FvH4_5g22990
MYB Family

Myb-like DNA-binding domain

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
14333417 .. 14339043
5627 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g22990.t3

Sequence Viewer

Length: 1203 bp
ATGGAGCTGTTCCCTGCACAGCCAGATTTGTCTCTGCAAATTAGCCCTCCAAACACCAAACCCACATCGTCAGGTAGTTGGAGGAGAAGTGCTGCAGAAGAAGAAGAGGCGGCCGAGGTGGATTTGGGGTTCTGGAAAAGAGCCTTAGACTCCAGAAACTCATCCATATCCTCCGACACCTTCTCCGACCTCTCGCTATCGAATCCGACCCGCCTCTCTCATGATCAATACTCCAACTCCAACAGAATCAACCATTTCCATCACCAAAACCACTTCGGCCTCCAAAATGGCCATAATGGTAACACTAACGGTCTCCTTTTCCATGCCTTTCAGCAAAACCAGTTCCTAAACCCTCAACACCAACTTCATCATCACCAAAGGGTATTCGAGCAACAGCAGCACCAGCAAGAACAGCAAGGAGGGTTCCTAGGCCCTGAGCTCGGATTCCTTAGACCCATAAGAGGAATTCCAGTGTACCAAAACCCTCCTCCTCCAAATCCTCATCTTCATCACCATCATCCTCCCCCTAATTTGTTCCCATTTTCTTCACAAAATATTAAGCCTAATCTAAATTTGGTCGACACTACCACTACTTCTCTATCCTCATCCAACAGTACATTAACCTCACCCTCTAGTAACCCATTTCTCCGGTCGAGGTTCTTGTCCCGTTTTCCGGCCAAACGTAGCATGAGAGCCCCTCGGATGCGCTGGACTACCACTCTACACGCTCGCTTCGTTCACGCCGTTGAGCTGTTGGGTGGCCATGAAAGGGCTACGCCAAAGTCAGTTCTTGAGCTCATGGATGTGAAGGATCTCACCTTGGCTCATGTTAAATCTCATCTGCAGATGTACCGGACGGTGAAAACTACCGATAAAGCAGCGGCAACTTCAGGACAATCTGAACTATATGAAAATGCATCATCTGGGGATACCACTGAAGATATAATGTTCGACAATATTAGTCAGAACCCAACAAGATCTTCTGAGCAGGGAAGACCGAATAATGCTCAAGATAAGGAGTACTATGGTGGCCTATGGAGCAATTCTTCAAGCAGAGAAGCTTGGTTGCATGGAAATAAACCAAAGGATGATTCTGCTGGAAATATGCCATCTCTTCTTGATCATGAGAAGGACATGATGGATCCCAAAGGCTTAAGAAACAGCTACGAGAGAATATCAGATATGATCGATTTGTGTCTCTGA

Protein Analysis

401

Amino Acids

45.22

Weight (kDa)

6.78

Isoelectric Point (pI)

