Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0003843

Physical Location & Seq

Genomic Coordinates Forward (+)

10052785 .. 10055473

Gene Structure 2689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0127500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1950 bp

ATGCGATTCCCAATCCCAAAACTTCGTTGTTCAACATGGGTTTTCCTCATAATCTTTGTCTTCTTCTTCTTCTCCACTTCCAAATCAGATCCTCGAATCTACGAAGCCGGTCAGTTCTGCGGAAATTCCACCCACACCTCTGACAGCAACTTCATTCCCAACTTCATAGACGCCATGGAATCCATCTCCAACAGTGTCAACGAGAAACAATGGGGAGAATACAGCGTCACCTCACCGGCTCCAAAACTATACGCCTTTGCGCAATGCCATTCCGATCTCTCCCCAAAAGACTGCTCTACTTGTTTCGCAATTTCGAGAACCAAGCTCCCCAAATGCCTCCCTTCAACCTCAGCTCGCATCTACCTCGACGGTTGCTTCCTCGCTTACGATGACCATGACTTTTCGGGCCAGGCCCTCGACGAAAATCACAGGAATGTGAAATGTGGGAGTCCAGTCGATTTTTCGAAAGATAATTACATGAAGGAGGGGTTTCACCTCAAGGTAAGGGATGTGATTGGTAACTTGACGAAGAAGGCTGAGGGGAATGAAGGGTTTGCTGTGGTGGGGCAGAGAGGTGGAGTTGAAAGTGTTTATGCATTGGCCCAGTGCTGGAGGACCATCAGCGATAAAGGGTGTAGAGATTGTTTGGAAGAAGCTGGGAAGATTCTCGGGGGATGCTTGCCTGGGAAGCAAGGTAGGGCTATGCTGGCAGGGTGTTATATGAGGTACTCTACCGAGAGATTTTATGACATGGAAGAAGAAGAAGCAAATGGAAATGCTGATCTGTGGCATGTTCTAGCTGTCATTATAGCTGGAATGGTCATTTCTGTTTTGGCTCTCTTTGGGTTTATAATGGCCTACCGGAAATTACAAAAAATGACAGGAGTGGACAAATACTCAATTGGGATATCAACTTCTCCACACAAGAACAGCTTGAATTTCAAGTACGAAATGCTGGAAAAGGCCACCGATTACTTCAATGCCTCGAGGACACTTGGCCAAGGCGGAGCTGGTTCCGTATTCAAGGGAACTCTTCCGGATGGGAGCAATGTAGCAGTTAAAAGACTCTTCTTGAACACAAGGCAATGGGTGGATAACTTCTTCAATGAAGTAAACCTCATAAGTGGTATACGACACAAGAACCTTGTTAGGCTTTTGGGTTGCAGCATTGAAGGTCCAGAAAGCCTTCTAGTCTATGAATATGTACCCAACAAAAGCCTTGATCAAATCCTTTTTGGTAGGGGCACTGAGCAAGTTTTAAGTTGGCAACAGAGATTTAACATCATTTCTGGAATTGCTGAGGGGCTTGTGTATCTCCATGAAAGTTGCGGCGAGAAAATTATTCACAGGGACATAAAATCCAGCAACATTCTCCTTGATGAGAATCTTACTCCAAAGATTGCTGATTTTGGACTTGCGCGCTGTGTTGGTCCTGATAAGTCTCATCTTAGCACAGGAATTGCAGGCACATTAGGTTATATGGCTCCTGAATATCTTGTTCGAGGACAACTAACCGATAAGGCTGATGTTTATGCCTTGGTGTGCTTGTTCTCGAGATTGTATGTGGCAGGAAGAACCATGTTTTCATCGAGGGTTTATAAGCACTATAGGGCCAATACTATTACTGAATCTGTTGATGCCATGTTGAAAGGTGAGTACTCCAAAAGAGAGGCGTCAAATGTACTTCAAATTGGGCTTCTGTGCACGCAAGCTTCTCTTGCACTGAGACCATCCATGTCCGAGGTAGTTCACATGCTGACCGATAAAGAATGTAGCATTCCTTCACCGAAACAGCCTCCATTCTTGAATGCCAGCATACTTAATTCGGATTCCTCTAGATCTACATTGAGCTATTTGTCGAAAGAGGGAGGAGAGTCTCTAAAGTCCGCCGATCTGGCCAGCTTGGAATCAAATTGTATTCAAACAATGGAAGCATCTGAACCAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009791 GO:0009798 GO:0009889 GO:0009908 GO:0009943 GO:0009944 GO:0009955 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

