Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0003843

Physical Location & Seq

Genomic Coordinates Forward (+)

3233291 .. 3238628

Gene Structure 5338 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1026200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGGAGTTGTTCCCTGCACAACCGGACTTATCTCTACAAATTAGCCCTCCAAACAGCAAACCCTCGTCCTCCTCCTCATCAACTAGTTGGAGGAGAAGCAGTCATCAACGTCATCAGGAGGGGGTGGATTTGGGGTTTTGGAGGAGAGCCTTGGACTCCCGAAACTCCACCTCTGACGAGCTTTCGAATACCAATCATCGTCCTCAACACTACAATAATATTACAGCCAGTACTAGCTGTAATGGTGTTAATGGCAATCTTTTCCATCCCTTTCAGTTTCAGCAAAGCCACTACTTTCCCCAAGTTCCCCAAACAGATGTGCAACAAGAATTACAGCAATCGGATGAGCTGCTTGGGTTTTTGAGACCCATTAGAGGAATTCCACTCTACCAAAACCCTCCTCCTCCTCCCCCTAATAATTTCTTCCCATTTTCTTCTTCACAAAAGCCAGTTAATTTCGACAATAATTCCGCAACCTCCACCTCTACAATTACTAGTTCAACCCCACTATTTCAGGCAGCTGCTCATCATCATCAAGGTCATCATGGCGGTCTTCTAAGATCCCGGATTTTCTCTCGCTTTCCGGCCAAACGGAGCATAAGAGCCCCTCGGATGCGTTGGACTACTACTCTTCACGCCCGCTTTGTTCACGCTGTTGAGCTTTTGGGTGGCCATGAAAGGGCTACACCAAAGTCAGTTCTTGAGCTTATGGATGTCAAAGATCTCACATTGGCACATGTTAAATCTCACTTACAGATGTACAGGACGGTGAAAACCACCGATAAAGCAGCGGCCTCTTCAGGACAAAGTGATGTATATGAAAATGCTTCATCTGGGGACACCACTGAAGACATAATGTATGAACTTCAGAACCCAAGAAGGTCTTGTGAGCAGCTACCATCAGCTCAGCACGGATCAAGATCGACTACTGTTCAAGATAATAAGGAGTACTACGGCCTCTGGAGCAATTCTTCAAGAGAAGCTTGGTTGCATGCAAACCCAAAGGATTCTGCACCTGCAAATATTATACCATCTCTCGATGATCAGGAGAGGGAGGACACGAACATGATAGATCCAAAAGGATTAAGTTATGAGAAAATATCAGATGTAAGCAGCTCCTCAACAAACATTTCAGCTGGAGGGACAAGCTTAACCCCTACGAAACCCAATTTGGAGTTCACTTTGGGCAGGTCACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009791 GO:0009798 GO:0009889 GO:0009908 GO:0009943 GO:0009944 GO:0009955 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

400

Amino Acids

44.53

Weight (kDa)

7.36

Isoelectric Point (pI)

