Rmu_sc0001875.1_g000015
MYB Family

Myb-like DNA-binding domain

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001875.1
Physical Location & Seq
Forward (+)
90429 .. 96853
6425 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001875.1_g000015.1.cds

Sequence Viewer

Length: 1500 bp
atggagttgttccctgcacagccagatttgtctctgcaaattagccctccaaacaccaaacccacatcatcaggtagttggaggagaagtgcagaagaagaagaggcggccgaggtggatttggggttctggaaaagagccttagactccagaaactcatccatctcctccgacaccttctccgacctctcgctatcgaatccaactcgcctttctcatgatcagtactccaacaccaacaggatcaaccatttccatcaccaaaaccacttcggcctccaaaatggccataatggtaacactaatggtctccttttccatgcctttcagcaaaaccagttcctaaaccctcaacaccaactccatcatcaccaaagggtattcgatcaacagcaccagcaagaacaacaaggagggtacctaggcccagagcttgggttcttgagacccataagaggaattccagtgtaccagaaccctcctccatcaaatcctcatcttcatcaccatcatcctcctcctaatttgttcccattttctgcacaaaatattaagcctaatctaaatttggacgctaccgctacttctctatcctcatccaacagtacattaagctcaccctccagtaacccatttctccggtctaggttcttgtcccgttttcctgccaaacgtagcatgagagcccctcggatgcggtggactaccactctacacgctcgattcgttcacgccgttgagctgttgggtggccatgaaagggctacaccaaagtcagttcttgagctcatggatgtgaaagatctcaccttggcacatgttaaatctcatctgcagatgtaccggacggtgaaaactaccgataaagcagcggcaacttcaggacaatctgaactgtatgaaaatgcatcatcaggggataccactgaagatataatgttcgacaatattaatcagaacccaacaaggtcttccgagcagggaagaccaaatcatgctcaagataaggagtactatggtggcctatggagcaattcttcaagagaagcttggttgcatggaaataaaccaaaggatgattctgctggaaatatgccatctcttcttgatgatgagaaggacatgatggatcccaaagacttaagaagcaactttgagagaatatcagataatgtagatgctttggcatgcaaagctgccggacacttagtgcagcaatatgagctttctccggtgagctttgaatgtgattgtctaggggcagtcaatgctatttcttcttcatgtgagaatacctcgatcttgggaaggatctatgatgatatttcaagttgtttggagactttaccaggttcaagtttttcttatatctgtagagatgctaacatggtagcccataagctggctaagtttgcactagtttcagattttaacttgtattggagtgggtttgttcccatggagattagtggcttcttagccacgctatgtacacaatag

Protein Analysis

499

Amino Acids

55.87

Weight (kDa)

6.22

Isoelectric Point (pI)