649

Amino Acids

71.97

Weight (kDa)

7.14

Isoelectric Point (pI)

36.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	40 - 131	1.8e-13	Salt stress response/antifungal
Stress-antifung	PF01657	157 - 245	5.2e-13	Salt stress response/antifungal
Pkinase	PF00069	327 - 584	5.4e-43	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	328 - 586	1.6e-40	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003843)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32240 AT1G32240 AT1G32240
fragaria_vesca	FvH4_5g22990 FvH4_5g22990 FvH4_5g22990 FvH4_5g22990 FvH4_5g22990 FvH4_5g22990 FvH4_5g22990 FvH4_5g22990
malus_domestica	MD06G1026200.v1.1 MD16G1279800.v1.1
prunus_persica	Prupe.5G028400_v2.0.a1 Prupe.5G028400_v2.0.a1 Prupe.5G028400_v2.0.a1 Prupe.5G028400_v2.0.a1 Prupe.5G028400_v2.0.a1 Prupe.5G028400_v2.0.a1
pyrus_communis	pycom06g02130 pycom16g25010
rosa_chinensis	RchiOBHm_Chr7g0211731
rosa_laevigata	RLG00000002974
rosa_multiflora	Rmu_sc0001875.1_g000015
rosa_roxburghii	Rroxscaffold_3G00247530
rosa_rugosa	Rorug07G0127500 Rorug07G0127600 Rorug07G0127700 Rorug07G0127800
rosa_samantha	Rh7AG260700 Rh7BG253900 Rh7CG277200 Rh7DG267300
rosa_wichuraiana	Rw7G022220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	851, 1599
AbsI	CCTCGAGG	1 cut(s)	985
Acc16I	TGCGCA	1 cut(s)	261
AccI	GTMKAC	1 cut(s)	1129
AccII	CGCG	1 cut(s)	1420
AccIII	TCCGGA	1 cut(s)	1036
AciI	CCGC	4 cut(s)	120, 1005, 1329, 1887
AclWI	GGATC	1 cut(s)	83
AcoI	YGGCCR	2 cut(s)	997, 1896
AcsI	RAATTY	2 cut(s)	124, 937
AcyI	GRCGYC	2 cut(s)	171, 1673
AfaI	GTAC	5 cut(s)	728, 947, 1206, 1658, 1683
AfiI	CCNNNNNNNGG	1 cut(s)	609
AjnI	CCWGG	2 cut(s)	408, 682
Alw21I	GWGCWC	1 cut(s)	1706
Alw26I	GTCTC	3 cut(s)	1446, 1720, 1881
Alw44I	GTGCAC	1 cut(s)	1702
AlwI	GGATC	1 cut(s)	83
Ama87I	CYCGRG	3 cut(s)	668, 985, 1552
Aor13HI	TCCGGA	1 cut(s)	1036
AoxI	GGCC	8 cut(s)	406, 411, 600, 855, 963, 997, 1611, 1896
ApaLI	GTGCAC	1 cut(s)	1702