63.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	204 - 255	2.9e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003843)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32240 AT1G32240 AT1G32240
fragaria_vesca	FvH4_5g22990 FvH4_5g22990 FvH4_5g22990 FvH4_5g22990 FvH4_5g22990 FvH4_5g22990 FvH4_5g22990 FvH4_5g22990
malus_domestica	MD06G1026200.v1.1 MD16G1279800.v1.1
prunus_persica	Prupe.5G028400_v2.0.a1 Prupe.5G028400_v2.0.a1 Prupe.5G028400_v2.0.a1 Prupe.5G028400_v2.0.a1 Prupe.5G028400_v2.0.a1 Prupe.5G028400_v2.0.a1
pyrus_communis	pycom06g02130 pycom16g25010
rosa_chinensis	RchiOBHm_Chr7g0211731
rosa_laevigata	RLG00000002974
rosa_multiflora	Rmu_sc0001875.1_g000015
rosa_roxburghii	Rroxscaffold_3G00247530
rosa_rugosa	Rorug07G0127500 Rorug07G0127600 Rorug07G0127700 Rorug07G0127800
rosa_samantha	Rh7AG260700 Rh7BG253900 Rh7CG277200 Rh7DG267300
rosa_wichuraiana	Rw7G022220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1024
Acc36I	ACCTGC	2 cut(s)	1024, 1179
AciI	CCGC	4 cut(s)	471, 549, 640, 791
AclWI	GGATC	3 cut(s)	555, 922, 1067
AcoI	YGGCCR	2 cut(s)	585, 670
AcsI	RAATTY	1 cut(s)	378
AcuI	CTGAAG	3 cut(s)	783, 851, 867
AfaI	GTAC	3 cut(s)	232, 761, 950
AfiI	CCNNNNNNNGG	2 cut(s)	374, 679
AflIII	ACRYGT	1 cut(s)	736
AgsI	TTSAA	3 cut(s)	501, 935, 975
AhlI	ACTAGT	2 cut(s)	83, 494
AjuI	GAANNNNNNNTTGG	4 cut(s)	1154, 1160, 1186, 1192
Alw26I	GTCTC	1 cut(s)	358
AlwI	GGATC	3 cut(s)	555, 922, 1067
AoxI	GGCC	4 cut(s)	585, 670, 792, 955
ApeKI	GCWGC	6 cut(s)	349, 518, 521, 788, 892, 1113
ApoI	RAATTY	1 cut(s)	378
AsuC2I	CCSGG	1 cut(s)	565
AsuHPI	GGTGA	1 cut(s)	781
AsuII	TTCGAA	1 cut(s)	185
BalI	TGGCCA	1 cut(s)	672
BanII	GRGCYC	1 cut(s)	607
BbsI	GAAGAC	2 cut(s)	545, 855
BbvI	GCAGC	6 cut(s)	336, 508, 530, 800, 904, 1125
BccI	CCATC	3 cut(s)	273, 907, 1039
BceAI	ACGGC	1 cut(s)	970
BclI	TGATCA	1 cut(s)	1042
BcnI	CCSGG	1 cut(s)	565
BcoDI	GTCTC	1 cut(s)	358
BcuI	ACTAGT	2 cut(s)	83, 494
BfaI	CTAG	3 cut(s)	84, 234, 495
BfuAI	ACCTGC	2 cut(s)	1024, 1179
BglII	AGATCT	1 cut(s)	721
BisI	GCNGC	7 cut(s)	350, 519, 522, 789, 792, 893, 1114
BlpI	GCTNAGC	1 cut(s)	906
BlsI	GCNGC	7 cut(s)	351, 520, 523, 790, 793, 894, 1115
BmcAI	AGTACT	2 cut(s)	232, 950
Bme1390I	CCNGG	1 cut(s)	565
BmrFI	CCNGG	1 cut(s)	565
BmsI	GCATC	1 cut(s)	603
BpiI	GAAGAC	2 cut(s)	545, 855
BpmI	CTGGAG	2 cut(s)	982, 1158
