Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0003843

Physical Location & Seq

Genomic Coordinates Forward (+)

28500537 .. 28505856

Gene Structure 5320 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG267300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGAGTTGTTCCCTGCACAGCCAGATTTGTCTCTGCAAATTAGCCCTCCAAACACCAAACCCACATCATCAGGTAGTTGGAGGAGAAGTGCAGAAGAAGAAGAGGCGGCCGAGGTGGATTTGGGGTTCTGGAAAAGAGCCTTAGACTCCAGAAACTCATCCATCTCCTCCGACACCTTCTCCGACCTCTCGCTATCGAATCCAACTCGCCTTTCTCATGATCAGTACTCCAACACCAACAGGATCAACCATTTCCATCACCAAAACCACTTCGGCCTCCAAAATGGCCATAATGGTAACACTAATGGTCTCCTTTTCCATGCCTTTCAGCAAAACCAGTTCCTAAACCCTCAACACCAACTCCATCATCACCAAAGGGTATTCGAGCAACAGCACCAGCAAGAACAACAAGGAGGGTACCTAGGTCCAGAGCTCGGGTTCTTGAGACCCATAAGAGGAATTCCAGTGTACCAGAACCCTCCTCCACCAAATCCTCATCTTCATCACCATCATCCTCCTCCTAATTTGTTCCCATTTTCTGCACAAAATATTAAGCCTAATCTAAATTTGGACACTACCGCTACTTCTCTATCCTCATCCAACAGTACATTAAGCTCACCCTCCAGTAACCCATTTCTCCGGTCTAGGTTCTTGTCCCGTTTTCCTGCCAAACGTAGCATGAGAGCCCCTCGGATGCGGTGGACTACCACTCTACACGCTCGATTTGTTCACGCCGTTGAGCTGTTGGGTGGCCATGAAAGGGCTACACCAAAGTCAGTTCTTGAGCTCATGGATGTGAAAGATCTCACCTTGGCACATGTTAAATCTCATCTGCAGATGTACCGGACGGTGAAAACTACCGATAAAGCAGCGGCAACTTCAGGACAATCTGAACTGTATGAAAATGCATCATCAGGGGATACCACTGAAGATATAATGCTCGACAATATTAATCAGAACCCAACAAGGTCTTCCGAGCAGGGAAGACCAAATCATGCTCAAGATAAGGAGTACTATGGTGGCCTATGGAGCAATTCTTCAAGGTATTATACACTCCTACCTAGTACTACTAAATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009791 GO:0009798 GO:0009889 GO:0009908 GO:0009943 GO:0009944 GO:0009955 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

359

Amino Acids

40.63

Weight (kDa)

8.74

Isoelectric Point (pI)