ApeKI	GCWGC	1 cut(s)	1164
ApoI	RAATTY	2 cut(s)	124, 937
Asp700I	GAANNNNTTC	1 cut(s)	1185
AspLEI	GCGC	3 cut(s)	262, 1420, 1422
AspS9I	GGNCC	7 cut(s)	406, 412, 601, 615, 1175, 1430, 1611
AsuHPI	GGTGA	5 cut(s)	220, 225, 485, 1664, 1776
AsuII	TTCGAA	1 cut(s)	464
AvaI	CYCGRG	3 cut(s)	668, 985, 1552
AvaII	GGWCC	3 cut(s)	615, 1175, 1430
BaeGI	GKGCMC	2 cut(s)	1247, 1706
BalI	TGGCCA	2 cut(s)	999, 1898
BarI	GAAGNNNNNNTAC	2 cut(s)	1765, 1797
BbsI	GAAGAC	1 cut(s)	52
Bbv12I	GWGCWC	1 cut(s)	1706
BbvCI	CCTCAGC	3 cut(s)	349, 537, 1299
BbvI	GCAGC	1 cut(s)	1176
BccI	CCATC	4 cut(s)	191, 626, 1034, 1738
BcgI	CGANNNNNNTGC	2 cut(s)	346, 380
BciT130I	CCWGG	2 cut(s)	410, 684
BclI	TGATCA	1 cut(s)	1222
BcoDI	GTCTC	3 cut(s)	1446, 1720, 1881
BfaI	CTAG	3 cut(s)	797, 1190, 1836
BfmI	CTRYAG	1 cut(s)	1606
BglI	GCCNNNNNGGC	1 cut(s)	1895
BglII	AGATCT	1 cut(s)	1838
BisI	GCNGC	2 cut(s)	1165, 1330
BlsI	GCNGC	2 cut(s)	1166, 1331
BmcAI	AGTACT	1 cut(s)	1658
Bme1390I	CCNGG	2 cut(s)	410, 684
Bme18I	GGWCC	3 cut(s)	615, 1175, 1430
BmeT110I	CYCGRG	3 cut(s)	668, 985, 1552
BmgT120I	GGNCC	7 cut(s)	406, 412, 601, 615, 1175, 1430, 1611
BmiI	GGNNCC	3 cut(s)	240, 1015, 1485
BmrFI	CCNGG	2 cut(s)	410, 684
BmrI	ACTGGG	1 cut(s)	598
BmsI	GCATC	4 cut(s)	366, 665, 1627, 1943
BmuI	ACTGGG	1 cut(s)	598
BpiI	GAAGAC	1 cut(s)	52
BpmI	CTGGAG	1 cut(s)	631
Bpu10I	CCTNAGC	3 cut(s)	349, 537, 1299
Bpu14I	TTCGAA	1 cut(s)	464
BpuEI	CTTGAG	1 cut(s)	482
BsaBI	GATNNNNATC	1 cut(s)	1383
BsaHI	GRCGYC	2 cut(s)	171, 1673
BsaI	GGTCTC	1 cut(s)	1720
BsaJI	CCNNGG	6 cut(s)	174, 683, 1000, 1536, 1740, 1943
BsaWI	WCCGGW	2 cut(s)	861, 1036
Bsc4I	CCNNNNNNNGG	1 cut(s)	609
Bse118I	RCCGGY	2 cut(s)	107, 235
Bse1I	ACTGG	2 cut(s)	452, 604
Bse3DI	GCAATG	3 cut(s)	269, 1054, 1091
Bse8I	GATNNNNATC	1 cut(s)	1383
BseAI	TCCGGA	1 cut(s)	1036
BseBI	CCWGG	2 cut(s)	410, 684
BseDI	CCNNGG	6 cut(s)	174, 683, 1000, 1536, 1740, 1943
BseGI	GGATG	4 cut(s)	514, 680, 1045, 1730
BseJI	GATNNNNATC	1 cut(s)	1383
BseLI	CCNNNNNNNGG	1 cut(s)	609
BseMI	GCAATG	3 cut(s)	269, 1054, 1091
BseMII	CTCAG	5 cut(s)	363, 528, 1239, 1290, 1715
BseNI	ACTGG	2 cut(s)	452, 604
BsePI	GCGCGC	1 cut(s)	1418
BseRI	GAGGAG	1 cut(s)	1884
BseSI	GKGCMC	2 cut(s)	1247, 1706