Bpu1102I	GCTNAGC	1 cut(s)	906
Bpu14I	TTCGAA	1 cut(s)	185
BpuEI	CTTGAG	1 cut(s)	722
BpuMI	CCSGG	1 cut(s)	565
BsaBI	GATNNNNATC	1 cut(s)	919
BsaI	GGTCTC	1 cut(s)	358
BsaJI	CCNNGG	2 cut(s)	150, 608
BsaWI	WCCGGW	1 cut(s)	22
BsaXI	ACNNNNNCTCC	2 cut(s)	85, 115
Bsc4I	CCNNNNNNNGG	2 cut(s)	374, 679
Bse1I	ACTGG	2 cut(s)	228, 449
Bse8I	GATNNNNATC	1 cut(s)	919
BseDI	CCNNGG	2 cut(s)	150, 608
BseGI	GGATG	4 cut(s)	265, 349, 618, 718
BseJI	GATNNNNATC	1 cut(s)	919
BseLI	CCNNNNNNNGG	2 cut(s)	374, 679
BseMII	CTCAG	1 cut(s)	920
BseNI	ACTGG	2 cut(s)	228, 449
BseRI	GAGGAG	8 cut(s)	61, 64, 106, 157, 390, 393, 396, 1108
BseXI	GCAGC	6 cut(s)	336, 508, 530, 800, 904, 1125
BsgI	GTGCAG	1 cut(s)	996
BshFI	GGCC	4 cut(s)	587, 672, 794, 957
BsiSI	CCGG	3 cut(s)	23, 565, 584
BslFI	GGGAC	2 cut(s)	851, 1156
BslI	CCNNNNNNNGG	2 cut(s)	374, 679
BsmAI	GTCTC	1 cut(s)	358
BsmFI	GGGAC	2 cut(s)	851, 1156
BsnI	GGCC	4 cut(s)	587, 672, 794, 957
Bso31I	GGTCTC	1 cut(s)	358
Bsp119I	TTCGAA	1 cut(s)	185
Bsp1286I	GDGCHC	1 cut(s)	607
Bsp1407I	TGTACA	1 cut(s)	759
Bsp143I	GATC	6 cut(s)	560, 721, 914, 920, 1042, 1072
Bsp1720I	GCTNAGC	1 cut(s)	906
BspACI	CCGC	4 cut(s)	471, 549, 640, 791
BspANI	GGCC	4 cut(s)	587, 672, 794, 957
BspCNI	CTCAG	1 cut(s)	919
BspMI	ACCTGC	2 cut(s)	1024, 1179
BspPI	GGATC	3 cut(s)	555, 922, 1067
BspT104I	TTCGAA	1 cut(s)	185
BspTNI	GGTCTC	1 cut(s)	358
BsrGI	TGTACA	1 cut(s)	759
BsrI	ACTGG	2 cut(s)	228, 449
BssECI	CCNNGG	2 cut(s)	150, 608
BssMI	GATC	6 cut(s)	560, 721, 914, 920, 1042, 1072
BssT1I	CCWWGG	1 cut(s)	150
Bst4CI	ACNGT	2 cut(s)	769, 931
Bst6I	CTCTTC	2 cut(s)	636, 802
BstAUI	TGTACA	1 cut(s)	759
BstBI	TTCGAA	1 cut(s)	185
BstC8I	GCNNGC	2 cut(s)	640, 993
BstDEI	CTNAG	2 cut(s)	557, 906
BstF5I	GGATG	4 cut(s)	265, 349, 618, 718
BstKTI	GATC	6 cut(s)	563, 724, 917, 923, 1045, 1075
BstMAI	GTCTC	1 cut(s)	358
BstMBI	GATC	6 cut(s)	560, 721, 914, 920, 1042, 1072
BstMWI	GCNNNNNNNGC	1 cut(s)	963
BstNSI	RCATGY	2 cut(s)	740, 995
BstSCI	CCNGG	1 cut(s)	563
BstV1I	GCAGC	6 cut(s)	336, 508, 530, 800, 904, 1125
BstV2I	GAAGAC	2 cut(s)	545, 855
BstX2I	RGATCY	3 cut(s)	560, 721, 1072
BstYI	RGATCY	3 cut(s)	560, 721, 1072
BsuRI	GGCC	4 cut(s)	587, 672, 794, 957
BtsCI	GGATG	4 cut(s)	265, 349, 618, 718
BtsIMutI	CAGTG	1 cut(s)	843
BveI	ACCTGC	2 cut(s)	1024, 1179
Cac8I	GCNNGC	2 cut(s)	640, 993
Csp6I	GTAC	3 cut(s)	231, 760, 949
