RchiOBHm_Chr7g0211731
MYB Family

Myb-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0003843
Physical Location & Seq
Forward (+)
28907956 .. 28913205
5250 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18942

Sequence Viewer

Length: 1215 bp
ATGGAGTTGTTCCCTGCACAGCCAGATTTGTCTCTGCAAATTAGCCCTCCAAACACCAAACCCACATCATCAGGTAGTTGGAGGAGAAGTGCAGAAGAAGAAGAGGCGGCCGAGGTGGATTTGGGGTTCTGGAAAAGAGCCTTAGACTCCAGAAACTCATCCATCTCCTCCGACACCTTCTCCGACCTCTCGCTATCGAATCCAACTCGCCTCTCTCATGATCAGTACTCCAACACCAACAGGATCAACCATTTCCATCACCAAAACCACTTCGGCCTCCAAAATGGCCATAATGGTAACACTAATGGTCTCCTTTTCCATGCCTTTCAGCAAAACCAGTTCCTAAACCCTCAACACCAACTCCATCATCACCAAAGGGTATTCGAGCAACAGCACCAGCAAGAACAACAAGGAGGGTACCTAGGCCCAGAGCTCGGGTTCTTGAGACCCATAAGAGGAATTCCAGTGTACCAGAACCCTCCTCCACCAAATCCTCATCTTCATCACCATCATCCTCCTCCTAATTTGTTCCCATTTTCTGCACAAAATATTAAGCCTAATCTAAATTTGGACGCTACCGCTACTTCTCTATCCTCATCCAACAGTACATTAAGCTCACCCTCCAGTAACCCATTTCTCCGGTCTAGGTTCTTGTCCCGTTTTCCTGCCAAACGTAGCATGAGAGCCCCTCGGATGCGGTGGACTACCACTCTACACGCTCGATTCGTTCACGCCGTTGAGCTGTTGGGTGGCCATGAAAGGGCTACACCAAAGTCAGTTCTTGAGCTCATGGATGTGAAAGATCTCACCTTGGCACATGTTAAATCTCATCTGCAGATGTACCGGACGGTGAAAACTACCGATAAAGCAGCGGCAACTTCAGGACAATCTGAACTGTATGAAAATGCATCATCAGGGGATACCACTGAAGATATAATGCTCGACAATATTAATCAGAACCCAACAAGGTCTTCCGAGCAGGGAAGACCAAATCATGCTCAAGATAAGGAGTACTATGGTGGCCTATGGAGCAATTCTTCAAGCAGAGAAGCTTGGTTACATGGAAATAAACCAAAGGATGATTCTGCTGGAAATATGCCATCTCTTCTTGATGATGAGAAGGACATGATGGATCCCAAAGACTTAAGAAGCAGCTTTGAGAGAATATCAGATATGATTTGTGTCTCTGAATGGGAGCTGGGGATGAAGAGATGA

Protein Analysis

404

Amino Acids

45.74

Weight (kDa)

6.66

Isoelectric Point (pI)

