Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0003843

Physical Location & Seq

Genomic Coordinates Reverse (-)

38120093 .. 38127830

Gene Structure 7738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1279800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGGAGCTGTTCCCTGCACAACCAGACTTATCTCTACAAATTAGCCCTCCAAACAGCAAACCCTTGTCCTCCTCCTCATCAACTAGTTGGAGGAGAAGCAGTCATCATAGTCATCAGGAGGAGATGGATTTGGGGTTTTGGAAGAGAGCCTTGAAATCCCGAAACTCCACCTTCGATGAGCTTTTGAACACCAATCATCGTCCCCACCACTGCAGTAATATTAAAACCAGTACTAGCTGTAATGGTGGTAATGGCAATCTTTTCCATCCCTTTCAGTTTCAGCAAAGCCATTACTTTCCACAAGTTCCCCAAGCAGATGTGCAACAACAATTACAGCAATCGGAAGAGCTGCTTGGGTGTTTGAGACCCATTAGAGGAATTCCACTCTATCAAAACCCTCATCCTCCTCCTCCTCCTAATAATTTCTTCCCATTTTCTTCTTCACAAAAGCCGGTTAATTTCGATAATAATTCCGCAACCTCTACCTCTACAATTTCTAGTTCAACCCCACTATTTCAAGCAGCTGCTTATCATCATCATCGTCAAGGTCATCATGGTGGTCTTCTAAGATCCCAAATTTTCTCTCGGTTTCCGGCCAAACGAAGCATGAGAGCCCCTCGGATGCGTTGGACTACTACTCTTCATTCCCGCTTTGTTCATGCAGTTGAGCTTTTGGGTGGCCATGAAAGGGCAACACCAAAGTCAGTTCTTGAGCTAATGGATGTCAAAGATCTCACCTTGGCACATGTTAAATCTCACTTACAGATGTACCGGACGGTGAAAACCACTGATAAAGCAGCGGCCTCTTCAGGACAAAGTGATGTATATGAAAATGCTTCATCTGGGGACACCACTGAAGACATAATGTATGAACTTCAGAACCCAAGAAGGTCTTGTGAGCAGCTACCATCACCTCAGCAGGGTTCAAGATCGACTACTGTTCAAAATAATAAGGAGTACTACGGCCTCTGGAGCAATTCTTCAAGAGAAGCTTGGTTGCATGCAAACCCAAATGATTCTGCATCTGCAAATATTATAACGTCTCTCGATGATCAGGAGAGGGAGGACCTGAACATGATGGATCCGAAAGGATTAAGCTATGAGAGAATATCAGATGTAAGCAGCTCCTCAACAAACATTTCAGCAGGAGGGACAAGCTTAAGCCCCAGGAAGCCCAATTTGGAGTTCACTTTGGGCAGGTCACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009791 GO:0009798 GO:0009889 GO:0009908 GO:0009943 GO:0009944 GO:0009955 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

403

Amino Acids

45.09

Weight (kDa)

8.61

Isoelectric Point (pI)