52.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	231 - 282	2.5e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003843)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32240 AT1G32240 AT1G32240
fragaria_vesca	FvH4_5g22990 FvH4_5g22990 FvH4_5g22990 FvH4_5g22990 FvH4_5g22990 FvH4_5g22990 FvH4_5g22990 FvH4_5g22990
malus_domestica	MD06G1026200.v1.1 MD16G1279800.v1.1
prunus_persica	Prupe.5G028400_v2.0.a1 Prupe.5G028400_v2.0.a1 Prupe.5G028400_v2.0.a1 Prupe.5G028400_v2.0.a1 Prupe.5G028400_v2.0.a1 Prupe.5G028400_v2.0.a1
pyrus_communis	pycom06g02130 pycom16g25010
rosa_chinensis	RchiOBHm_Chr7g0211731
rosa_laevigata	RLG00000002974
rosa_multiflora	Rmu_sc0001875.1_g000015
rosa_roxburghii	Rroxscaffold_3G00247530
rosa_rugosa	Rorug07G0127500 Rorug07G0127600 Rorug07G0127700 Rorug07G0127800
rosa_samantha	Rh7AG260700 Rh7BG253900 Rh7CG277200 Rh7DG267300
rosa_wichuraiana	Rw7G022220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	417
AccB1I	GGYRCC	1 cut(s)	417
AciI	CCGC	4 cut(s)	107, 579, 697, 872
AclWI	GGATC	1 cut(s)	251
AcoI	YGGCCR	3 cut(s)	108, 286, 751
AcsI	RAATTY	2 cut(s)	459, 565
AcuI	CTGAAG	2 cut(s)	864, 948
AfaI	GTAC	7 cut(s)	227, 419, 470, 607, 842, 1013, 1066
AfiI	CCNNNNNNNGG	3 cut(s)	434, 455, 760
AflIII	ACRYGT	1 cut(s)	817
AgsI	TTSAA	1 cut(s)	1041
AjuI	GAANNNNNNNTTGG	4 cut(s)	196, 228, 955, 987
AloI	GAACNNNNNNTCC	2 cut(s)	110, 142
AluBI	AGCT	4 cut(s)	433, 615, 742, 787
AluI	AGCT	4 cut(s)	433, 615, 742, 787
Alw21I	GWGCWC	2 cut(s)	435, 789
Alw26I	GTCTC	3 cut(s)	36, 314, 439
AlwI	GGATC	1 cut(s)	251
Ama87I	CYCGRG	1 cut(s)	434
AoxI	GGCC	5 cut(s)	108, 274, 286, 751, 1021
ApeKI	GCWGC	1 cut(s)	869
ApoI	RAATTY	2 cut(s)	459, 565
AseI	ATTAAT	1 cut(s)	951
Asp718I	GGTACC	1 cut(s)	417
AspA2I	CCTAGG	1 cut(s)	421
AspS9I	GGNCC	1 cut(s)	425
AsuHPI	GGTGA	6 cut(s)	251, 362, 497, 609, 799, 862
AvaI	CYCGRG	1 cut(s)	434
AvaII	GGWCC	1 cut(s)	425
AvrII	CCTAGG	1 cut(s)	421
BaeI	ACNNNNGTAYC	2 cut(s)	409, 442
BalI	TGGCCA	2 cut(s)	288, 753
BanI	GGYRCC	1 cut(s)	417
BanII	GRGCYC	3 cut(s)	435, 688, 789
BbsI	GAAGAC	2 cut(s)	963, 991
Bbv12I	GWGCWC	2 cut(s)	435, 789
BbvI	GCAGC	1 cut(s)	881
BccI	CCATC	4 cut(s)	170, 264, 372, 516
BceAI	ACGGC	1 cut(s)	719
BciVI	GTATCC	1 cut(s)	913
BclI	TGATCA	1 cut(s)	220
BcoDI	GTCTC	3 cut(s)	36, 314, 439
BfaI	CTAG	3 cut(s)	422, 645, 1062
BfmI	CTRYAG	1 cut(s)	833
BfuI	GTATCC	1 cut(s)	913
BglII	AGATCT	1 cut(s)	802
BisI	GCNGC	3 cut(s)	108, 870, 873
BlnI	CCTAGG	1 cut(s)	421
BlsI	GCNGC	3 cut(s)	109, 871, 874
