Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0003843

Physical Location & Seq

Genomic Coordinates Forward (+)

2585802 .. 2588087

Gene Structure 2286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g02130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGAGCTGTTCCCTGCACAACCGGACTTATCTCTACAAATTAGCCCTCCAAACAGCAAACCCTCGTCCTCCTCCTCATCAACTAGTTGGAGGAGAAGCAGTCATAAACGTCATCAGGAGGGGGTGGATTTGGGGTTTTGGAGGAGAGCCTTGGACTCCCGAAACTCCACCTCTGACGAGCTTTCGAATACCAATCATCGTCCTCAACACTACAATAATATTACAGCCGGTACTAGCTGTAATGGTGTTAATGGCAATCTTTTCCATCCCTTTCAGTTTCAGCAAAGCCACTACTTTCCCCAAGTTCCCCAAGCAGATGTGCAACAAGAATTACAGCAATCGGATGAGCTGCTTGGGTTTTTGAGACCCATCAGAGGAATTCCACTGTACCAAAACCCTCCTCCTCCTCCCCCTAATAATTTCTTCCCATTTTCTTCTTCACAAAAGCCAGTTAATTTCGACAATAATACCGCAACCTCCACCTCTACAATTACTAGTTCAACCCCACTATTTCAGGCAGCTGCTCATCATCATCATCAAGGTCATCATGGCGGTCTTCTAAGATCCCGGATTTTCTCTCGCTTTCCGGCCAAACGGAGCATAAGAGCCCCTCGGATGCGTTGGACTACTACTCTTCACGCCCGCTTTGTTCACGCCGTTGAGCTTTTGGGTGGCCATGAAAGGGCTACACCAAAGTCAGTTCTTGAGCTTATGGATGTCAAAGATCTCACATTGGCACATGTTAAATCTCATTTACAGATGTACAGGACGGTGAAAACCACCGATAAAGCAGCGGCCTCTTCAGTGTGGACAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009791 GO:0009798 GO:0009889 GO:0009908 GO:0009943 GO:0009944 GO:0009955 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

273

Amino Acids

30.64

Weight (kDa)

10.22

Isoelectric Point (pI)