65.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	207 - 258	3.8e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003843)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32240 AT1G32240 AT1G32240
fragaria_vesca	FvH4_5g22990 FvH4_5g22990 FvH4_5g22990 FvH4_5g22990 FvH4_5g22990 FvH4_5g22990 FvH4_5g22990 FvH4_5g22990
malus_domestica	MD06G1026200.v1.1 MD16G1279800.v1.1
prunus_persica	Prupe.5G028400_v2.0.a1 Prupe.5G028400_v2.0.a1 Prupe.5G028400_v2.0.a1 Prupe.5G028400_v2.0.a1 Prupe.5G028400_v2.0.a1 Prupe.5G028400_v2.0.a1
pyrus_communis	pycom06g02130 pycom16g25010
rosa_chinensis	RchiOBHm_Chr7g0211731
rosa_laevigata	RLG00000002974
rosa_multiflora	Rmu_sc0001875.1_g000015
rosa_roxburghii	Rroxscaffold_3G00247530
rosa_rugosa	Rorug07G0127500 Rorug07G0127600 Rorug07G0127700 Rorug07G0127800
rosa_samantha	Rh7AG260700 Rh7BG253900 Rh7CG277200 Rh7DG267300
rosa_wichuraiana	Rw7G022220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1037
Acc36I	ACCTGC	1 cut(s)	1188
AciI	CCGC	3 cut(s)	474, 649, 800
AclWI	GGATC	3 cut(s)	564, 1076, 1089
AcoI	YGGCCR	2 cut(s)	594, 679
AcsI	RAATTY	2 cut(s)	378, 576
AcuI	CTGAAG	3 cut(s)	792, 860, 876
AfaI	GTAC	3 cut(s)	232, 770, 959
AfiI	CCNNNNNNNGG	3 cut(s)	374, 688, 920
AflII	CTTAAG	1 cut(s)	1159
AflIII	ACRYGT	1 cut(s)	745
AgsI	TTSAA	7 cut(s)	154, 187, 504, 518, 927, 944, 984
AhlI	ACTAGT	1 cut(s)	83
AjnI	CCWGG	1 cut(s)	1166
AjuI	GAANNNNNNNTTGG	6 cut(s)	336, 368, 1163, 1169, 1195, 1201
Alw26I	GTCTC	2 cut(s)	358, 1047
AlwI	GGATC	3 cut(s)	564, 1076, 1089
AoxI	GGCC	4 cut(s)	594, 679, 801, 964
ApeKI	GCWGC	6 cut(s)	349, 521, 524, 797, 901, 1122
ApoI	RAATTY	2 cut(s)	378, 576
AspS9I	GGNCC	1 cut(s)	1066
AsuHPI	GGTGA	3 cut(s)	727, 790, 903
AvaII	GGWCC	1 cut(s)	1066
BaeI	ACNNNNGTAYC	2 cut(s)	752, 785
BalI	TGGCCA	1 cut(s)	681
BamHI	GGATCC	1 cut(s)	1081
BanII	GRGCYC	1 cut(s)	616
BbsI	GAAGAC	2 cut(s)	554, 864
BbvCI	CCTCAGC	1 cut(s)	915
BbvI	GCAGC	6 cut(s)	336, 511, 533, 809, 913, 1134
BccI	CCATC	4 cut(s)	118, 273, 916, 1072
BceAI	ACGGC	1 cut(s)	979
BciT130I	CCWGG	1 cut(s)	1168
BclI	TGATCA	1 cut(s)	1051
BcoDI	GTCTC	2 cut(s)	358, 1047
BcuI	ACTAGT	1 cut(s)	83
BfaI	CTAG	3 cut(s)	84, 234, 498
BfmI	CTRYAG	1 cut(s)	211
BfrI	CTTAAG	1 cut(s)	1159
BfuAI	ACCTGC	1 cut(s)	1188
BglII	AGATCT	1 cut(s)	730
BisI	GCNGC	7 cut(s)	350, 522, 525, 798, 801, 902, 1123
BlsI	GCNGC	7 cut(s)	351, 523, 526, 799, 802, 903, 1124
BmcAI	AGTACT	2 cut(s)	232, 959
Bme1390I	CCNGG	1 cut(s)	1168
Bme18I	GGWCC	1 cut(s)	1066
BmgT120I	GGNCC	1 cut(s)	1066
BmiI	GGNNCC	1 cut(s)	1083