BmcAI	AGTACT	3 cut(s)	227, 1013, 1066
Bme18I	GGWCC	1 cut(s)	425
BmeT110I	CYCGRG	1 cut(s)	434
BmgT120I	GGNCC	1 cut(s)	425
BmiI	GGNNCC	1 cut(s)	419
BmsI	GCATC	2 cut(s)	684, 917
BpiI	GAAGAC	2 cut(s)	963, 991
BplI	GAGNNNNNCTC	2 cut(s)	673, 705
BpmI	CTGGAG	2 cut(s)	133, 607
BpuEI	CTTGAG	3 cut(s)	463, 803, 984
BsaI	GGTCTC	2 cut(s)	314, 439
BsaJI	CCNNGG	4 cut(s)	111, 421, 689, 810
BsaWI	WCCGGW	2 cut(s)	639, 843
BsaXI	ACNNNNNCTCC	6 cut(s)	73, 103, 164, 194, 345, 375
Bsc4I	CCNNNNNNNGG	3 cut(s)	434, 455, 760
Bse1I	ACTGG	3 cut(s)	337, 464, 624
BseDI	CCNNGG	4 cut(s)	111, 421, 689, 810
BseGI	GGATG	5 cut(s)	158, 511, 596, 699, 799
BseLI	CCNNNNNNNGG	3 cut(s)	434, 455, 760
BseNI	ACTGG	3 cut(s)	337, 464, 624
BseRI	GAGGAG	4 cut(s)	97, 157, 471, 507
BseX3I	CGGCCG	1 cut(s)	108
BseXI	GCAGC	1 cut(s)	881
BsgI	GTGCAG	2 cut(s)	111, 525
Bsh1285I	CGRYCG	1 cut(s)	111
BshFI	GGCC	5 cut(s)	110, 276, 288, 753, 1023
BshNI	GGYRCC	1 cut(s)	417
BsiEI	CGRYCG	1 cut(s)	111
BsiHKAI	GWGCWC	2 cut(s)	435, 789
BsiHKCI	CYCGRG	1 cut(s)	434
BsiSI	CCGG	2 cut(s)	640, 844
BslFI	GGGAC	1 cut(s)	640
BslI	CCNNNNNNNGG	3 cut(s)	434, 455, 760
BsmAI	GTCTC	3 cut(s)	36, 314, 439
BsmFI	GGGAC	1 cut(s)	640
BsnI	GGCC	5 cut(s)	110, 276, 288, 753, 1023
Bso31I	GGTCTC	2 cut(s)	314, 439
BsoBI	CYCGRG	1 cut(s)	434
Bsp1286I	GDGCHC	3 cut(s)	435, 688, 789
Bsp143I	GATC	3 cut(s)	220, 243, 802
BspACI	CCGC	4 cut(s)	107, 579, 697, 872
BspANI	GGCC	5 cut(s)	110, 276, 288, 753, 1023
BspHI	TCATGA	1 cut(s)	217
BspLI	GGNNCC	1 cut(s)	419
BspMAI	CTGCAG	1 cut(s)	837
BspPI	GGATC	1 cut(s)	251
BspT107I	GGYRCC	1 cut(s)	417
BspTNI	GGTCTC	2 cut(s)	314, 439
BsrI	ACTGG	3 cut(s)	337, 464, 624
BssECI	CCNNGG	4 cut(s)	111, 421, 689, 810
BssMI	GATC	3 cut(s)	220, 243, 802
BssT1I	CCWWGG	2 cut(s)	421, 810
Bst4CI	ACNGT	3 cut(s)	605, 850, 897
Bst6I	CTCTTC	1 cut(s)	96
BstDEI	CTNAG	1 cut(s)	142
BstF5I	GGATG	5 cut(s)	158, 511, 596, 699, 799
BstKTI	GATC	3 cut(s)	223, 246, 805
BstMAI	GTCTC	3 cut(s)	36, 314, 439
BstMBI	GATC	3 cut(s)	220, 243, 802
BstMCI	CGRYCG	1 cut(s)	111
BstMWI	GCNNNNNNNGC	1 cut(s)	1029
BstNSI	RCATGY	1 cut(s)	821
BstSFI	CTRYAG	1 cut(s)	833
BstV1I	GCAGC	1 cut(s)	881
BstV2I	GAAGAC	2 cut(s)	963, 991
BstX2I	RGATCY	1 cut(s)	802
BstYI	RGATCY	1 cut(s)	802
BstZI	CGGCCG	1 cut(s)	108
BsuI	GTATCC	1 cut(s)	913
BsuRI	GGCC	5 cut(s)	110, 276, 288, 753, 1023
BtsCI	GGATG	5 cut(s)	158, 511, 596, 699, 799
BtsIMutI	CAGTG	2 cut(s)	471, 924
CciI	TCATGA	1 cut(s)	217
Cfr13I	GGNCC	1 cut(s)	425
Csp6I	GTAC	7 cut(s)	226, 418, 469, 606, 841, 1012, 1065