63.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	205 - 256	1.6e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003843)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32240 AT1G32240 AT1G32240
fragaria_vesca	FvH4_5g22990 FvH4_5g22990 FvH4_5g22990 FvH4_5g22990 FvH4_5g22990 FvH4_5g22990 FvH4_5g22990 FvH4_5g22990
malus_domestica	MD06G1026200.v1.1 MD16G1279800.v1.1
prunus_persica	Prupe.5G028400_v2.0.a1 Prupe.5G028400_v2.0.a1 Prupe.5G028400_v2.0.a1 Prupe.5G028400_v2.0.a1 Prupe.5G028400_v2.0.a1 Prupe.5G028400_v2.0.a1
pyrus_communis	pycom06g02130 pycom16g25010
rosa_chinensis	RchiOBHm_Chr7g0211731
rosa_laevigata	RLG00000002974
rosa_multiflora	Rmu_sc0001875.1_g000015
rosa_roxburghii	Rroxscaffold_3G00247530
rosa_rugosa	Rorug07G0127500 Rorug07G0127600 Rorug07G0127700 Rorug07G0127800
rosa_samantha	Rh7AG260700 Rh7BG253900 Rh7CG277200 Rh7DG267300
rosa_wichuraiana	Rw7G022220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	471, 552, 643, 794
AclWI	GGATC	1 cut(s)	558
AcoI	YGGCCR	2 cut(s)	588, 673
AcsI	RAATTY	1 cut(s)	378
AcuI	CTGAAG	1 cut(s)	786
AfaI	GTAC	3 cut(s)	232, 389, 764
AfiI	CCNNNNNNNGG	2 cut(s)	374, 682
AflIII	ACRYGT	1 cut(s)	739
AgsI	TTSAA	1 cut(s)	501
AhlI	ACTAGT	2 cut(s)	83, 494
AluBI	AGCT	7 cut(s)	7, 181, 237, 349, 521, 664, 709
AluI	AGCT	7 cut(s)	7, 181, 237, 349, 521, 664, 709
Alw26I	GTCTC	1 cut(s)	358
AlwI	GGATC	1 cut(s)	558
AoxI	GGCC	3 cut(s)	588, 673, 795
ApeKI	GCWGC	4 cut(s)	349, 518, 521, 791
ApoI	RAATTY	1 cut(s)	378
AsuC2I	CCSGG	1 cut(s)	568
AsuHPI	GGTGA	1 cut(s)	784
AsuII	TTCGAA	1 cut(s)	185
BalI	TGGCCA	1 cut(s)	675
BanII	GRGCYC	1 cut(s)	610
BbsI	GAAGAC	1 cut(s)	548
BbvI	GCAGC	4 cut(s)	336, 508, 530, 803
BccI	CCATC	2 cut(s)	273, 377
BceAI	ACGGC	1 cut(s)	641
BcnI	CCSGG	1 cut(s)	568
BcoDI	GTCTC	1 cut(s)	358
BcuI	ACTAGT	2 cut(s)	83, 494
BfaI	CTAG	3 cut(s)	84, 234, 495
BglII	AGATCT	1 cut(s)	724
BisI	GCNGC	5 cut(s)	350, 519, 522, 792, 795
BlsI	GCNGC	5 cut(s)	351, 520, 523, 793, 796
Bme1390I	CCNGG	1 cut(s)	568
BmrFI	CCNGG	1 cut(s)	568
BmsI	GCATC	1 cut(s)	606
BpiI	GAAGAC	1 cut(s)	548
Bpu14I	TTCGAA	1 cut(s)	185
BpuEI	CTTGAG	1 cut(s)	725
BpuMI	CCSGG	1 cut(s)	568
BsaI	GGTCTC	1 cut(s)	358
BsaJI	CCNNGG	2 cut(s)	150, 611
BsaWI	WCCGGW	1 cut(s)	22
BsaXI	ACNNNNNCTCC	2 cut(s)	85, 115
Bsc4I	CCNNNNNNNGG	2 cut(s)	374, 682
Bse118I	RCCGGY	1 cut(s)	227
Bse1I	ACTGG	1 cut(s)	449
BseDI	CCNNGG	2 cut(s)	150, 611
BseGI	GGATG	4 cut(s)	265, 349, 621, 721
BseLI	CCNNNNNNNGG	2 cut(s)	374, 682
BseNI	ACTGG	1 cut(s)	449
BseRI	GAGGAG	7 cut(s)	61, 64, 106, 157, 390, 393, 396