BmrFI	CCNGG	1 cut(s)	1168
BmsI	GCATC	2 cut(s)	612, 1031
BpiI	GAAGAC	2 cut(s)	554, 864
BplI	GAGNNNNNCTC	2 cut(s)	601, 633
BpmI	CTGGAG	1 cut(s)	991
Bpu10I	CCTNAGC	1 cut(s)	915
BpuEI	CTTGAG	1 cut(s)	731
BsaI	GGTCTC	1 cut(s)	358
BsaJI	CCNNGG	3 cut(s)	617, 738, 1166
BsaWI	WCCGGW	1 cut(s)	771
BsaXI	ACNNNNNCTCC	2 cut(s)	85, 115
Bsc4I	CCNNNNNNNGG	3 cut(s)	374, 688, 920
Bse118I	RCCGGY	1 cut(s)	451
Bse1I	ACTGG	1 cut(s)	228
BseBI	CCWGG	1 cut(s)	1168
BseDI	CCNNGG	3 cut(s)	617, 738, 1166
BseGI	GGATG	4 cut(s)	265, 400, 627, 727
BseLI	CCNNNNNNNGG	3 cut(s)	374, 688, 920
BseMII	CTCAG	1 cut(s)	929
BseNI	ACTGG	1 cut(s)	228
BseRI	GAGGAG	8 cut(s)	61, 64, 106, 134, 396, 399, 402, 1117
BseXI	GCAGC	6 cut(s)	336, 511, 533, 809, 913, 1134
BshFI	GGCC	4 cut(s)	596, 681, 803, 966
BsiSI	CCGG	3 cut(s)	452, 593, 772
BslFI	GGGAC	3 cut(s)	186, 860, 1165
BslI	CCNNNNNNNGG	3 cut(s)	374, 688, 920
BsmAI	GTCTC	2 cut(s)	358, 1047
BsmBI	CGTCTC	1 cut(s)	1047
BsmFI	GGGAC	3 cut(s)	186, 860, 1165
BsnI	GGCC	4 cut(s)	596, 681, 803, 966
Bso31I	GGTCTC	1 cut(s)	358
Bsp1286I	GDGCHC	1 cut(s)	616
Bsp143I	GATC	5 cut(s)	569, 730, 929, 1051, 1081
BspACI	CCGC	3 cut(s)	474, 649, 800
BspANI	GGCC	4 cut(s)	596, 681, 803, 966
BspCNI	CTCAG	1 cut(s)	928
BspLI	GGNNCC	1 cut(s)	1083
BspMAI	CTGCAG	1 cut(s)	215
BspMI	ACCTGC	1 cut(s)	1188
BspPI	GGATC	3 cut(s)	564, 1076, 1089
BspQI	GCTCTTC	1 cut(s)	339
BspTI	CTTAAG	1 cut(s)	1159
BspTNI	GGTCTC	1 cut(s)	358
BsrFI	RCCGGY	1 cut(s)	451
BsrI	ACTGG	1 cut(s)	228
BssAI	RCCGGY	1 cut(s)	451
BssECI	CCNNGG	3 cut(s)	617, 738, 1166
BssMI	GATC	5 cut(s)	569, 730, 929, 1051, 1081
BssT1I	CCWWGG	1 cut(s)	738
Bst2UI	CCWGG	1 cut(s)	1168
Bst4CI	ACNGT	2 cut(s)	778, 940
Bst6I	CTCTTC	4 cut(s)	137, 339, 645, 811
BstAFI	CTTAAG	1 cut(s)	1159
BstC8I	GCNNGC	1 cut(s)	1002
BstDEI	CTNAG	2 cut(s)	566, 915
BstF5I	GGATG	4 cut(s)	265, 400, 627, 727
BstKTI	GATC	5 cut(s)	572, 733, 932, 1054, 1084
BstMAI	GTCTC	2 cut(s)	358, 1047
BstMBI	GATC	5 cut(s)	569, 730, 929, 1051, 1081
BstMWI	GCNNNNNNNGC	1 cut(s)	972
BstNI	CCWGG	1 cut(s)	1168
BstNSI	RCATGY	2 cut(s)	749, 1004
BstSCI	CCNGG	1 cut(s)	1166
BstSFI	CTRYAG	1 cut(s)	211
BstV1I	GCAGC	6 cut(s)	336, 511, 533, 809, 913, 1134
BstV2I	GAAGAC	2 cut(s)	554, 864
BstX2I	RGATCY	3 cut(s)	569, 730, 1081
BstYI	RGATCY	3 cut(s)	569, 730, 1081
BsuRI	GGCC	4 cut(s)	596, 681, 803, 966
BtsCI	GGATG	4 cut(s)	265, 400, 627, 727
BtsI	GCAGTG	1 cut(s)	208
BtsIMutI	CAGTG	3 cut(s)	208, 786, 852
BveI	ACCTGC	1 cut(s)	1188
Cac8I	GCNNGC	1 cut(s)	1002
Cfr10I	RCCGGY	1 cut(s)	451
Cfr13I	GGNCC	1 cut(s)	1066