51.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 417
AccB1I GGYRCC 1 cut(s) 417
AccB7I CCANNNNNTGG 2 cut(s) 434, 1402
AciI CCGC 4 cut(s) 107, 579, 697, 872
AclWI GGATC 4 cut(s) 251, 1124, 1137, 1319
AcoI YGGCCR 3 cut(s) 108, 286, 751
AcsI RAATTY 2 cut(s) 459, 565
AcuI CTGAAG 2 cut(s) 864, 948
AdeI CACNNNGTG 1 cut(s) 1210
AfaI GTAC 7 cut(s) 227, 419, 470, 607, 842, 1013, 1492
AfiI CCNNNNNNNGG 4 cut(s) 434, 455, 760, 1402
AflII CTTAAG 1 cut(s) 1141
AflIII ACRYGT 1 cut(s) 817
AgsI TTSAA 4 cut(s) 1041, 1244, 1329, 1356
AhlI ACTAGT 1 cut(s) 1417
AjnI CCWGG 1 cut(s) 1348
AjuI GAANNNNNNNTTGG 6 cut(s) 196, 228, 955, 987, 1063, 1095
AloI GAACNNNNNNTCC 2 cut(s) 110, 142
AluBI AGCT 9 cut(s) 433, 615, 742, 787, 1049, 1196, 1225, 1239, 1402
AluI AGCT 9 cut(s) 433, 615, 742, 787, 1049, 1196, 1225, 1239, 1402
Alw21I GWGCWC 1 cut(s) 789
Alw26I GTCTC 4 cut(s) 36, 314, 439, 1334
AlwI GGATC 4 cut(s) 251, 1124, 1137, 1319
AoxI GGCC 6 cut(s) 108, 274, 286, 424, 751, 1021
ApeKI GCWGC 3 cut(s) 869, 1196, 1213
ApoI RAATTY 2 cut(s) 459, 565
AseI ATTAAT 1 cut(s) 951
Asp718I GGTACC 1 cut(s) 417
AspA2I CCTAGG 1 cut(s) 421
AspS9I GGNCC 1 cut(s) 425
AsuHPI GGTGA 7 cut(s) 251, 362, 497, 609, 799, 862, 1246
AvrII CCTAGG 1 cut(s) 421
BalI TGGCCA 2 cut(s) 288, 753
BamHI GGATCC 1 cut(s) 1129
BanI GGYRCC 1 cut(s) 417
BanII GRGCYC 2 cut(s) 688, 789
BbsI GAAGAC 2 cut(s) 963, 991
Bbv12I GWGCWC 1 cut(s) 789
BbvI GCAGC 3 cut(s) 881, 1183, 1225
BccI CCATC 7 cut(s) 170, 264, 372, 493, 516, 1105, 1120
BceAI ACGGC 1 cut(s) 719
BciT130I CCWGG 1 cut(s) 1350
BciVI GTATCC 1 cut(s) 913
BclI TGATCA 1 cut(s) 220
BcoDI GTCTC 4 cut(s) 36, 314, 439, 1334
BcuI ACTAGT 1 cut(s) 1417
BfaI CTAG 4 cut(s) 422, 645, 1256, 1418
BfmI CTRYAG 2 cut(s) 833, 1372
BfrI CTTAAG 1 cut(s) 1141
BfuI GTATCC 1 cut(s) 913
BglII AGATCT 1 cut(s) 802
BisI GCNGC 5 cut(s) 108, 870, 873, 1197, 1214
BlnI CCTAGG 1 cut(s) 421
BlsI GCNGC 5 cut(s) 109, 871, 874, 1198, 1215
BmcAI AGTACT 2 cut(s) 227, 1013
Bme1390I CCNGG 1 cut(s) 1350
BmgT120I GGNCC 1 cut(s) 425
BmiI GGNNCC 2 cut(s) 419, 1131
BmrFI CCNGG 1 cut(s) 1350
BmsI GCATC 4 cut(s) 684, 917, 1168, 1369
BpiI GAAGAC 2 cut(s) 963, 991
BplI GAGNNNNNCTC 4 cut(s) 673, 705, 1280, 1312
BpmI CTGGAG 2 cut(s) 133, 607
BpuEI CTTGAG 3 cut(s) 463, 803, 984
BsaI GGTCTC 2 cut(s) 314, 439
BsaJI CCNNGG 5 cut(s) 111, 421, 689, 810, 1458
BsaWI WCCGGW 3 cut(s) 639, 843, 1231
BsaXI ACNNNNNCTCC 6 cut(s) 73, 103, 164, 194, 345, 375
Bsc4I CCNNNNNNNGG 4 cut(s) 434, 455, 760, 1402
Bse1I ACTGG 3 cut(s) 337, 464, 624
BseBI CCWGG 1 cut(s) 1350
BseDI CCNNGG 5 cut(s) 111, 421, 689, 810, 1458
BseGI GGATG 6 cut(s) 158, 511, 596, 699, 799, 1081
BseLI CCNNNNNNNGG 4 cut(s) 434, 455, 760, 1402