52.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 234 - 285 3.1e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 579
AciI CCGC 3 cut(s) 110, 211, 881
AclWI GGATC 3 cut(s) 819, 1136, 1149
AcoI YGGCCR 4 cut(s) 111, 289, 675, 760
AcsI RAATTY 2 cut(s) 465, 571
AcuI CTGAAG 2 cut(s) 873, 957
AfaI GTAC 4 cut(s) 476, 616, 851, 1022
AfiI CCNNNNNNNGG 4 cut(s) 440, 461, 673, 769
AflII CTTAAG 1 cut(s) 1153
AgsI TTSAA 1 cut(s) 1050
AjuI GAANNNNNNNTTGG 4 cut(s) 964, 996, 1075, 1107
AloI GAACNNNNNNTCC 2 cut(s) 113, 145
AluBI AGCT 6 cut(s) 7, 439, 751, 796, 1061, 1164
AluI AGCT 6 cut(s) 7, 439, 751, 796, 1061, 1164
Alw21I GWGCWC 2 cut(s) 441, 798
Alw26I GTCTC 2 cut(s) 36, 317
AlwI GGATC 3 cut(s) 819, 1136, 1149
AoxI GGCC 7 cut(s) 111, 277, 289, 430, 675, 760, 1030
ApeKI GCWGC 3 cut(s) 92, 397, 878
ApoI RAATTY 2 cut(s) 465, 571
AspA2I CCTAGG 1 cut(s) 427
AspLEI GCGC 1 cut(s) 708
AspS9I GGNCC 1 cut(s) 431
AsuHPI GGTGA 6 cut(s) 254, 365, 503, 618, 808, 871
AvrII CCTAGG 1 cut(s) 427
BalI TGGCCA 2 cut(s) 291, 762
BamHI GGATCC 1 cut(s) 1141
BanII GRGCYC 3 cut(s) 441, 697, 798
BbsI GAAGAC 1 cut(s) 1000
Bbv12I GWGCWC 2 cut(s) 441, 798
BbvI GCAGC 3 cut(s) 79, 409, 890
BccI CCATC 4 cut(s) 267, 522, 1117, 1132
BceAI ACGGC 1 cut(s) 728
BciVI GTATCC 1 cut(s) 922
BclI TGATCA 2 cut(s) 223, 1120
BcoDI GTCTC 2 cut(s) 36, 317
BfaI CTAG 2 cut(s) 428, 633
BfmI CTRYAG 2 cut(s) 93, 842
BfrI CTTAAG 1 cut(s) 1153
BfuI GTATCC 1 cut(s) 922
BglII AGATCT 1 cut(s) 977
BisI GCNGC 5 cut(s) 93, 111, 398, 879, 882
BlnI CCTAGG 1 cut(s) 427
BlsI GCNGC 5 cut(s) 94, 112, 399, 880, 883
BmcAI AGTACT 1 cut(s) 1022
BmgT120I GGNCC 1 cut(s) 431
BmiI GGNNCC 2 cut(s) 425, 1143
BmsI GCATC 2 cut(s) 693, 926
BpiI GAAGAC 1 cut(s) 1000
BplI GAGNNNNNCTC 2 cut(s) 682, 714
BpmI CTGGAG 1 cut(s) 136
Bpu10I CCTNAGC 1 cut(s) 435
BpuEI CTTGAG 2 cut(s) 812, 993
Bsa29I ATCGAT 1 cut(s) 1188
BsaI GGTCTC 1 cut(s) 317
BsaJI CCNNGG 4 cut(s) 114, 427, 698, 819
BsaWI WCCGGW 2 cut(s) 648, 852
BsaXI ACNNNNNCTCC 6 cut(s) 73, 103, 167, 197, 221, 251
Bsc4I CCNNNNNNNGG 4 cut(s) 440, 461, 673, 769
Bse1I ACTGG 2 cut(s) 340, 470
BseCI ATCGAT 1 cut(s) 1188
BseDI CCNNGG 4 cut(s) 114, 427, 698, 819
BseGI GGATG 6 cut(s) 161, 517, 605, 708, 808, 1093
BseLI CCNNNNNNNGG 4 cut(s) 440, 461, 673, 769
BseMII CTCAG 2 cut(s) 426, 975
BseNI ACTGG 2 cut(s) 340, 470
BseRI GAGGAG 3 cut(s) 97, 477, 480
BseX3I CGGCCG 1 cut(s) 111
BseXI GCAGC 3 cut(s) 79, 409, 890
Bsh1285I CGRYCG 2 cut(s) 114, 653