CviAII	CATG	7 cut(s)	218, 320, 679, 755, 790, 818, 995
CviQI	GTAC	7 cut(s)	226, 418, 469, 606, 841, 1012, 1065
DdeI	CTNAG	1 cut(s)	142
DpnI	GATC	3 cut(s)	222, 245, 804
DpnII	GATC	3 cut(s)	220, 243, 802
EaeI	YGGCCR	3 cut(s)	108, 286, 751
EagI	CGGCCG	1 cut(s)	108
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Ecl136II	GAGCTC	2 cut(s)	433, 787
EclXI	CGGCCG	1 cut(s)	108
Eco130I	CCWWGG	2 cut(s)	421, 810
Eco24I	GRGCYC	3 cut(s)	435, 688, 789
Eco31I	GGTCTC	2 cut(s)	314, 439
Eco47I	GGWCC	1 cut(s)	425
Eco52I	CGGCCG	1 cut(s)	108
Eco53kI	GAGCTC	2 cut(s)	433, 787
Eco57I	CTGAAG	2 cut(s)	864, 948
Eco88I	CYCGRG	1 cut(s)	434
EcoICRI	GAGCTC	2 cut(s)	433, 787
EcoRI	GAATTC	1 cut(s)	459
EcoT14I	CCWWGG	2 cut(s)	421, 810
EcoT22I	ATGCAT	1 cut(s)	910
EcoT38I	GRGCYC	3 cut(s)	435, 688, 789
ErhI	CCWWGG	2 cut(s)	421, 810
FaeI	CATG	7 cut(s)	221, 323, 682, 758, 793, 821, 998
FaqI	GGGAC	1 cut(s)	640
FatI	CATG	7 cut(s)	217, 319, 678, 754, 789, 817, 994
FbaI	TGATCA	1 cut(s)	220
Fnu4HI	GCNGC	3 cut(s)	108, 870, 873
FokI	GGATG	5 cut(s)	145, 498, 583, 706, 806
FriOI	GRGCYC	3 cut(s)	435, 688, 789
Fsp4HI	GCNGC	3 cut(s)	108, 870, 873
FspBI	CTAG	3 cut(s)	422, 645, 1062
GluI	GCNGC	3 cut(s)	108, 870, 873
GsuI	CTGGAG	2 cut(s)	133, 607
HaeIII	GGCC	5 cut(s)	110, 276, 288, 753, 1023
HapII	CCGG	2 cut(s)	640, 844
Hin1II	CATG	7 cut(s)	221, 323, 682, 758, 793, 821, 998
HinfI	GANTC	2 cut(s)	146, 199
HpaII	CCGG	2 cut(s)	640, 844
HphI	GGTGA	6 cut(s)	251, 362, 497, 609, 799, 862
Hpy166II	GTNNAC	3 cut(s)	469, 702, 730
Hpy188I	TCNGA	6 cut(s)	172, 184, 693, 892, 957, 976
Hpy188III	TCNNGA	8 cut(s)	130, 150, 218, 428, 442, 782, 882, 1001
Hpy8I	GTNNAC	3 cut(s)	469, 702, 730
HpyAV	CCTTC	1 cut(s)	187
HpyCH4III	ACNGT	3 cut(s)	605, 850, 897
HpyCH4IV	ACGT	1 cut(s)	673
HpyCH4V	TGCA	6 cut(s)	17, 37, 92, 542, 835, 908
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1029
HpyF3I	CTNAG	1 cut(s)	142
HpySE526I	ACGT	1 cut(s)	673
Hsp92II	CATG	7 cut(s)	221, 323, 682, 758, 793, 821, 998
KpnI	GGTACC	1 cut(s)	421
Ksp22I	TGATCA	1 cut(s)	220
Kzo9I	GATC	3 cut(s)	220, 243, 802
LmnI	GCTCC	1 cut(s)	1029
Lsp1109I	GCAGC	1 cut(s)	881
LweI	GCATC	2 cut(s)	684, 917
MaeI	CTAG	3 cut(s)	422, 645, 1062
MaeII	ACGT	1 cut(s)	673
MaeIII	GTNAC	2 cut(s)	296, 626
MalI	GATC	3 cut(s)	222, 245, 804
MboI	GATC	3 cut(s)	220, 243, 802
MboII	GAAGA	8 cut(s)	107, 110, 113, 491, 941, 963, 996, 1029
MflI	RGATCY	1 cut(s)	802
MhlI	GDGCHC	3 cut(s)	435, 688, 789
MlsI	TGGCCA	2 cut(s)	288, 753