52.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 231 - 282 2.9e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 417
AccB1I GGYRCC 1 cut(s) 417
AciI CCGC 4 cut(s) 107, 579, 697, 872
AclWI GGATC 3 cut(s) 251, 1127, 1140
AcoI YGGCCR 3 cut(s) 108, 286, 751
AcsI RAATTY 2 cut(s) 459, 565
AcuI CTGAAG 2 cut(s) 864, 948
AfaI GTAC 6 cut(s) 227, 419, 470, 607, 842, 1013
AfiI CCNNNNNNNGG 3 cut(s) 434, 455, 760
AflII CTTAAG 1 cut(s) 1144
AflIII ACRYGT 1 cut(s) 817
AgsI TTSAA 1 cut(s) 1041
AjuI GAANNNNNNNTTGG 4 cut(s) 955, 987, 1066, 1098
AloI GAACNNNNNNTCC 2 cut(s) 110, 142
AluBI AGCT 7 cut(s) 433, 615, 742, 787, 1052, 1155, 1198
AluI AGCT 7 cut(s) 433, 615, 742, 787, 1052, 1155, 1198
Alw21I GWGCWC 2 cut(s) 435, 789
Alw26I GTCTC 4 cut(s) 36, 314, 439, 1189
AlwI GGATC 3 cut(s) 251, 1127, 1140
Ama87I CYCGRG 1 cut(s) 434
AoxI GGCC 6 cut(s) 108, 274, 286, 424, 751, 1021
ApeKI GCWGC 2 cut(s) 869, 1152
ApoI RAATTY 2 cut(s) 459, 565
AseI ATTAAT 1 cut(s) 951
Asp718I GGTACC 1 cut(s) 417
AspA2I CCTAGG 1 cut(s) 421
AspS9I GGNCC 1 cut(s) 425
AsuHPI GGTGA 6 cut(s) 251, 362, 497, 609, 799, 862
AvaI CYCGRG 1 cut(s) 434
AvrII CCTAGG 1 cut(s) 421
BalI TGGCCA 2 cut(s) 288, 753
BamHI GGATCC 1 cut(s) 1132
BanI GGYRCC 1 cut(s) 417
BanII GRGCYC 3 cut(s) 435, 688, 789
BarI GAAGNNNNNNTAC 2 cut(s) 1041, 1073
BbsI GAAGAC 2 cut(s) 963, 991
Bbv12I GWGCWC 2 cut(s) 435, 789
BbvI GCAGC 2 cut(s) 881, 1164
BccI CCATC 6 cut(s) 170, 264, 372, 516, 1108, 1123
BceAI ACGGC 1 cut(s) 719
BciVI GTATCC 1 cut(s) 913
BclI TGATCA 1 cut(s) 220
BcoDI GTCTC 4 cut(s) 36, 314, 439, 1189
BfaI CTAG 2 cut(s) 422, 645
BfmI CTRYAG 1 cut(s) 833
BfrI CTTAAG 1 cut(s) 1144
BfuI GTATCC 1 cut(s) 913
BglII AGATCT 1 cut(s) 802
BisI GCNGC 4 cut(s) 108, 870, 873, 1153
BlnI CCTAGG 1 cut(s) 421
BlsI GCNGC 4 cut(s) 109, 871, 874, 1154
BmcAI AGTACT 2 cut(s) 227, 1013
BmeT110I CYCGRG 1 cut(s) 434
BmgT120I GGNCC 1 cut(s) 425
BmiI GGNNCC 2 cut(s) 419, 1134
BmsI GCATC 2 cut(s) 684, 917
BpiI GAAGAC 2 cut(s) 963, 991
BplI GAGNNNNNCTC 2 cut(s) 673, 705
BpmI CTGGAG 2 cut(s) 133, 607
BpuEI CTTGAG 3 cut(s) 463, 803, 984
BsaI GGTCTC 2 cut(s) 314, 439
BsaJI CCNNGG 4 cut(s) 111, 421, 689, 810
BsaWI WCCGGW 2 cut(s) 639, 843
BsaXI ACNNNNNCTCC 6 cut(s) 73, 103, 164, 194, 345, 375
Bsc4I CCNNNNNNNGG 3 cut(s) 434, 455, 760
Bse1I ACTGG 3 cut(s) 337, 464, 624
BseDI CCNNGG 4 cut(s) 111, 421, 689, 810
BseGI GGATG 7 cut(s) 158, 511, 596, 699, 799, 1084, 1209
BseLI CCNNNNNNNGG 3 cut(s) 434, 455, 760