BseNI ACTGG 3 cut(s) 337, 464, 624
BseRI GAGGAG 4 cut(s) 97, 157, 471, 507
BseX3I CGGCCG 1 cut(s) 108
BseXI GCAGC 3 cut(s) 881, 1183, 1225
BsgI GTGCAG 3 cut(s) 111, 525, 1232
Bsh1285I CGRYCG 1 cut(s) 111
BshFI GGCC 6 cut(s) 110, 276, 288, 426, 753, 1023
BshNI GGYRCC 1 cut(s) 417
BsiEI CGRYCG 1 cut(s) 111
BsiHKAI GWGCWC 1 cut(s) 789
BsiSI CCGG 4 cut(s) 640, 844, 1200, 1232
BslFI GGGAC 1 cut(s) 640
BslI CCNNNNNNNGG 4 cut(s) 434, 455, 760, 1402
BsmAI GTCTC 4 cut(s) 36, 314, 439, 1334
BsmFI GGGAC 1 cut(s) 640
BsnI GGCC 6 cut(s) 110, 276, 288, 426, 753, 1023
Bso31I GGTCTC 2 cut(s) 314, 439
Bsp1286I GDGCHC 2 cut(s) 688, 789
Bsp1407I TGTACA 1 cut(s) 1490
Bsp143I GATC 7 cut(s) 220, 243, 385, 802, 1129, 1299, 1311
Bsp19I CCATGG 1 cut(s) 1458
BspACI CCGC 4 cut(s) 107, 579, 697, 872
BspANI GGCC 6 cut(s) 110, 276, 288, 426, 753, 1023
BspHI TCATGA 1 cut(s) 217
BspLI GGNNCC 2 cut(s) 419, 1131
BspMAI CTGCAG 1 cut(s) 837
BspPI GGATC 4 cut(s) 251, 1124, 1137, 1319
BspT107I GGYRCC 1 cut(s) 417
BspTI CTTAAG 1 cut(s) 1141
BspTNI GGTCTC 2 cut(s) 314, 439
BsrGI TGTACA 1 cut(s) 1490
BsrI ACTGG 3 cut(s) 337, 464, 624
BssECI CCNNGG 5 cut(s) 111, 421, 689, 810, 1458
BssMI GATC 7 cut(s) 220, 243, 385, 802, 1129, 1299, 1311
BssT1I CCWWGG 3 cut(s) 421, 810, 1458
Bst2UI CCWGG 1 cut(s) 1350
Bst4CI ACNGT 3 cut(s) 605, 850, 897
Bst6I CTCTTC 2 cut(s) 96, 1107
BstAFI CTTAAG 1 cut(s) 1141
BstAPI GCANNNNNTGC 1 cut(s) 1268
BstAUI TGTACA 1 cut(s) 1490
BstC8I GCNNGC 2 cut(s) 1189, 1404
BstDEI CTNAG 4 cut(s) 142, 1207, 1407, 1477
BstDSI CCRYGG 1 cut(s) 1458
BstF5I GGATG 6 cut(s) 158, 511, 596, 699, 799, 1081
BstKTI GATC 7 cut(s) 223, 246, 388, 805, 1132, 1302, 1314
BstMAI GTCTC 4 cut(s) 36, 314, 439, 1334
BstMBI GATC 7 cut(s) 220, 243, 385, 802, 1129, 1299, 1311
BstMCI CGRYCG 1 cut(s) 111
BstMWI GCNNNNNNNGC 5 cut(s) 1029, 1193, 1222, 1268, 1412
BstNI CCWGG 1 cut(s) 1350
BstNSI RCATGY 2 cut(s) 821, 1191
BstSCI CCNGG 1 cut(s) 1348
BstSFI CTRYAG 2 cut(s) 833, 1372
BstV1I GCAGC 3 cut(s) 881, 1183, 1225
BstV2I GAAGAC 2 cut(s) 963, 991
BstX2I RGATCY 3 cut(s) 802, 1129, 1311
BstYI RGATCY 3 cut(s) 802, 1129, 1311
BstZI CGGCCG 1 cut(s) 108
BsuI GTATCC 1 cut(s) 913
BsuRI GGCC 6 cut(s) 110, 276, 288, 426, 753, 1023
BtgI CCRYGG 1 cut(s) 1458
BtsCI GGATG 6 cut(s) 158, 511, 596, 699, 799, 1081
BtsIMutI CAGTG 2 cut(s) 471, 924
Cac8I GCNNGC 2 cut(s) 1189, 1404
CciI TCATGA 1 cut(s) 217
Cfr13I GGNCC 1 cut(s) 425
CseI GACGC 1 cut(s) 581
CsiI ACCWGGT 1 cut(s) 1348
Csp6I GTAC 7 cut(s) 226, 418, 469, 606, 841, 1012, 1491
CviQI GTAC 7 cut(s) 226, 418, 469, 606, 841, 1012, 1491
DdeI CTNAG 4 cut(s) 142, 1207, 1407, 1477
DpnI GATC 7 cut(s) 222, 245, 387, 804, 1131, 1301, 1313
DpnII GATC 7 cut(s) 220, 243, 385, 802, 1129, 1299, 1311