MluCI	AATT	6 cut(s)	39, 459, 523, 565, 1033, 1073
MluNI	TGGCCA	2 cut(s)	288, 753
MlyI	GAGTC	1 cut(s)	140
MmeI	TCCRAC	6 cut(s)	59, 195, 207, 227, 255, 624
Mox20I	TGGCCA	2 cut(s)	288, 753
Mph1103I	ATGCAT	1 cut(s)	910
MscI	TGGCCA	2 cut(s)	288, 753
MseI	TTAA	4 cut(s)	552, 611, 822, 951
MslI	CAYNNNNRTG	1 cut(s)	794
Msp20I	TGGCCA	2 cut(s)	288, 753
MspA1I	CMGCKG	1 cut(s)	872
MspI	CCGG	2 cut(s)	640, 844
MwoI	GCNNNNNNNGC	1 cut(s)	1029
NdeII	GATC	3 cut(s)	220, 243, 802
NlaIII	CATG	7 cut(s)	221, 323, 682, 758, 793, 821, 998
NlaIV	GGNNCC	1 cut(s)	419
NmeAIII	GCCGAG	1 cut(s)	136
NsiI	ATGCAT	1 cut(s)	910
NspI	RCATGY	1 cut(s)	821
PagI	TCATGA	1 cut(s)	217
PciI	ACATGT	1 cut(s)	817
PfeI	GAWTC	1 cut(s)	199
PkrI	GCNGC	3 cut(s)	109, 871, 874
PleI	GAGTC	1 cut(s)	140
PpsI	GAGTC	1 cut(s)	140
PscI	ACATGT	1 cut(s)	817
PshBI	ATTAAT	1 cut(s)	951
Psp124BI	GAGCTC	2 cut(s)	435, 789
PspN4I	GGNNCC	1 cut(s)	419
PspPI	GGNCC	1 cut(s)	425
PstI	CTGCAG	1 cut(s)	837
PsuI	RGATCY	1 cut(s)	802
RsaI	GTAC	7 cut(s)	227, 419, 470, 607, 842, 1013, 1066
RsaNI	GTAC	7 cut(s)	226, 418, 469, 606, 841, 1012, 1065
RseI	CAYNNNNRTG	1 cut(s)	794
SacI	GAGCTC	2 cut(s)	435, 789
SaqAI	TTAA	4 cut(s)	552, 611, 822, 951
SatI	GCNGC	3 cut(s)	108, 870, 873
Sau3AI	GATC	3 cut(s)	220, 243, 802
Sau96I	GGNCC	1 cut(s)	425
ScaI	AGTACT	3 cut(s)	227, 1013, 1066
SchI	GAGTC	1 cut(s)	140
SduI	GDGCHC	3 cut(s)	435, 688, 789
SfaNI	GCATC	2 cut(s)	684, 917
SfcI	CTRYAG	1 cut(s)	833
SinI	GGWCC	1 cut(s)	425
SmiMI	CAYNNNNRTG	1 cut(s)	794
SmlI	CTYRAG	3 cut(s)	442, 782, 999
SmoI	CTYRAG	3 cut(s)	442, 782, 999
Sse9I	AATT	6 cut(s)	39, 459, 523, 565, 1033, 1073
SsiI	CCGC	4 cut(s)	107, 579, 697, 872
SspI	AATATT	2 cut(s)	550, 949
SspMI	CTAG	3 cut(s)	422, 645, 1062
SstI	GAGCTC	2 cut(s)	435, 789
StyI	CCWWGG	2 cut(s)	421, 810
TaaI	ACNGT	3 cut(s)	605, 850, 897
TaiI	ACGT	1 cut(s)	676
TaqI	TCGA	4 cut(s)	197, 384, 721, 942
TasI	AATT	6 cut(s)	39, 459, 523, 565, 1033, 1073
TatI	WGTACW	4 cut(s)	225, 605, 1011, 1064
TauI	GCSGC	2 cut(s)	110, 875
TfiI	GAWTC	1 cut(s)	199
Tru1I	TTAA	4 cut(s)	552, 611, 822, 951
Tru9I	TTAA	4 cut(s)	552, 611, 822, 951
TscAI	CASTG	2 cut(s)	471, 931
TseI	GCWGC	1 cut(s)	869
TspDTI	ATGAA	3 cut(s)	491, 771, 915
TspRI	CASTG	2 cut(s)	471, 931
VpaK11BI	GGWCC	1 cut(s)	425
VspI	ATTAAT	1 cut(s)	951
XapI	RAATTY	2 cut(s)	459, 565
XceI	RCATGY	1 cut(s)	821
XmaJI	CCTAGG	1 cut(s)	421
XspI	CTAG	3 cut(s)	422, 645, 1062
ZrmI	AGTACT	3 cut(s)	227, 1013, 1066
Zsp2I	ATGCAT	1 cut(s)	910

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.