BseXI	GCAGC	4 cut(s)	336, 508, 530, 803
BshFI	GGCC	3 cut(s)	590, 675, 797
BsiSI	CCGG	4 cut(s)	23, 228, 568, 587
BslI	CCNNNNNNNGG	2 cut(s)	374, 682
BsmAI	GTCTC	1 cut(s)	358
BsnI	GGCC	3 cut(s)	590, 675, 797
Bso31I	GGTCTC	1 cut(s)	358
Bsp119I	TTCGAA	1 cut(s)	185
Bsp1286I	GDGCHC	1 cut(s)	610
Bsp1407I	TGTACA	1 cut(s)	762
Bsp143I	GATC	2 cut(s)	563, 724
BspACI	CCGC	4 cut(s)	471, 552, 643, 794
BspANI	GGCC	3 cut(s)	590, 675, 797
BspPI	GGATC	1 cut(s)	558
BspT104I	TTCGAA	1 cut(s)	185
BspTNI	GGTCTC	1 cut(s)	358
BsrFI	RCCGGY	1 cut(s)	227
BsrGI	TGTACA	1 cut(s)	762
BsrI	ACTGG	1 cut(s)	449
BssAI	RCCGGY	1 cut(s)	227
BssECI	CCNNGG	2 cut(s)	150, 611
BssMI	GATC	2 cut(s)	563, 724
BssT1I	CCWWGG	1 cut(s)	150
Bst4CI	ACNGT	2 cut(s)	387, 772
Bst6I	CTCTTC	2 cut(s)	639, 805
BstAUI	TGTACA	1 cut(s)	762
BstBI	TTCGAA	1 cut(s)	185
BstC8I	GCNNGC	1 cut(s)	643
BstDEI	CTNAG	1 cut(s)	560
BstF5I	GGATG	4 cut(s)	265, 349, 621, 721
BstKTI	GATC	2 cut(s)	566, 727
BstMAI	GTCTC	1 cut(s)	358
BstMBI	GATC	2 cut(s)	563, 724
BstNSI	RCATGY	1 cut(s)	743
BstSCI	CCNGG	1 cut(s)	566
BstV1I	GCAGC	4 cut(s)	336, 508, 530, 803
BstV2I	GAAGAC	1 cut(s)	548
BstX2I	RGATCY	2 cut(s)	563, 724
BstYI	RGATCY	2 cut(s)	563, 724
BsuRI	GGCC	3 cut(s)	590, 675, 797
BtsCI	GGATG	4 cut(s)	265, 349, 621, 721
BtsIMutI	CAGTG	2 cut(s)	383, 810
Cac8I	GCNNGC	1 cut(s)	643
Cfr10I	RCCGGY	1 cut(s)	227
Csp6I	GTAC	3 cut(s)	231, 388, 763
CviAII	CATG	3 cut(s)	548, 677, 740
CviQI	GTAC	3 cut(s)	231, 388, 763
DdeI	CTNAG	1 cut(s)	560
DpnI	GATC	2 cut(s)	565, 726
DpnII	GATC	2 cut(s)	563, 724
EaeI	YGGCCR	2 cut(s)	588, 673
Eam1104I	CTCTTC	2 cut(s)	639, 805
EarI	CTCTTC	2 cut(s)	639, 805
Eco130I	CCWWGG	1 cut(s)	150
Eco24I	GRGCYC	1 cut(s)	610
Eco31I	GGTCTC	1 cut(s)	358
Eco57I	CTGAAG	1 cut(s)	786
EcoRI	GAATTC	1 cut(s)	378
EcoT14I	CCWWGG	1 cut(s)	150
EcoT38I	GRGCYC	1 cut(s)	610
ErhI	CCWWGG	1 cut(s)	150
FaeI	CATG	3 cut(s)	551, 680, 743
FaiI	YATR	6 cut(s)	105, 549, 602, 678, 713, 741
FatI	CATG	3 cut(s)	547, 676, 739
FauI	CCCGC	1 cut(s)	650
Fnu4HI	GCNGC	5 cut(s)	350, 519, 522, 792, 795
FokI	GGATG	4 cut(s)	252, 356, 628, 728
FriOI	GRGCYC	1 cut(s)	610
Fsp4HI	GCNGC	5 cut(s)	350, 519, 522, 792, 795
FspBI	CTAG	3 cut(s)	84, 234, 495
GluI	GCNGC	5 cut(s)	350, 519, 522, 792, 795
HaeIII	GGCC	3 cut(s)	590, 675, 797
HapII	CCGG	4 cut(s)	23, 228, 568, 587
Hin1II	CATG	3 cut(s)	551, 680, 743
HinfI	GANTC	1 cut(s)	155
HpaII	CCGG	4 cut(s)	23, 228, 568, 587
HphI	GGTGA	1 cut(s)	784
Hpy166II	GTNNAC	2 cut(s)	652, 810
Hpy188I	TCNGA	4 cut(s)	175, 343, 374, 615