BseNI ACTGG 3 cut(s) 337, 464, 624
BseRI GAGGAG 4 cut(s) 97, 157, 471, 507
BseX3I CGGCCG 1 cut(s) 108
BseXI GCAGC 2 cut(s) 881, 1164
BseYI CCCAGC 1 cut(s) 1198
BsgI GTGCAG 2 cut(s) 111, 525
Bsh1285I CGRYCG 1 cut(s) 111
BshFI GGCC 6 cut(s) 110, 276, 288, 426, 753, 1023
BshNI GGYRCC 1 cut(s) 417
BsiEI CGRYCG 1 cut(s) 111
BsiHKAI GWGCWC 2 cut(s) 435, 789
BsiHKCI CYCGRG 1 cut(s) 434
BsiSI CCGG 2 cut(s) 640, 844
BslFI GGGAC 1 cut(s) 640
BslI CCNNNNNNNGG 3 cut(s) 434, 455, 760
BsmAI GTCTC 4 cut(s) 36, 314, 439, 1189
BsmFI GGGAC 1 cut(s) 640
BsnI GGCC 6 cut(s) 110, 276, 288, 426, 753, 1023
Bso31I GGTCTC 2 cut(s) 314, 439
BsoBI CYCGRG 1 cut(s) 434
Bsp1286I GDGCHC 3 cut(s) 435, 688, 789
Bsp143I GATC 4 cut(s) 220, 243, 802, 1132
BspACI CCGC 4 cut(s) 107, 579, 697, 872
BspANI GGCC 6 cut(s) 110, 276, 288, 426, 753, 1023
BspHI TCATGA 1 cut(s) 217
BspLI GGNNCC 2 cut(s) 419, 1134
BspMAI CTGCAG 1 cut(s) 837
BspPI GGATC 3 cut(s) 251, 1127, 1140
BspT107I GGYRCC 1 cut(s) 417
BspTI CTTAAG 1 cut(s) 1144
BspTNI GGTCTC 2 cut(s) 314, 439
BsrI ACTGG 3 cut(s) 337, 464, 624
BssECI CCNNGG 4 cut(s) 111, 421, 689, 810
BssMI GATC 4 cut(s) 220, 243, 802, 1132
BssT1I CCWWGG 2 cut(s) 421, 810
Bst4CI ACNGT 3 cut(s) 605, 850, 897
Bst6I CTCTTC 3 cut(s) 96, 1110, 1202
BstAFI CTTAAG 1 cut(s) 1144
BstDEI CTNAG 1 cut(s) 142
BstF5I GGATG 7 cut(s) 158, 511, 596, 699, 799, 1084, 1209
BstKTI GATC 4 cut(s) 223, 246, 805, 1135
BstMAI GTCTC 4 cut(s) 36, 314, 439, 1189
BstMBI GATC 4 cut(s) 220, 243, 802, 1132
BstMCI CGRYCG 1 cut(s) 111
BstMWI GCNNNNNNNGC 1 cut(s) 1029
BstNSI RCATGY 1 cut(s) 821
BstSFI CTRYAG 1 cut(s) 833
BstV1I GCAGC 2 cut(s) 881, 1164
BstV2I GAAGAC 2 cut(s) 963, 991
BstX2I RGATCY 2 cut(s) 802, 1132
BstYI RGATCY 2 cut(s) 802, 1132
BstZI CGGCCG 1 cut(s) 108
BsuI GTATCC 1 cut(s) 913
BsuRI GGCC 6 cut(s) 110, 276, 288, 426, 753, 1023
BtsCI GGATG 7 cut(s) 158, 511, 596, 699, 799, 1084, 1209
BtsIMutI CAGTG 2 cut(s) 471, 924
CciI TCATGA 1 cut(s) 217
Cfr13I GGNCC 1 cut(s) 425
CseI GACGC 1 cut(s) 581
Csp6I GTAC 6 cut(s) 226, 418, 469, 606, 841, 1012
CviAII CATG 9 cut(s) 218, 320, 679, 755, 790, 818, 995, 1061, 1126
CviQI GTAC 6 cut(s) 226, 418, 469, 606, 841, 1012
DdeI CTNAG 1 cut(s) 142
DpnI GATC 4 cut(s) 222, 245, 804, 1134
DpnII GATC 4 cut(s) 220, 243, 802, 1132
EaeI YGGCCR 3 cut(s) 108, 286, 751
EagI CGGCCG 1 cut(s) 108
Eam1104I CTCTTC 3 cut(s) 96, 1110, 1202
EarI CTCTTC 3 cut(s) 96, 1110, 1202
Ecl136II GAGCTC 2 cut(s) 433, 787