Csp6I	GTAC	3 cut(s)	231, 769, 958
CviAII	CATG	7 cut(s)	554, 607, 659, 683, 746, 1001, 1075
CviQI	GTAC	3 cut(s)	231, 769, 958
DdeI	CTNAG	2 cut(s)	566, 915
DpnI	GATC	5 cut(s)	571, 732, 931, 1053, 1083
DpnII	GATC	5 cut(s)	569, 730, 929, 1051, 1081
EaeI	YGGCCR	2 cut(s)	594, 679
Eam1104I	CTCTTC	4 cut(s)	137, 339, 645, 811
EarI	CTCTTC	4 cut(s)	137, 339, 645, 811
Eco130I	CCWWGG	1 cut(s)	738
Eco24I	GRGCYC	1 cut(s)	616
Eco31I	GGTCTC	1 cut(s)	358
Eco47I	GGWCC	1 cut(s)	1066
Eco57I	CTGAAG	3 cut(s)	792, 860, 876
EcoO109I	RGGNCCY	1 cut(s)	1066
EcoRI	GAATTC	1 cut(s)	378
EcoRII	CCWGG	1 cut(s)	1166
EcoT14I	CCWWGG	1 cut(s)	738
EcoT38I	GRGCYC	1 cut(s)	616
ErhI	CCWWGG	1 cut(s)	738
Esp3I	CGTCTC	1 cut(s)	1047
FaeI	CATG	7 cut(s)	557, 610, 662, 686, 749, 1004, 1078
FalI	AAGNNNNNCTT	8 cut(s)	134, 166, 336, 368, 877, 909, 976, 1008
FaqI	GGGAC	3 cut(s)	186, 860, 1165
FatI	CATG	7 cut(s)	553, 606, 658, 682, 745, 1000, 1074
FauI	CCCGC	1 cut(s)	656
FbaI	TGATCA	1 cut(s)	1051
Fnu4HI	GCNGC	7 cut(s)	350, 522, 525, 798, 801, 902, 1123
FokI	GGATG	4 cut(s)	252, 387, 634, 734
FriOI	GRGCYC	1 cut(s)	616
Fsp4HI	GCNGC	7 cut(s)	350, 522, 525, 798, 801, 902, 1123
FspBI	CTAG	3 cut(s)	84, 234, 498
GluI	GCNGC	7 cut(s)	350, 522, 525, 798, 801, 902, 1123
GsuI	CTGGAG	1 cut(s)	991
HaeIII	GGCC	4 cut(s)	596, 681, 803, 966
HapII	CCGG	3 cut(s)	452, 593, 772
Hin1II	CATG	7 cut(s)	557, 610, 662, 686, 749, 1004, 1078
HindIII	AAGCTT	2 cut(s)	990, 1156
HinfI	GANTC	1 cut(s)	1016
HpaII	CCGG	3 cut(s)	452, 593, 772
HphI	GGTGA	3 cut(s)	727, 790, 903
Hpy166II	GTNNAC	1 cut(s)	1188
Hpy188I	TCNGA	5 cut(s)	343, 621, 879, 1086, 1114
Hpy188III	TCNNGA	9 cut(s)	116, 159, 710, 810, 927, 970, 984, 1046, 1055
Hpy8I	GTNNAC	1 cut(s)	1188
HpyAV	CCTTC	2 cut(s)	181, 882
HpyCH4III	ACNGT	2 cut(s)	778, 940
HpyCH4IV	ACGT	1 cut(s)	1040
HpyCH4V	TGCA	8 cut(s)	17, 213, 322, 662, 1000, 1004, 1022, 1028
HpyF10VI	GCNNNNNNNGC	1 cut(s)	972
HpyF3I	CTNAG	2 cut(s)	566, 915
HpySE526I	ACGT	1 cut(s)	1040
Hsp92II	CATG	7 cut(s)	557, 610, 662, 686, 749, 1004, 1078
Ksp22I	TGATCA	1 cut(s)	1051
Kzo9I	GATC	5 cut(s)	569, 730, 929, 1051, 1081
LguI	GCTCTTC	1 cut(s)	339
LmnI	GCTCC	3 cut(s)	4, 972, 1130
Lsp1109I	GCAGC	6 cut(s)	336, 511, 533, 809, 913, 1134
LweI	GCATC	2 cut(s)	612, 1031
MaeI	CTAG	3 cut(s)	84, 234, 498
MaeII	ACGT	1 cut(s)	1040
MaeIII	GTNAC	1 cut(s)	1200
MalI	GATC	5 cut(s)	571, 732, 931, 1053, 1083
MboI	GATC	5 cut(s)	569, 730, 929, 1051, 1081
MflI	RGATCY	3 cut(s)	569, 730, 1081
MhlI	GDGCHC	1 cut(s)	616
MlsI	TGGCCA	1 cut(s)	681
MluNI	TGGCCA	1 cut(s)	681