CviAII	CATG	5 cut(s)	545, 674, 737, 992, 1066
CviQI	GTAC	3 cut(s)	231, 760, 949
DdeI	CTNAG	2 cut(s)	557, 906
DpnI	GATC	6 cut(s)	562, 723, 916, 922, 1044, 1074
DpnII	GATC	6 cut(s)	560, 721, 914, 920, 1042, 1072
EaeI	YGGCCR	2 cut(s)	585, 670
Eam1104I	CTCTTC	2 cut(s)	636, 802
EarI	CTCTTC	2 cut(s)	636, 802
Eco130I	CCWWGG	1 cut(s)	150
Eco24I	GRGCYC	1 cut(s)	607
Eco31I	GGTCTC	1 cut(s)	358
Eco57I	CTGAAG	3 cut(s)	783, 851, 867
EcoRI	GAATTC	1 cut(s)	378
EcoT14I	CCWWGG	1 cut(s)	150
EcoT38I	GRGCYC	1 cut(s)	607
ErhI	CCWWGG	1 cut(s)	150
FaeI	CATG	5 cut(s)	548, 677, 740, 995, 1069
FalI	AAGNNNNNCTT	4 cut(s)	868, 900, 967, 999
FaqI	GGGAC	2 cut(s)	851, 1156
FatI	CATG	5 cut(s)	544, 673, 736, 991, 1065
FauI	CCCGC	1 cut(s)	647
FbaI	TGATCA	1 cut(s)	1042
Fnu4HI	GCNGC	7 cut(s)	350, 519, 522, 789, 792, 893, 1114
FokI	GGATG	4 cut(s)	252, 356, 625, 725
FriOI	GRGCYC	1 cut(s)	607
Fsp4HI	GCNGC	7 cut(s)	350, 519, 522, 789, 792, 893, 1114
FspBI	CTAG	3 cut(s)	84, 234, 495
GluI	GCNGC	7 cut(s)	350, 519, 522, 789, 792, 893, 1114
GsuI	CTGGAG	2 cut(s)	982, 1158
HaeIII	GGCC	4 cut(s)	587, 672, 794, 957
HapII	CCGG	3 cut(s)	23, 565, 584
Hin1II	CATG	5 cut(s)	548, 677, 740, 995, 1069
HindIII	AAGCTT	2 cut(s)	981, 1147
HinfI	GANTC	2 cut(s)	155, 1007
HpaII	CCGG	3 cut(s)	23, 565, 584
HphI	GGTGA	1 cut(s)	781
Hpy166II	GTNNAC	2 cut(s)	649, 1179
Hpy188I	TCNGA	5 cut(s)	175, 343, 612, 870, 1105
Hpy8I	GTNNAC	2 cut(s)	649, 1179
HpyAV	CCTTC	1 cut(s)	873
HpyCH4III	ACNGT	2 cut(s)	769, 931
HpyCH4IV	ACGT	1 cut(s)	109
HpyCH4V	TGCA	6 cut(s)	17, 322, 991, 995, 1013, 1019
HpyF10VI	GCNNNNNNNGC	1 cut(s)	963
HpyF3I	CTNAG	2 cut(s)	557, 906
HpySE526I	ACGT	1 cut(s)	109
Hsp92II	CATG	5 cut(s)	548, 677, 740, 995, 1069
Ksp22I	TGATCA	1 cut(s)	1042
Kzo9I	GATC	6 cut(s)	560, 721, 914, 920, 1042, 1072
LmnI	GCTCC	3 cut(s)	594, 963, 1121
Lsp1109I	GCAGC	6 cut(s)	336, 508, 530, 800, 904, 1125
LweI	GCATC	1 cut(s)	603
MaeI	CTAG	3 cut(s)	84, 234, 495
MaeII	ACGT	1 cut(s)	109
MaeIII	GTNAC	1 cut(s)	1191
MalI	GATC	6 cut(s)	562, 723, 916, 922, 1044, 1074
MboI	GATC	6 cut(s)	560, 721, 914, 920, 1042, 1072
MboII	GAAGA	8 cut(s)	415, 426, 429, 545, 623, 789, 860, 963
MflI	RGATCY	3 cut(s)	560, 721, 1072
MhlI	GDGCHC	1 cut(s)	607
MlsI	TGGCCA	1 cut(s)	672
MluCI	AATT	9 cut(s)	39, 329, 378, 418, 454, 466, 489, 967, 1168
MluNI	TGGCCA	1 cut(s)	672
MlyI	GAGTC	1 cut(s)	149
MmeI	TCCRAC	2 cut(s)	68, 599