DraIII CACNNNGTG 1 cut(s) 1210
EaeI YGGCCR 3 cut(s) 108, 286, 751
EagI CGGCCG 1 cut(s) 108
Eam1104I CTCTTC 2 cut(s) 96, 1107
EarI CTCTTC 2 cut(s) 96, 1107
Ecl136II GAGCTC 1 cut(s) 787
EclXI CGGCCG 1 cut(s) 108
Eco130I CCWWGG 3 cut(s) 421, 810, 1458
Eco24I GRGCYC 2 cut(s) 688, 789
Eco31I GGTCTC 2 cut(s) 314, 439
Eco52I CGGCCG 1 cut(s) 108
Eco53kI GAGCTC 1 cut(s) 787
Eco57I CTGAAG 2 cut(s) 864, 948
EcoICRI GAGCTC 1 cut(s) 787
EcoRI GAATTC 1 cut(s) 459
EcoRII CCWGG 1 cut(s) 1348
EcoT14I CCWWGG 3 cut(s) 421, 810, 1458
EcoT22I ATGCAT 1 cut(s) 910
EcoT38I GRGCYC 2 cut(s) 688, 789
ErhI CCWWGG 3 cut(s) 421, 810, 1458
FalI AAGNNNNNCTT 4 cut(s) 1033, 1065, 1348, 1380
FaqI GGGAC 1 cut(s) 640
FbaI TGATCA 1 cut(s) 220
Fnu4HI GCNGC 5 cut(s) 108, 870, 873, 1197, 1214
FokI GGATG 6 cut(s) 145, 498, 583, 706, 806, 1088
FriOI GRGCYC 2 cut(s) 688, 789
Fsp4HI GCNGC 5 cut(s) 108, 870, 873, 1197, 1214
FspBI CTAG 4 cut(s) 422, 645, 1256, 1418
GluI GCNGC 5 cut(s) 108, 870, 873, 1197, 1214
GsuI CTGGAG 2 cut(s) 133, 607
HaeIII GGCC 6 cut(s) 110, 276, 288, 426, 753, 1023
HapII CCGG 4 cut(s) 640, 844, 1200, 1232
HgaI GACGC 1 cut(s) 581
HindIII AAGCTT 1 cut(s) 1047
HinfI GANTC 4 cut(s) 146, 199, 723, 1079
HpaII CCGG 4 cut(s) 640, 844, 1200, 1232
HphI GGTGA 7 cut(s) 251, 362, 497, 609, 799, 862, 1246
Hpy166II GTNNAC 4 cut(s) 469, 702, 730, 1493
Hpy188I TCNGA 8 cut(s) 172, 184, 693, 892, 957, 976, 1168, 1426
Hpy188III TCNNGA 9 cut(s) 130, 150, 218, 442, 782, 882, 1001, 1041, 1106
Hpy8I GTNNAC 4 cut(s) 469, 702, 730, 1493
HpyAV CCTTC 3 cut(s) 187, 1111, 1302
HpyCH4III ACNGT 3 cut(s) 605, 850, 897
HpyCH4IV ACGT 1 cut(s) 673
HpyF10VI GCNNNNNNNGC 5 cut(s) 1029, 1193, 1222, 1268, 1412
HpyF3I CTNAG 4 cut(s) 142, 1207, 1407, 1477
HpySE526I ACGT 1 cut(s) 673
KpnI GGTACC 1 cut(s) 421
Ksp22I TGATCA 1 cut(s) 220
Kzo9I GATC 7 cut(s) 220, 243, 385, 802, 1129, 1299, 1311
LmnI GCTCC 1 cut(s) 1029
Lsp1109I GCAGC 3 cut(s) 881, 1183, 1225
LweI GCATC 4 cut(s) 684, 917, 1168, 1369
MabI ACCWGGT 1 cut(s) 1348
MaeI CTAG 4 cut(s) 422, 645, 1256, 1418
MaeII ACGT 1 cut(s) 673
MaeIII GTNAC 2 cut(s) 296, 626
MalI GATC 7 cut(s) 222, 245, 387, 804, 1131, 1301, 1313
MboI GATC 7 cut(s) 220, 243, 385, 802, 1129, 1299, 1311
MflI RGATCY 3 cut(s) 802, 1129, 1311
MhlI GDGCHC 2 cut(s) 688, 789
MlsI TGGCCA 2 cut(s) 288, 753
MluCI AATT 5 cut(s) 39, 459, 523, 565, 1033
MluNI TGGCCA 2 cut(s) 288, 753
MlyI GAGTC 1 cut(s) 140
MmeI TCCRAC 6 cut(s) 59, 195, 207, 227, 255, 624
Mox20I TGGCCA 2 cut(s) 288, 753
Mph1103I ATGCAT 1 cut(s) 910
MscI TGGCCA 2 cut(s) 288, 753
MseI TTAA 6 cut(s) 552, 611, 822, 951, 1142, 1431
MslI CAYNNNNRTG 1 cut(s) 794
Msp20I TGGCCA 2 cut(s) 288, 753
MspA1I CMGCKG 1 cut(s) 872