EclXI CGGCCG 1 cut(s) 108
Eco130I CCWWGG 2 cut(s) 421, 810
Eco24I GRGCYC 3 cut(s) 435, 688, 789
Eco31I GGTCTC 2 cut(s) 314, 439
Eco52I CGGCCG 1 cut(s) 108
Eco53kI GAGCTC 2 cut(s) 433, 787
Eco57I CTGAAG 2 cut(s) 864, 948
Eco88I CYCGRG 1 cut(s) 434
EcoICRI GAGCTC 2 cut(s) 433, 787
EcoRI GAATTC 1 cut(s) 459
EcoT14I CCWWGG 2 cut(s) 421, 810
EcoT22I ATGCAT 1 cut(s) 910
EcoT38I GRGCYC 3 cut(s) 435, 688, 789
ErhI CCWWGG 2 cut(s) 421, 810
FaeI CATG 9 cut(s) 221, 323, 682, 758, 793, 821, 998, 1064, 1129
FaqI GGGAC 1 cut(s) 640
FatI CATG 9 cut(s) 217, 319, 678, 754, 789, 817, 994, 1060, 1125
FbaI TGATCA 1 cut(s) 220
Fnu4HI GCNGC 4 cut(s) 108, 870, 873, 1153
FokI GGATG 6 cut(s) 145, 498, 583, 706, 806, 1091
FriOI GRGCYC 3 cut(s) 435, 688, 789
Fsp4HI GCNGC 4 cut(s) 108, 870, 873, 1153
FspBI CTAG 2 cut(s) 422, 645
GluI GCNGC 4 cut(s) 108, 870, 873, 1153
GsaI CCCAGC 1 cut(s) 1202
GsuI CTGGAG 2 cut(s) 133, 607
HaeIII GGCC 6 cut(s) 110, 276, 288, 426, 753, 1023
HapII CCGG 2 cut(s) 640, 844
HgaI GACGC 1 cut(s) 581
Hin1II CATG 9 cut(s) 221, 323, 682, 758, 793, 821, 998, 1064, 1129
HindIII AAGCTT 1 cut(s) 1050
HinfI GANTC 4 cut(s) 146, 199, 723, 1082
HpaII CCGG 2 cut(s) 640, 844
HphI GGTGA 6 cut(s) 251, 362, 497, 609, 799, 862
Hpy166II GTNNAC 3 cut(s) 469, 702, 730
Hpy188I TCNGA 8 cut(s) 172, 184, 693, 892, 957, 976, 1171, 1189
Hpy188III TCNNGA 8 cut(s) 130, 150, 218, 442, 782, 882, 1001, 1109
Hpy8I GTNNAC 3 cut(s) 469, 702, 730
HpyAV CCTTC 2 cut(s) 187, 1114
HpyCH4III ACNGT 3 cut(s) 605, 850, 897
HpyCH4IV ACGT 1 cut(s) 673
HpyCH4V TGCA 6 cut(s) 17, 37, 92, 542, 835, 908
HpyF10VI GCNNNNNNNGC 1 cut(s) 1029
HpyF3I CTNAG 1 cut(s) 142
HpySE526I ACGT 1 cut(s) 673
Hsp92II CATG 9 cut(s) 221, 323, 682, 758, 793, 821, 998, 1064, 1129
KpnI GGTACC 1 cut(s) 421
Ksp22I TGATCA 1 cut(s) 220
Kzo9I GATC 4 cut(s) 220, 243, 802, 1132
LmnI GCTCC 2 cut(s) 1029, 1195
Lsp1109I GCAGC 2 cut(s) 881, 1164
LweI GCATC 2 cut(s) 684, 917
MaeI CTAG 2 cut(s) 422, 645
MaeII ACGT 1 cut(s) 673
MaeIII GTNAC 3 cut(s) 296, 626, 1056
MalI GATC 4 cut(s) 222, 245, 804, 1134
MboI GATC 4 cut(s) 220, 243, 802, 1132
MboII GAAGA 9 cut(s) 107, 110, 113, 491, 941, 963, 996, 1029, 1097
MflI RGATCY 2 cut(s) 802, 1132
MhlI GDGCHC 3 cut(s) 435, 688, 789
MlsI TGGCCA 2 cut(s) 288, 753
MluCI AATT 5 cut(s) 39, 459, 523, 565, 1033
MluNI TGGCCA 2 cut(s) 288, 753
MlyI GAGTC 1 cut(s) 140
MmeI TCCRAC 6 cut(s) 59, 195, 207, 227, 255, 624
Mox20I TGGCCA 2 cut(s) 288, 753