BseXI	GCAGC	1 cut(s)	1176
BseYI	CCCAGC	1 cut(s)	656
Bsh1236I	CGCG	1 cut(s)	1420
BshFI	GGCC	8 cut(s)	408, 413, 602, 857, 965, 999, 1613, 1898
BsiHKAI	GWGCWC	1 cut(s)	1706
BsiHKCI	CYCGRG	3 cut(s)	668, 985, 1552
BsiSI	CCGG	4 cut(s)	108, 236, 862, 1037
BslFI	GGGAC	1 cut(s)	1364
BslI	CCNNNNNNNGG	1 cut(s)	609
BsmAI	GTCTC	3 cut(s)	1446, 1720, 1881
BsmFI	GGGAC	1 cut(s)	1364
BsmI	GAATGC	2 cut(s)	1776, 1813
BsnI	GGCC	8 cut(s)	408, 413, 602, 857, 965, 999, 1613, 1898
Bso31I	GGTCTC	1 cut(s)	1720
BsoBI	CYCGRG	3 cut(s)	668, 985, 1552
Bsp119I	TTCGAA	1 cut(s)	464
Bsp1286I	GDGCHC	2 cut(s)	1247, 1706
Bsp13I	TCCGGA	1 cut(s)	1036
Bsp143I	GATC	6 cut(s)	88, 274, 781, 1222, 1838, 1891
Bsp19I	CCATGG	1 cut(s)	174
BspACI	CCGC	4 cut(s)	120, 1005, 1329, 1887
BspANI	GGCC	8 cut(s)	408, 413, 602, 857, 965, 999, 1613, 1898
BspCNI	CTCAG	5 cut(s)	362, 529, 1240, 1291, 1716
BspEI	TCCGGA	1 cut(s)	1036
BspFNI	CGCG	1 cut(s)	1420
BspLI	GGNNCC	3 cut(s)	240, 1015, 1485
BspPI	GGATC	1 cut(s)	83
BspT104I	TTCGAA	1 cut(s)	464
BspTNI	GGTCTC	1 cut(s)	1720
BsrDI	GCAATG	3 cut(s)	269, 1054, 1091
BsrFI	RCCGGY	2 cut(s)	107, 235
BsrI	ACTGG	2 cut(s)	452, 604
BssAI	RCCGGY	2 cut(s)	107, 235
BssECI	CCNNGG	6 cut(s)	174, 683, 1000, 1536, 1740, 1943
BssHII	GCGCGC	1 cut(s)	1418
BssMI	GATC	6 cut(s)	88, 274, 781, 1222, 1838, 1891
BssNAI	GTATAC	1 cut(s)	1130
BssNI	GRCGYC	2 cut(s)	171, 1673
BssT1I	CCWWGG	4 cut(s)	174, 1000, 1536, 1943
Bst1107I	GTATAC	1 cut(s)	1130
Bst2UI	CCWGG	2 cut(s)	410, 684
Bst4CI	ACNGT	2 cut(s)	194, 371
Bst6I	CTCTTC	2 cut(s)	1038, 1073
BstACI	GRCGYC	2 cut(s)	171, 1673
BstBI	TTCGAA	1 cut(s)	464
BstC8I	GCNNGC	9 cut(s)	355, 680, 708, 1420, 1465, 1706, 1710, 1813, 1900
BstDEI	CTNAG	6 cut(s)	349, 537, 1248, 1299, 1448, 1724
BstDSI	CCRYGG	1 cut(s)	174
BstF5I	GGATG	4 cut(s)	514, 680, 1045, 1730
BstFNI	CGCG	1 cut(s)	1420
BstHHI	GCGC	3 cut(s)	262, 1420, 1422
BstKTI	GATC	6 cut(s)	91, 277, 784, 1225, 1841, 1894
BstMAI	GTCTC	3 cut(s)	1446, 1720, 1881
BstMBI	GATC	6 cut(s)	88, 274, 781, 1222, 1838, 1891
BstMWI	GCNNNNNNNGC	4 cut(s)	688, 707, 1718, 1895
BstNI	CCWGG	2 cut(s)	410, 684
BstNSI	RCATGY	2 cut(s)	794, 1756
BstSCI	CCNGG	2 cut(s)	408, 682
BstSFI	CTRYAG	1 cut(s)	1606
BstSLI	GKGCMC	2 cut(s)	1247, 1706