MmeI	TCCRAC	2 cut(s)	68, 608
Mox20I	TGGCCA	1 cut(s)	681
MscI	TGGCCA	1 cut(s)	681
MseI	TTAA	5 cut(s)	222, 456, 750, 1094, 1160
MslI	CAYNNNNRTG	1 cut(s)	555
Msp20I	TGGCCA	1 cut(s)	681
MspA1I	CMGCKG	2 cut(s)	524, 800
MspCI	CTTAAG	1 cut(s)	1159
MspI	CCGG	3 cut(s)	452, 593, 772
MspR9I	CCNGG	1 cut(s)	1168
MvaI	CCWGG	1 cut(s)	1168
MwoI	GCNNNNNNNGC	1 cut(s)	972
NdeII	GATC	5 cut(s)	569, 730, 929, 1051, 1081
NlaIII	CATG	7 cut(s)	557, 610, 662, 686, 749, 1004, 1078
NlaIV	GGNNCC	1 cut(s)	1083
NmuCI	GTSAC	1 cut(s)	1200
NspI	RCATGY	2 cut(s)	749, 1004
PaeI	GCATGC	1 cut(s)	1004
PciI	ACATGT	1 cut(s)	745
PciSI	GCTCTTC	1 cut(s)	339
PfeI	GAWTC	1 cut(s)	1016
PkrI	GCNGC	7 cut(s)	351, 523, 526, 799, 802, 903, 1124
PpuMI	RGGWCCY	1 cut(s)	1066
PscI	ACATGT	1 cut(s)	745
PsiI	TTATAA	1 cut(s)	1037
Psp5II	RGGWCCY	1 cut(s)	1066
Psp6I	CCWGG	1 cut(s)	1166
PspGI	CCWGG	1 cut(s)	1166
PspN4I	GGNNCC	1 cut(s)	1083
PspPI	GGNCC	1 cut(s)	1066
PspPPI	RGGWCCY	1 cut(s)	1066
PstI	CTGCAG	1 cut(s)	215
PsuI	RGATCY	3 cut(s)	569, 730, 1081
PvuII	CAGCTG	1 cut(s)	524
RsaI	GTAC	3 cut(s)	232, 770, 959
RsaNI	GTAC	3 cut(s)	231, 769, 958
RseI	CAYNNNNRTG	1 cut(s)	555
SapI	GCTCTTC	1 cut(s)	339
SaqAI	TTAA	5 cut(s)	222, 456, 750, 1094, 1160
SatI	GCNGC	7 cut(s)	350, 522, 525, 798, 801, 902, 1123
Sau3AI	GATC	5 cut(s)	569, 730, 929, 1051, 1081
Sau96I	GGNCC	1 cut(s)	1066
ScaI	AGTACT	2 cut(s)	232, 959
ScrFI	CCNGG	1 cut(s)	1168
SduI	GDGCHC	1 cut(s)	616
SfaNI	GCATC	2 cut(s)	612, 1031
SfcI	CTRYAG	1 cut(s)	211
SinI	GGWCC	1 cut(s)	1066
SmiMI	CAYNNNNRTG	1 cut(s)	555
SmlI	CTYRAG	2 cut(s)	710, 1159
SmoI	CTYRAG	2 cut(s)	710, 1159
SpeI	ACTAGT	1 cut(s)	83
SphI	GCATGC	1 cut(s)	1004
SsiI	CCGC	3 cut(s)	474, 649, 800
SspI	AATATT	2 cut(s)	220, 1033
SspMI	CTAG	3 cut(s)	84, 234, 498
StyD4I	CCNGG	1 cut(s)	1166
StyI	CCWWGG	1 cut(s)	738
TaaI	ACNGT	2 cut(s)	778, 940
TaiI	ACGT	1 cut(s)	1043
TaqI	TCGA	4 cut(s)	174, 462, 932, 1047
TatI	WGTACW	2 cut(s)	230, 957
TauI	GCSGC	1 cut(s)	803
TfiI	GAWTC	1 cut(s)	1016
Tru1I	TTAA	5 cut(s)	222, 456, 750, 1094, 1160
Tru9I	TTAA	5 cut(s)	222, 456, 750, 1094, 1160
TscAI	CASTG	3 cut(s)	215, 793, 859
TseFI	GTSAC	1 cut(s)	1200
TseI	GCWGC	6 cut(s)	349, 521, 524, 797, 901, 1122
Tsp45I	GTSAC	1 cut(s)	1200
TspDTI	ATGAA	6 cut(s)	632, 647, 699, 828, 843, 885
TspRI	CASTG	3 cut(s)	215, 793, 859
Vha464I	CTTAAG	1 cut(s)	1159
VpaK11BI	GGWCC	1 cut(s)	1066
XapI	RAATTY	2 cut(s)	378, 576
XceI	RCATGY	2 cut(s)	749, 1004
XspI	CTAG	3 cut(s)	84, 234, 498
ZrmI	AGTACT	2 cut(s)	232, 959

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.