BshFI GGCC 7 cut(s) 113, 279, 291, 432, 677, 762, 1032
BshVI ATCGAT 1 cut(s) 1188
BsiEI CGRYCG 2 cut(s) 114, 653
BsiHKAI GWGCWC 2 cut(s) 441, 798
BsiSI CCGG 3 cut(s) 649, 674, 853
BslFI GGGAC 1 cut(s) 649
BslI CCNNNNNNNGG 4 cut(s) 440, 461, 673, 769
BsmAI GTCTC 2 cut(s) 36, 317
BsmFI GGGAC 1 cut(s) 649
BsnI GGCC 7 cut(s) 113, 279, 291, 432, 677, 762, 1032
Bso31I GGTCTC 1 cut(s) 317
Bsp1286I GDGCHC 3 cut(s) 441, 697, 798
Bsp143I GATC 6 cut(s) 223, 811, 977, 1120, 1141, 1185
BspACI CCGC 3 cut(s) 110, 211, 881
BspANI GGCC 7 cut(s) 113, 279, 291, 432, 677, 762, 1032
BspCNI CTCAG 2 cut(s) 427, 976
BspDI ATCGAT 1 cut(s) 1188
BspHI TCATGA 2 cut(s) 220, 1123
BspLI GGNNCC 2 cut(s) 425, 1143
BspMAI CTGCAG 2 cut(s) 97, 846
BspPI GGATC 3 cut(s) 819, 1136, 1149
BspTI CTTAAG 1 cut(s) 1153
BspTNI GGTCTC 1 cut(s) 317
BsrI ACTGG 2 cut(s) 340, 470
BssECI CCNNGG 4 cut(s) 114, 427, 698, 819
BssMI GATC 6 cut(s) 223, 811, 977, 1120, 1141, 1185
BssT1I CCWWGG 2 cut(s) 427, 819
Bst4CI ACNGT 3 cut(s) 311, 614, 859
Bst6I CTCTTC 2 cut(s) 99, 1119
BstAFI CTTAAG 1 cut(s) 1153
BstC8I GCNNGC 1 cut(s) 730
BstDEI CTNAG 4 cut(s) 145, 435, 449, 984
BstF5I GGATG 6 cut(s) 161, 517, 605, 708, 808, 1093
BstHHI GCGC 1 cut(s) 708
BstKTI GATC 6 cut(s) 226, 814, 980, 1123, 1144, 1188
BstMAI GTCTC 2 cut(s) 36, 317
BstMBI GATC 6 cut(s) 223, 811, 977, 1120, 1141, 1185
BstMCI CGRYCG 2 cut(s) 114, 653
BstMWI GCNNNNNNNGC 4 cut(s) 397, 403, 412, 1038
BstSFI CTRYAG 2 cut(s) 93, 842
BstV1I GCAGC 3 cut(s) 79, 409, 890
BstV2I GAAGAC 1 cut(s) 1000
BstX2I RGATCY 3 cut(s) 811, 977, 1141
BstYI RGATCY 3 cut(s) 811, 977, 1141
BstZI CGGCCG 1 cut(s) 111
Bsu15I ATCGAT 1 cut(s) 1188
BsuI GTATCC 1 cut(s) 922
BsuRI GGCC 7 cut(s) 113, 279, 291, 432, 677, 762, 1032
BsuTUI ATCGAT 1 cut(s) 1188
BtsCI GGATG 6 cut(s) 161, 517, 605, 708, 808, 1093
BtsIMutI CAGTG 2 cut(s) 477, 933
Cac8I GCNNGC 1 cut(s) 730
CciI TCATGA 2 cut(s) 220, 1123
CfoI GCGC 1 cut(s) 708
Cfr13I GGNCC 1 cut(s) 431
ClaI ATCGAT 1 cut(s) 1188
Csp6I GTAC 4 cut(s) 475, 615, 850, 1021
CviAII CATG 9 cut(s) 221, 323, 688, 764, 799, 827, 1070, 1124, 1135
CviQI GTAC 4 cut(s) 475, 615, 850, 1021
DdeI CTNAG 4 cut(s) 145, 435, 449, 984
DpnI GATC 6 cut(s) 225, 813, 979, 1122, 1143, 1187
DpnII GATC 6 cut(s) 223, 811, 977, 1120, 1141, 1185
EaeI YGGCCR 4 cut(s) 111, 289, 675, 760
EagI CGGCCG 1 cut(s) 111
Eam1104I CTCTTC 2 cut(s) 99, 1119
EarI CTCTTC 2 cut(s) 99, 1119
Ecl136II GAGCTC 2 cut(s) 439, 796
EclXI CGGCCG 1 cut(s) 111