BstUI	CGCG	1 cut(s)	1420
BstV1I	GCAGC	1 cut(s)	1176
BstV2I	GAAGAC	1 cut(s)	52
BstX2I	RGATCY	2 cut(s)	88, 1838
BstYI	RGATCY	2 cut(s)	88, 1838
BstZ17I	GTATAC	1 cut(s)	1130
BsuRI	GGCC	8 cut(s)	408, 413, 602, 857, 965, 999, 1613, 1898
BtgI	CCRYGG	1 cut(s)	174
BtsCI	GGATG	4 cut(s)	514, 680, 1045, 1730
BtsIMutI	CAGTG	4 cut(s)	199, 611, 1245, 1721
Cac8I	GCNNGC	9 cut(s)	355, 680, 708, 1420, 1465, 1706, 1710, 1813, 1900
CfoI	GCGC	3 cut(s)	262, 1420, 1422
Cfr10I	RCCGGY	2 cut(s)	107, 235
Cfr13I	GGNCC	7 cut(s)	406, 412, 601, 615, 1175, 1430, 1611
CseI	GACGC	3 cut(s)	179, 214, 1662
Csp6I	GTAC	5 cut(s)	727, 946, 1205, 1657, 1682
CviQI	GTAC	5 cut(s)	727, 946, 1205, 1657, 1682
DdeI	CTNAG	6 cut(s)	349, 537, 1248, 1299, 1448, 1724
DpnI	GATC	6 cut(s)	90, 276, 783, 1224, 1840, 1893
DpnII	GATC	6 cut(s)	88, 274, 781, 1222, 1838, 1891
EaeI	YGGCCR	2 cut(s)	997, 1896
Eam1104I	CTCTTC	2 cut(s)	1038, 1073
EarI	CTCTTC	2 cut(s)	1038, 1073
EciI	GGCGGA	2 cut(s)	1020, 1876
Eco130I	CCWWGG	4 cut(s)	174, 1000, 1536, 1943
Eco31I	GGTCTC	1 cut(s)	1720
Eco32I	GATATC	1 cut(s)	909
Eco47I	GGWCC	3 cut(s)	615, 1175, 1430
Eco88I	CYCGRG	3 cut(s)	668, 985, 1552
EcoO109I	RGGNCCY	1 cut(s)	412
EcoRII	CCWGG	2 cut(s)	408, 682
EcoRV	GATATC	1 cut(s)	909
EcoT14I	CCWWGG	4 cut(s)	174, 1000, 1536, 1943
EcoT22I	ATGCAT	1 cut(s)	598
ErhI	CCWWGG	4 cut(s)	174, 1000, 1536, 1943
FalI	AAGNNNNNCTT	4 cut(s)	917, 949, 1701, 1733
FaqI	GGGAC	1 cut(s)	1364
FbaI	TGATCA	1 cut(s)	1222
FblI	GTMKAC	1 cut(s)	1129
Fnu4HI	GCNGC	2 cut(s)	1165, 1330
FokI	GGATG	4 cut(s)	521, 687, 1052, 1717
Fsp4HI	GCNGC	2 cut(s)	1165, 1330
FspBI	CTAG	3 cut(s)	797, 1190, 1836
FspI	TGCGCA	1 cut(s)	261
GlaI	GCGC	3 cut(s)	261, 1419, 1421
GluI	GCNGC	2 cut(s)	1165, 1330
GsaI	CCCAGC	1 cut(s)	660
GsuI	CTGGAG	1 cut(s)	631
HaeIII	GGCC	8 cut(s)	408, 413, 602, 857, 965, 999, 1613, 1898
HapII	CCGG	4 cut(s)	108, 236, 862, 1037
HgaI	GACGC	3 cut(s)	179, 214, 1662
HhaI	GCGC	3 cut(s)	262, 1420, 1422
Hin1I	GRCGYC	2 cut(s)	171, 1673
Hin6I	GCGC	3 cut(s)	260, 1418, 1420
HinP1I	GCGC	3 cut(s)	260, 1418, 1420
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HindIII	AAGCTT	1 cut(s)	1710
HpaII	CCGG	4 cut(s)	108, 236, 862, 1037