Mph1103I ATGCAT 1 cut(s) 910
MscI TGGCCA 2 cut(s) 288, 753
MseI TTAA 5 cut(s) 552, 611, 822, 951, 1145
MslI CAYNNNNRTG 1 cut(s) 794
Msp20I TGGCCA 2 cut(s) 288, 753
MspA1I CMGCKG 1 cut(s) 872
MspCI CTTAAG 1 cut(s) 1144
MspI CCGG 2 cut(s) 640, 844
MwoI GCNNNNNNNGC 1 cut(s) 1029
NdeII GATC 4 cut(s) 220, 243, 802, 1132
NlaIII CATG 9 cut(s) 221, 323, 682, 758, 793, 821, 998, 1064, 1129
NlaIV GGNNCC 2 cut(s) 419, 1134
NmeAIII GCCGAG 1 cut(s) 136
NsiI ATGCAT 1 cut(s) 910
NspI RCATGY 1 cut(s) 821
PagI TCATGA 1 cut(s) 217
PciI ACATGT 1 cut(s) 817
PcsI WCGNNNNNNNCGW 2 cut(s) 723, 732
PfeI GAWTC 3 cut(s) 199, 723, 1082
PkrI GCNGC 4 cut(s) 109, 871, 874, 1154
PleI GAGTC 1 cut(s) 140
PpsI GAGTC 1 cut(s) 140
PscI ACATGT 1 cut(s) 817
PshBI ATTAAT 1 cut(s) 951
Psp124BI GAGCTC 2 cut(s) 435, 789
PspFI CCCAGC 1 cut(s) 1198
PspN4I GGNNCC 2 cut(s) 419, 1134
PspPI GGNCC 1 cut(s) 425
PstI CTGCAG 1 cut(s) 837
PsuI RGATCY 2 cut(s) 802, 1132
RsaI GTAC 6 cut(s) 227, 419, 470, 607, 842, 1013
RsaNI GTAC 6 cut(s) 226, 418, 469, 606, 841, 1012
RseI CAYNNNNRTG 1 cut(s) 794
SacI GAGCTC 2 cut(s) 435, 789
SaqAI TTAA 5 cut(s) 552, 611, 822, 951, 1145
SatI GCNGC 4 cut(s) 108, 870, 873, 1153
Sau3AI GATC 4 cut(s) 220, 243, 802, 1132
Sau96I GGNCC 1 cut(s) 425
ScaI AGTACT 2 cut(s) 227, 1013
SchI GAGTC 1 cut(s) 140
SduI GDGCHC 3 cut(s) 435, 688, 789
SfaNI GCATC 2 cut(s) 684, 917
SfcI CTRYAG 1 cut(s) 833
SmiMI CAYNNNNRTG 1 cut(s) 794
SmlI CTYRAG 4 cut(s) 442, 782, 999, 1144
SmoI CTYRAG 4 cut(s) 442, 782, 999, 1144
Sse9I AATT 5 cut(s) 39, 459, 523, 565, 1033
SsiI CCGC 4 cut(s) 107, 579, 697, 872
SspI AATATT 2 cut(s) 550, 949
SspMI CTAG 2 cut(s) 422, 645
SstI GAGCTC 2 cut(s) 435, 789
StyI CCWWGG 2 cut(s) 421, 810
TaaI ACNGT 3 cut(s) 605, 850, 897
TaiI ACGT 1 cut(s) 676
TaqI TCGA 4 cut(s) 197, 384, 721, 942
TasI AATT 5 cut(s) 39, 459, 523, 565, 1033
TatI WGTACW 3 cut(s) 225, 605, 1011
TauI GCSGC 2 cut(s) 110, 875
TfiI GAWTC 3 cut(s) 199, 723, 1082
Tru1I TTAA 5 cut(s) 552, 611, 822, 951, 1145
Tru9I TTAA 5 cut(s) 552, 611, 822, 951, 1145
TscAI CASTG 2 cut(s) 471, 931
TseI GCWGC 2 cut(s) 869, 1152
TspDTI ATGAA 3 cut(s) 491, 771, 915
TspRI CASTG 2 cut(s) 471, 931
Vha464I CTTAAG 1 cut(s) 1144
VspI ATTAAT 1 cut(s) 951
XapI RAATTY 2 cut(s) 459, 565
XceI RCATGY 1 cut(s) 821
XmaJI CCTAGG 1 cut(s) 421
XspI CTAG 2 cut(s) 422, 645
ZrmI AGTACT 2 cut(s) 227, 1013
Zsp2I ATGCAT 1 cut(s) 910
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.