MspCI CTTAAG 1 cut(s) 1141
MspI CCGG 4 cut(s) 640, 844, 1200, 1232
MspR9I CCNGG 1 cut(s) 1350
MvaI CCWGG 1 cut(s) 1350
MwoI GCNNNNNNNGC 5 cut(s) 1029, 1193, 1222, 1268, 1412
NcoI CCATGG 1 cut(s) 1458
NdeII GATC 7 cut(s) 220, 243, 385, 802, 1129, 1299, 1311
NlaIV GGNNCC 2 cut(s) 419, 1131
NmeAIII GCCGAG 1 cut(s) 136
NsiI ATGCAT 1 cut(s) 910
NspI RCATGY 2 cut(s) 821, 1191
PaeI GCATGC 1 cut(s) 1191
PagI TCATGA 1 cut(s) 217
PciI ACATGT 1 cut(s) 817
PcsI WCGNNNNNNNCGW 2 cut(s) 723, 732
PfeI GAWTC 3 cut(s) 199, 723, 1079
PflMI CCANNNNNTGG 2 cut(s) 434, 1402
PkrI GCNGC 5 cut(s) 109, 871, 874, 1198, 1215
PleI GAGTC 1 cut(s) 140
PpsI GAGTC 1 cut(s) 140
PscI ACATGT 1 cut(s) 817
PshBI ATTAAT 1 cut(s) 951
Psp124BI GAGCTC 1 cut(s) 789
Psp6I CCWGG 1 cut(s) 1348
PspGI CCWGG 1 cut(s) 1348
PspN4I GGNNCC 2 cut(s) 419, 1131
PspPI GGNCC 1 cut(s) 425
PstI CTGCAG 1 cut(s) 837
PsuI RGATCY 3 cut(s) 802, 1129, 1311
RsaI GTAC 7 cut(s) 227, 419, 470, 607, 842, 1013, 1492
RsaNI GTAC 7 cut(s) 226, 418, 469, 606, 841, 1012, 1491
RseI CAYNNNNRTG 1 cut(s) 794
SacI GAGCTC 1 cut(s) 789
SaqAI TTAA 6 cut(s) 552, 611, 822, 951, 1142, 1431
SatI GCNGC 5 cut(s) 108, 870, 873, 1197, 1214
Sau3AI GATC 7 cut(s) 220, 243, 385, 802, 1129, 1299, 1311
Sau96I GGNCC 1 cut(s) 425
ScaI AGTACT 2 cut(s) 227, 1013
SchI GAGTC 1 cut(s) 140
ScrFI CCNGG 1 cut(s) 1350
SduI GDGCHC 2 cut(s) 688, 789
SexAI ACCWGGT 1 cut(s) 1348
SfaNI GCATC 4 cut(s) 684, 917, 1168, 1369
SfcI CTRYAG 2 cut(s) 833, 1372
SmiMI CAYNNNNRTG 1 cut(s) 794
SmlI CTYRAG 4 cut(s) 442, 782, 999, 1141
SmoI CTYRAG 4 cut(s) 442, 782, 999, 1141
SpeI ACTAGT 1 cut(s) 1417
SphI GCATGC 1 cut(s) 1191
Sse9I AATT 5 cut(s) 39, 459, 523, 565, 1033
SsiI CCGC 4 cut(s) 107, 579, 697, 872
SspI AATATT 2 cut(s) 550, 949
SspMI CTAG 4 cut(s) 422, 645, 1256, 1418
SstI GAGCTC 1 cut(s) 789
StyD4I CCNGG 1 cut(s) 1348
StyI CCWWGG 3 cut(s) 421, 810, 1458
TaaI ACNGT 3 cut(s) 605, 850, 897
TaiI ACGT 1 cut(s) 676
TaqI TCGA 5 cut(s) 197, 384, 721, 942, 1298
TasI AATT 5 cut(s) 39, 459, 523, 565, 1033
TatI WGTACW 4 cut(s) 225, 605, 1011, 1490
TauI GCSGC 2 cut(s) 110, 875
TfiI GAWTC 3 cut(s) 199, 723, 1079
Tru1I TTAA 6 cut(s) 552, 611, 822, 951, 1142, 1431
Tru9I TTAA 6 cut(s) 552, 611, 822, 951, 1142, 1431
TscAI CASTG 2 cut(s) 471, 931
TseI GCWGC 3 cut(s) 869, 1196, 1213
TspDTI ATGAA 4 cut(s) 491, 771, 915, 1272
TspRI CASTG 2 cut(s) 471, 931
Van91I CCANNNNNTGG 2 cut(s) 434, 1402
Vha464I CTTAAG 1 cut(s) 1141
VspI ATTAAT 1 cut(s) 951
XapI RAATTY 2 cut(s) 459, 565
XceI RCATGY 2 cut(s) 821, 1191
XmaJI CCTAGG 1 cut(s) 421
XspI CTAG 4 cut(s) 422, 645, 1256, 1418
ZrmI AGTACT 2 cut(s) 227, 1013
Zsp2I ATGCAT 1 cut(s) 910
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.