HphI	GGTGA	5 cut(s)	220, 225, 485, 1664, 1776
Hpy166II	GTNNAC	6 cut(s)	199, 889, 1114, 1130, 1704, 1750
Hpy188I	TCNGA	6 cut(s)	88, 142, 274, 1741, 1828, 1939
Hpy8I	GTNNAC	6 cut(s)	199, 889, 1114, 1130, 1704, 1750
Hpy99I	CGWCG	2 cut(s)	371, 422
HpyAV	CCTTC	7 cut(s)	351, 475, 526, 542, 1166, 1196, 1791
HpyCH4III	ACNGT	2 cut(s)	194, 371
HpyCH4V	TGCA	5 cut(s)	596, 1164, 1463, 1704, 1721
HpyF10VI	GCNNNNNNNGC	4 cut(s)	688, 707, 1718, 1895
HpyF3I	CTNAG	6 cut(s)	349, 537, 1248, 1299, 1448, 1724
Hsp92I	GRCGYC	2 cut(s)	171, 1673
HspAI	GCGC	3 cut(s)	260, 1418, 1420
Kpn2I	TCCGGA	1 cut(s)	1036
Ksp22I	TGATCA	1 cut(s)	1222
Kzo9I	GATC	6 cut(s)	88, 274, 781, 1222, 1838, 1891
LmnI	GCTCC	5 cut(s)	244, 330, 1007, 1044, 1489
Lsp1109I	GCAGC	1 cut(s)	1176
LweI	GCATC	4 cut(s)	366, 665, 1627, 1943
MaeI	CTAG	3 cut(s)	797, 1190, 1836
MaeIII	GTNAC	2 cut(s)	226, 518
MalI	GATC	6 cut(s)	90, 276, 783, 1224, 1840, 1893
MboI	GATC	6 cut(s)	88, 274, 781, 1222, 1838, 1891
MfeI	CAATTG	1 cut(s)	900
MflI	RGATCY	2 cut(s)	88, 1838
MhlI	GDGCHC	2 cut(s)	1247, 1706
MlsI	TGGCCA	2 cut(s)	999, 1898
MluNI	TGGCCA	2 cut(s)	999, 1898
MlyI	GAGTC	3 cut(s)	457, 1059, 1883
MmeI	TCCRAC	1 cut(s)	213
Mox20I	TGGCCA	2 cut(s)	999, 1898
Mph1103I	ATGCAT	1 cut(s)	598
MroI	TCCGGA	1 cut(s)	1036
MroXI	GAANNNNTTC	1 cut(s)	1185
MscI	TGGCCA	2 cut(s)	999, 1898
MseI	TTAA	4 cut(s)	1059, 1259, 1278, 1821
MslI	CAYNNNNRTG	1 cut(s)	432
Msp20I	TGGCCA	2 cut(s)	999, 1898
MspI	CCGG	4 cut(s)	108, 236, 862, 1037
MspR9I	CCNGG	2 cut(s)	410, 684
MunI	CAATTG	1 cut(s)	900
Mva1269I	GAATGC	2 cut(s)	1776, 1813
MvaI	CCWGG	2 cut(s)	410, 684
MvnI	CGCG	1 cut(s)	1420
MwoI	GCNNNNNNNGC	4 cut(s)	688, 707, 1718, 1895
NcoI	CCATGG	1 cut(s)	174
NdeII	GATC	6 cut(s)	88, 274, 781, 1222, 1838, 1891
NlaIV	GGNNCC	3 cut(s)	240, 1015, 1485
NmuCI	GTSAC	1 cut(s)	226
NsbI	TGCGCA	1 cut(s)	261
NsiI	ATGCAT	1 cut(s)	598
NspI	RCATGY	2 cut(s)	794, 1756
NspV	TTCGAA	1 cut(s)	464
PaeR7I	CTCGAG	2 cut(s)	985, 1552
PauI	GCGCGC	1 cut(s)	1418
PctI	GAATGC	2 cut(s)	1776, 1813
PdmI	GAANNNNTTC	1 cut(s)	1185
PfeI	GAWTC	8 cut(s)	6, 96, 179, 664, 1384, 1628, 1829, 1907
PkrI	GCNGC	2 cut(s)	1166, 1331
PleI	GAGTC	3 cut(s)	456, 1059, 1882
PpsI	GAGTC	3 cut(s)	456, 1059, 1882