Mox20I	TGGCCA	1 cut(s)	672
MscI	TGGCCA	1 cut(s)	672
MseI	TTAA	5 cut(s)	249, 453, 741, 1085, 1151
MslI	CAYNNNNRTG	1 cut(s)	1064
Msp20I	TGGCCA	1 cut(s)	672
MspA1I	CMGCKG	3 cut(s)	521, 791, 1136
MspI	CCGG	3 cut(s)	23, 565, 584
MspR9I	CCNGG	1 cut(s)	565
MwoI	GCNNNNNNNGC	1 cut(s)	963
NciI	CCSGG	1 cut(s)	565
NdeII	GATC	6 cut(s)	560, 721, 914, 920, 1042, 1072
NlaIII	CATG	5 cut(s)	548, 677, 740, 995, 1069
NmuCI	GTSAC	1 cut(s)	1191
NspI	RCATGY	2 cut(s)	740, 995
NspV	TTCGAA	1 cut(s)	185
PaeI	GCATGC	1 cut(s)	995
PaqCI	CACCTGC	1 cut(s)	1024
PciI	ACATGT	1 cut(s)	736
PfeI	GAWTC	1 cut(s)	1007
PfoI	TCCNGGA	1 cut(s)	563
PkrI	GCNGC	7 cut(s)	351, 520, 523, 790, 793, 894, 1115
PleI	GAGTC	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	149
PscI	ACATGT	1 cut(s)	736
PsuI	RGATCY	3 cut(s)	560, 721, 1072
PvuII	CAGCTG	2 cut(s)	521, 1136
RsaI	GTAC	3 cut(s)	232, 761, 950
RsaNI	GTAC	3 cut(s)	231, 760, 949
RseI	CAYNNNNRTG	1 cut(s)	1064
SaqAI	TTAA	5 cut(s)	249, 453, 741, 1085, 1151
SatI	GCNGC	7 cut(s)	350, 519, 522, 789, 792, 893, 1114
Sau3AI	GATC	6 cut(s)	560, 721, 914, 920, 1042, 1072
ScaI	AGTACT	2 cut(s)	232, 950
SchI	GAGTC	1 cut(s)	149
ScrFI	CCNGG	1 cut(s)	565
SduI	GDGCHC	1 cut(s)	607
SfaNI	GCATC	1 cut(s)	603
SfuI	TTCGAA	1 cut(s)	185
SmiMI	CAYNNNNRTG	1 cut(s)	1064
SmlI	CTYRAG	1 cut(s)	701
SmoI	CTYRAG	1 cut(s)	701
SpeI	ACTAGT	2 cut(s)	83, 494
SphI	GCATGC	1 cut(s)	995
Sse9I	AATT	9 cut(s)	39, 329, 378, 418, 454, 466, 489, 967, 1168
SsiI	CCGC	4 cut(s)	471, 549, 640, 791
SspI	AATATT	2 cut(s)	220, 1024
SspMI	CTAG	3 cut(s)	84, 234, 495
StyD4I	CCNGG	1 cut(s)	563
StyI	CCWWGG	1 cut(s)	150
TaaI	ACNGT	2 cut(s)	769, 931
TaiI	ACGT	1 cut(s)	112
TaqI	TCGA	4 cut(s)	185, 459, 923, 1038
TasI	AATT	9 cut(s)	39, 329, 378, 418, 454, 466, 489, 967, 1168
TatI	WGTACW	3 cut(s)	230, 759, 948
TauI	GCSGC	1 cut(s)	794
TfiI	GAWTC	1 cut(s)	1007
Tru1I	TTAA	5 cut(s)	249, 453, 741, 1085, 1151
Tru9I	TTAA	5 cut(s)	249, 453, 741, 1085, 1151
TscAI	CASTG	1 cut(s)	850
TseFI	GTSAC	1 cut(s)	1191
TseI	GCWGC	6 cut(s)	349, 518, 521, 788, 892, 1113
Tsp45I	GTSAC	1 cut(s)	1191
TspDTI	ATGAA	4 cut(s)	690, 819, 834, 876
TspGWI	ACGGA	2 cut(s)	607, 927
TspRI	CASTG	1 cut(s)	850
XapI	RAATTY	1 cut(s)	378
XceI	RCATGY	2 cut(s)	740, 995
XspI	CTAG	3 cut(s)	84, 234, 495
ZrmI	AGTACT	2 cut(s)	232, 950

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.