Hpy8I GTNNAC 4 cut(s) 463, 685, 853, 1212
HpyAV CCTTC 4 cut(s) 166, 909, 911, 1090
HpyCH4III ACNGT 3 cut(s) 411, 521, 805
HpyCH4V TGCA 6 cut(s) 17, 403, 1036, 1040, 1067, 1175
HpyF10VI GCNNNNNNNGC 2 cut(s) 561, 1005
HpyF3I CTNAG 3 cut(s) 343, 942, 969
Hsp92II CATG 7 cut(s) 230, 386, 637, 713, 776, 1040, 1108
HspAI GCGC 3 cut(s) 628, 652, 827
Ksp22I TGATCA 2 cut(s) 925, 1087
Kzo9I GATC 8 cut(s) 421, 596, 757, 925, 953, 959, 1087, 1111
LguI GCTCTTC 2 cut(s) 93, 562
LmnI GCTCC 3 cut(s) 4, 1005, 1157
Lsp1109I GCAGC 3 cut(s) 642, 836, 958
LweI GCATC 2 cut(s) 262, 639
MaeIII GTNAC 1 cut(s) 411
MalI GATC 8 cut(s) 423, 598, 759, 927, 955, 961, 1089, 1113
MboI GATC 8 cut(s) 421, 596, 757, 925, 953, 959, 1087, 1111
MfeI CAATTG 1 cut(s) 398
MflI RGATCY 3 cut(s) 757, 959, 1111
MhlI GDGCHC 2 cut(s) 198, 643
MlsI TGGCCA 1 cut(s) 708
MluCI AATT 8 cut(s) 39, 392, 398, 453, 484, 523, 546, 1201
MluNI TGGCCA 1 cut(s) 708
MlyI GAGTC 1 cut(s) 137
MmeI TCCRAC 1 cut(s) 59
Mox20I TGGCCA 1 cut(s) 708
MscI TGGCCA 1 cut(s) 708
MseI TTAA 1 cut(s) 374
Msp20I TGGCCA 1 cut(s) 708
MspI CCGG 2 cut(s) 186, 620
MspR9I CCNGG 3 cut(s) 320, 601, 1192
MunI CAATTG 1 cut(s) 398
MvaI CCWGG 3 cut(s) 320, 601, 1192
MwoI GCNNNNNNNGC 2 cut(s) 561, 1005
NdeII GATC 8 cut(s) 421, 596, 757, 925, 953, 959, 1087, 1111
NlaIII CATG 7 cut(s) 230, 386, 637, 713, 776, 1040, 1108
NlaIV GGNNCC 1 cut(s) 1113
NmuCI GTSAC 1 cut(s) 411
NspI RCATGY 2 cut(s) 776, 1040
PaeI GCATGC 1 cut(s) 1040
PaeR7I CTCGAG 1 cut(s) 197
PagI TCATGA 1 cut(s) 382
PciI ACATGT 1 cut(s) 772
PciSI GCTCTTC 2 cut(s) 93, 562
PfeI GAWTC 1 cut(s) 1052
PinAI ACCGGT 1 cut(s) 185
PkrI GCNGC 3 cut(s) 632, 826, 948
PleI GAGTC 1 cut(s) 137
PpsI GAGTC 1 cut(s) 137
PscI ACATGT 1 cut(s) 772
Psp124BI GAGCTC 1 cut(s) 198
Psp6I CCWGG 3 cut(s) 318, 599, 1190
PspGI CCWGG 3 cut(s) 318, 599, 1190
PspN4I GGNNCC 1 cut(s) 1113
PspPI GGNCC 1 cut(s) 441
PspXI VCTCGAGB 1 cut(s) 197
PstI CTGCAG 1 cut(s) 1177
PsuI RGATCY 3 cut(s) 757, 959, 1111
RsaI GTAC 3 cut(s) 464, 532, 854
RsaNI GTAC 3 cut(s) 463, 531, 853
SacI GAGCTC 1 cut(s) 198
SapI GCTCTTC 2 cut(s) 93, 562
SaqAI TTAA 1 cut(s) 374
SatI GCNGC 3 cut(s) 631, 825, 947
Sau3AI GATC 8 cut(s) 421, 596, 757, 925, 953, 959, 1087, 1111
Sau96I GGNCC 1 cut(s) 441
SchI GAGTC 1 cut(s) 137
ScrFI CCNGG 3 cut(s) 320, 601, 1192
SduI GDGCHC 2 cut(s) 198, 643
SfaNI GCATC 2 cut(s) 262, 639
SfcI CTRYAG 1 cut(s) 1173
Sfr274I CTCGAG 1 cut(s) 197
SlaI CTCGAG 1 cut(s) 197
SmlI CTYRAG 5 cut(s) 197, 436, 579, 737, 1123
SmoI CTYRAG 5 cut(s) 197, 436, 579, 737, 1123
SphI GCATGC 1 cut(s) 1040
Sse9I AATT 8 cut(s) 39, 392, 398, 453, 484, 523, 546, 1201
SsiI CCGC 1 cut(s) 613
SspI AATATT 1 cut(s) 268
SstI GAGCTC 1 cut(s) 198
StyD4I CCNGG 3 cut(s) 318, 599, 1190
StyI CCWWGG 3 cut(s) 138, 212, 765
TaaI ACNGT 3 cut(s) 411, 521, 805
TaqI TCGA 2 cut(s) 192, 198
TasI AATT 8 cut(s) 39, 392, 398, 453, 484, 523, 546, 1201
TatI WGTACW 1 cut(s) 530
TfiI GAWTC 1 cut(s) 1052
Tru1I TTAA 1 cut(s) 374
Tru9I TTAA 1 cut(s) 374
TscAI CASTG 2 cut(s) 465, 886
TseFI GTSAC 1 cut(s) 411
TseI GCWGC 3 cut(s) 630, 824, 946
Tsp45I GTSAC 1 cut(s) 411
TspDTI ATGAA 3 cut(s) 371, 726, 855
TspRI CASTG 2 cut(s) 465, 886
XapI RAATTY 1 cut(s) 453
XceI RCATGY 2 cut(s) 776, 1040
XhoI CTCGAG 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.