PsiI	TTATAA	2 cut(s)	851, 1599
Psp6I	CCWGG	2 cut(s)	408, 682
PspFI	CCCAGC	1 cut(s)	656
PspGI	CCWGG	2 cut(s)	408, 682
PspN4I	GGNNCC	3 cut(s)	240, 1015, 1485
PspPI	GGNCC	7 cut(s)	406, 412, 601, 615, 1175, 1430, 1611
PspXI	VCTCGAGB	1 cut(s)	985
PsuI	RGATCY	2 cut(s)	88, 1838
PteI	GCGCGC	1 cut(s)	1418
RsaI	GTAC	5 cut(s)	728, 947, 1206, 1658, 1683
RsaNI	GTAC	5 cut(s)	727, 946, 1205, 1657, 1682
RseI	CAYNNNNRTG	1 cut(s)	432
SaqAI	TTAA	4 cut(s)	1059, 1259, 1278, 1821
SatI	GCNGC	2 cut(s)	1165, 1330
Sau3AI	GATC	6 cut(s)	88, 274, 781, 1222, 1838, 1891
Sau96I	GGNCC	7 cut(s)	406, 412, 601, 615, 1175, 1430, 1611
ScaI	AGTACT	1 cut(s)	1658
SchI	GAGTC	3 cut(s)	457, 1059, 1883
ScrFI	CCNGG	2 cut(s)	410, 684
SduI	GDGCHC	2 cut(s)	1247, 1706
SfaNI	GCATC	4 cut(s)	366, 665, 1627, 1943
SfcI	CTRYAG	1 cut(s)	1606
Sfr274I	CTCGAG	2 cut(s)	985, 1552
SfuI	TTCGAA	1 cut(s)	464
SinI	GGWCC	3 cut(s)	615, 1175, 1430
SlaI	CTCGAG	2 cut(s)	985, 1552
SmiMI	CAYNNNNRTG	1 cut(s)	432
SmlI	CTYRAG	3 cut(s)	497, 985, 1552
SmoI	CTYRAG	3 cut(s)	497, 985, 1552
SsiI	CCGC	4 cut(s)	120, 1005, 1329, 1887
SspMI	CTAG	3 cut(s)	797, 1190, 1836
StyD4I	CCNGG	2 cut(s)	408, 682
StyI	CCWWGG	4 cut(s)	174, 1000, 1536, 1943
TaaI	ACNGT	2 cut(s)	194, 371
TaqII	GACCGA	1 cut(s)	1775
TatI	WGTACW	2 cut(s)	1656, 1681
TauI	GCSGC	1 cut(s)	1332
TfiI	GAWTC	8 cut(s)	6, 96, 179, 664, 1384, 1628, 1829, 1907
Tru1I	TTAA	4 cut(s)	1059, 1259, 1278, 1821
Tru9I	TTAA	4 cut(s)	1059, 1259, 1278, 1821
TscAI	CASTG	4 cut(s)	199, 611, 1252, 1728
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	1 cut(s)	1164
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	8 cut(s)	142, 154, 494, 561, 1122, 1212, 1335, 1575
TspGWI	ACGGA	1 cut(s)	1006
TspRI	CASTG	4 cut(s)	199, 611, 1252, 1728
VneI	GTGCAC	1 cut(s)	1702
VpaK11BI	GGWCC	3 cut(s)	615, 1175, 1430
XapI	RAATTY	2 cut(s)	124, 937
XbaI	TCTAGA	1 cut(s)	1835
XceI	RCATGY	2 cut(s)	794, 1756
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1007
XhoI	CTCGAG	2 cut(s)	985, 1552
XmiI	GTMKAC	1 cut(s)	1129
XmnI	GAANNNNTTC	1 cut(s)	1185
XspI	CTAG	3 cut(s)	797, 1190, 1836
ZrmI	AGTACT	1 cut(s)	1658
Zsp2I	ATGCAT	1 cut(s)	598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.