Hpy188III	TCNNGA	3 cut(s)	116, 159, 704
Hpy8I	GTNNAC	2 cut(s)	652, 810
HpyCH4III	ACNGT	2 cut(s)	387, 772
HpyCH4IV	ACGT	1 cut(s)	109
HpyCH4V	TGCA	2 cut(s)	17, 322
HpyF3I	CTNAG	1 cut(s)	560
HpySE526I	ACGT	1 cut(s)	109
Hsp92II	CATG	3 cut(s)	551, 680, 743
Kzo9I	GATC	2 cut(s)	563, 724
LmnI	GCTCC	2 cut(s)	4, 597
LpnPI	CCDG	9 cut(s)	27, 36, 101, 241, 462, 500, 581, 600, 751
Lsp1109I	GCAGC	4 cut(s)	336, 508, 530, 803
LweI	GCATC	1 cut(s)	606
MaeI	CTAG	3 cut(s)	84, 234, 495
MaeII	ACGT	1 cut(s)	109
MalI	GATC	2 cut(s)	565, 726
MboI	GATC	2 cut(s)	563, 724
MboII	GAAGA	6 cut(s)	415, 426, 429, 548, 626, 792
MflI	RGATCY	2 cut(s)	563, 724
MhlI	GDGCHC	1 cut(s)	610
MlsI	TGGCCA	1 cut(s)	675
MluCI	AATT	6 cut(s)	39, 329, 378, 418, 454, 489
MluNI	TGGCCA	1 cut(s)	675
MlyI	GAGTC	1 cut(s)	149
MmeI	TCCRAC	2 cut(s)	68, 602
Mox20I	TGGCCA	1 cut(s)	675
MscI	TGGCCA	1 cut(s)	675
MseI	TTAA	3 cut(s)	249, 453, 744
Msp20I	TGGCCA	1 cut(s)	675
MspA1I	CMGCKG	2 cut(s)	521, 794
MspI	CCGG	4 cut(s)	23, 228, 568, 587
MspR9I	CCNGG	1 cut(s)	568
NciI	CCSGG	1 cut(s)	568
NdeII	GATC	2 cut(s)	563, 724
NlaIII	CATG	3 cut(s)	551, 680, 743
NspI	RCATGY	1 cut(s)	743
NspV	TTCGAA	1 cut(s)	185
PciI	ACATGT	1 cut(s)	739
PfoI	TCCNGGA	1 cut(s)	566
PkrI	GCNGC	5 cut(s)	351, 520, 523, 793, 796
PleI	GAGTC	1 cut(s)	149
PpsI	GAGTC	1 cut(s)	149
PscI	ACATGT	1 cut(s)	739
PsuI	RGATCY	2 cut(s)	563, 724
PvuII	CAGCTG	1 cut(s)	521
RsaI	GTAC	3 cut(s)	232, 389, 764
RsaNI	GTAC	3 cut(s)	231, 388, 763
SaqAI	TTAA	3 cut(s)	249, 453, 744
SatI	GCNGC	5 cut(s)	350, 519, 522, 792, 795
Sau3AI	GATC	2 cut(s)	563, 724
SchI	GAGTC	1 cut(s)	149
ScrFI	CCNGG	1 cut(s)	568
SduI	GDGCHC	1 cut(s)	610
SfaNI	GCATC	1 cut(s)	606
SfuI	TTCGAA	1 cut(s)	185
SmlI	CTYRAG	1 cut(s)	704
SmoI	CTYRAG	1 cut(s)	704
SpeI	ACTAGT	2 cut(s)	83, 494
Sse9I	AATT	6 cut(s)	39, 329, 378, 418, 454, 489
SsiI	CCGC	4 cut(s)	471, 552, 643, 794
SspI	AATATT	1 cut(s)	220
SspMI	CTAG	3 cut(s)	84, 234, 495
StyD4I	CCNGG	1 cut(s)	566
StyI	CCWWGG	1 cut(s)	150
TaaI	ACNGT	2 cut(s)	387, 772
TaiI	ACGT	1 cut(s)	112
TaqI	TCGA	2 cut(s)	185, 459
TasI	AATT	6 cut(s)	39, 329, 378, 418, 454, 489
TatI	WGTACW	1 cut(s)	762
TauI	GCSGC	1 cut(s)	797
Tru1I	TTAA	3 cut(s)	249, 453, 744
Tru9I	TTAA	3 cut(s)	249, 453, 744
TscAI	CASTG	2 cut(s)	390, 810
TseI	GCWGC	4 cut(s)	349, 518, 521, 791
TspDTI	ATGAA	1 cut(s)	693
TspGWI	ACGGA	1 cut(s)	610
TspRI	CASTG	2 cut(s)	390, 810
XapI	RAATTY	1 cut(s)	378
XceI	RCATGY	1 cut(s)	743
XspI	CTAG	3 cut(s)	84, 234, 495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.