Eco130I CCWWGG 2 cut(s) 427, 819
Eco24I GRGCYC 3 cut(s) 441, 697, 798
Eco31I GGTCTC 1 cut(s) 317
Eco52I CGGCCG 1 cut(s) 111
Eco53kI GAGCTC 2 cut(s) 439, 796
Eco57I CTGAAG 2 cut(s) 873, 957
EcoICRI GAGCTC 2 cut(s) 439, 796
EcoO109I RGGNCCY 1 cut(s) 431
EcoRI GAATTC 1 cut(s) 465
EcoT14I CCWWGG 2 cut(s) 427, 819
EcoT22I ATGCAT 1 cut(s) 919
EcoT38I GRGCYC 3 cut(s) 441, 697, 798
ErhI CCWWGG 2 cut(s) 427, 819
FaeI CATG 9 cut(s) 224, 326, 691, 767, 802, 830, 1073, 1127, 1138
FaqI GGGAC 1 cut(s) 649
FatI CATG 9 cut(s) 220, 322, 687, 763, 798, 826, 1069, 1123, 1134
FauI CCCGC 1 cut(s) 218
FbaI TGATCA 2 cut(s) 223, 1120
FblI GTMKAC 1 cut(s) 579
Fnu4HI GCNGC 5 cut(s) 93, 111, 398, 879, 882
FokI GGATG 6 cut(s) 148, 504, 592, 715, 815, 1100
FriOI GRGCYC 3 cut(s) 441, 697, 798
Fsp4HI GCNGC 5 cut(s) 93, 111, 398, 879, 882
FspBI CTAG 2 cut(s) 428, 633
GlaI GCGC 1 cut(s) 707
GluI GCNGC 5 cut(s) 93, 111, 398, 879, 882
GsuI CTGGAG 1 cut(s) 136
HaeIII GGCC 7 cut(s) 113, 279, 291, 432, 677, 762, 1032
HapII CCGG 3 cut(s) 649, 674, 853
HhaI GCGC 1 cut(s) 708
Hin1II CATG 9 cut(s) 224, 326, 691, 767, 802, 830, 1073, 1127, 1138
Hin6I GCGC 1 cut(s) 706
HinP1I GCGC 1 cut(s) 706
HincII GTYRAC 1 cut(s) 580
HindII GTYRAC 1 cut(s) 580
HindIII AAGCTT 1 cut(s) 1059
HinfI GANTC 5 cut(s) 149, 202, 246, 444, 1091
HpaII CCGG 3 cut(s) 649, 674, 853
HphI GGTGA 6 cut(s) 254, 365, 503, 618, 808, 871
Hpy166II GTNNAC 3 cut(s) 475, 580, 739
Hpy188III TCNNGA 8 cut(s) 133, 153, 221, 791, 891, 1010, 1118, 1124
Hpy8I GTNNAC 3 cut(s) 475, 580, 739
HpyAV CCTTC 3 cut(s) 190, 802, 1123
HpyCH4III ACNGT 3 cut(s) 311, 614, 859
HpyCH4IV ACGT 1 cut(s) 682
HpyCH4V TGCA 6 cut(s) 17, 37, 95, 844, 917, 1069
HpyF10VI GCNNNNNNNGC 4 cut(s) 397, 403, 412, 1038
HpyF3I CTNAG 4 cut(s) 145, 435, 449, 984
HpySE526I ACGT 1 cut(s) 682
Hsp92II CATG 9 cut(s) 224, 326, 691, 767, 802, 830, 1073, 1127, 1138
HspAI GCGC 1 cut(s) 706
Ksp22I TGATCA 2 cut(s) 223, 1120
Kzo9I GATC 6 cut(s) 223, 811, 977, 1120, 1141, 1185
LmnI GCTCC 2 cut(s) 4, 1038
Lsp1109I GCAGC 3 cut(s) 79, 409, 890
LweI GCATC 2 cut(s) 693, 926
MaeI CTAG 2 cut(s) 428, 633
MaeII ACGT 1 cut(s) 682
MaeIII GTNAC 2 cut(s) 299, 635
MalI GATC 6 cut(s) 225, 813, 979, 1122, 1143, 1187
MboI GATC 6 cut(s) 223, 811, 977, 1120, 1141, 1185
MflI RGATCY 3 cut(s) 811, 977, 1141
MhlI GDGCHC 3 cut(s) 441, 697, 798
MlsI TGGCCA 2 cut(s) 291, 762
MluCI AATT 5 cut(s) 39, 465, 529, 571, 1042
MluNI TGGCCA 2 cut(s) 291, 762
MlyI GAGTC 1 cut(s) 143
MmeI TCCRAC 7 cut(s) 59, 198, 210, 230, 258, 264, 633
Mox20I TGGCCA 2 cut(s) 291, 762
Mph1103I ATGCAT 1 cut(s) 919
MscI TGGCCA 2 cut(s) 291, 762
MseI TTAA 4 cut(s) 558, 620, 831, 1154
MslI CAYNNNNRTG 1 cut(s) 803
Msp20I TGGCCA 2 cut(s) 291, 762
MspA1I CMGCKG 1 cut(s) 881
MspCI CTTAAG 1 cut(s) 1153
MspI CCGG 3 cut(s) 649, 674, 853
MwoI GCNNNNNNNGC 4 cut(s) 397, 403, 412, 1038
NdeII GATC 6 cut(s) 223, 811, 977, 1120, 1141, 1185
NlaIII CATG 9 cut(s) 224, 326, 691, 767, 802, 830, 1073, 1127, 1138
NlaIV GGNNCC 2 cut(s) 425, 1143
NmeAIII GCCGAG 1 cut(s) 139
NsiI ATGCAT 1 cut(s) 919
PagI TCATGA 2 cut(s) 220, 1123
PcsI WCGNNNNNNNCGW 2 cut(s) 732, 741
PfeI GAWTC 4 cut(s) 202, 246, 444, 1091
PkrI GCNGC 5 cut(s) 94, 112, 399, 880, 883
PleI GAGTC 1 cut(s) 143
PpsI GAGTC 1 cut(s) 143
Psp124BI GAGCTC 2 cut(s) 441, 798
PspN4I GGNNCC 2 cut(s) 425, 1143
PspPI GGNCC 1 cut(s) 431
PstI CTGCAG 2 cut(s) 97, 846
PsuI RGATCY 3 cut(s) 811, 977, 1141
RsaI GTAC 4 cut(s) 476, 616, 851, 1022
RsaNI GTAC 4 cut(s) 475, 615, 850, 1021
RseI CAYNNNNRTG 1 cut(s) 803
SacI GAGCTC 2 cut(s) 441, 798
SalI GTCGAC 1 cut(s) 578
SaqAI TTAA 4 cut(s) 558, 620, 831, 1154
SatI GCNGC 5 cut(s) 93, 111, 398, 879, 882
Sau3AI GATC 6 cut(s) 223, 811, 977, 1120, 1141, 1185
Sau96I GGNCC 1 cut(s) 431
ScaI AGTACT 1 cut(s) 1022
SchI GAGTC 1 cut(s) 143
SduI GDGCHC 3 cut(s) 441, 697, 798
SfaNI GCATC 2 cut(s) 693, 926
SfcI CTRYAG 2 cut(s) 93, 842
SmiMI CAYNNNNRTG 1 cut(s) 803
SmlI CTYRAG 3 cut(s) 791, 1008, 1153
SmoI CTYRAG 3 cut(s) 791, 1008, 1153
Sse9I AATT 5 cut(s) 39, 465, 529, 571, 1042
SsiI CCGC 3 cut(s) 110, 211, 881
SspI AATATT 2 cut(s) 556, 958
SspMI CTAG 2 cut(s) 428, 633
SstI GAGCTC 2 cut(s) 441, 798
StyI CCWWGG 2 cut(s) 427, 819
TaaI ACNGT 3 cut(s) 311, 614, 859
TaiI ACGT 1 cut(s) 685
TaqI TCGA 6 cut(s) 200, 387, 579, 653, 951, 1188
TaqII GACCGA 1 cut(s) 1012
TasI AATT 5 cut(s) 39, 465, 529, 571, 1042
TatI WGTACW 2 cut(s) 614, 1020
TauI GCSGC 2 cut(s) 113, 884
TfiI GAWTC 4 cut(s) 202, 246, 444, 1091
Tru1I TTAA 4 cut(s) 558, 620, 831, 1154
Tru9I TTAA 4 cut(s) 558, 620, 831, 1154
TscAI CASTG 2 cut(s) 477, 940
TseI GCWGC 3 cut(s) 92, 397, 878
TspDTI ATGAA 4 cut(s) 356, 497, 780, 924
TspRI CASTG 2 cut(s) 477, 940
Vha464I CTTAAG 1 cut(s) 1153
XapI RAATTY 2 cut(s) 465, 571
XmaJI CCTAGG 1 cut(s) 427
XmiI GTMKAC 1 cut(s) 579
XspI CTAG 2 cut(s) 428, 633
ZrmI AGTACT 1 cut(s) 1022
Zsp2I ATGCAT 1 cut(s) 919
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.