Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0003843

Physical Location & Seq

Genomic Coordinates Forward (+)

10074464 .. 10078462

Gene Structure 3999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0127700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGGCAGTGTCAACGCAGCTTCACTCACTTACCAGTGTTGCTTCATTGACTCACCGCACCAAGGTCAAGTTTAACAGCGCCTGCTGCGCAGCTCTGTTTCCCAATGCAAAGCAAACAAGCCCATCCACGCTTTGCAGTGCCGTGCAGAGTTCACAGTCCACTGTTTCTGAGAGATCAAACCCACCACTTACTTCCTTCAATAAGTTGATTGAGTCCTTGATTGATAAGGTGGATTTGTCGGAGTCCGAAGCCGAAGCTTCATTGGAGTTCTTGCTGAGTGATGCTAATGAGGCTTTGATTAGCGCCTTTCTTGTGTTGTTGAGAGCCAAAGGAGAGACTTATGAAGAAATTGTGGGATTAGCAAAGGCAATGATAAAGCACAGTTTGAAGATTGAGGGCTTGGATGACGCAGTTGACATTGTTGGAACTGGTGGTGACGGAGCAAACACAGTAAACATTTCAACCGGGGCTTCAATACTTGCTGCAGCTTGTGGTGCAAAAGTTGCAAAGCAAGGTAATCGTTCAAGTTCCTCTGCATGTGGAAGTGCAGATGTATTGGAAGCTTTGGGAATAATAATTGACTTGGACCCTGAGGGGGTCGCGAGATGTGTTAATGAAGTAGGGATTGGTTTTATGATGGCACCAAAGTATCATCCAGCAATGAATGTCGTTCGTCCTGTAAGGAAAAAGCTAAAAGTAAAGACTGTATTCAACATTTTGGGACCTATGTTGAATCCAGCTAGAGTTCCTTTTGCTGTTGTTGGTGTATACAAGGAAGAATTAGTCCTAAAGATGGCTAAAGCATTACAAAGCTTTGGCATGAAGAGAGCATTGGTTGTTCACTCAGAGGGCTTGGACGAAATGAGTCCCCTTGGACCTGGACATATCCTTAATGTGACTCCTAATAAGATTGAGAAGTTCTCCTTTGATCCATTGGACTTTGGAATTCCTCGATGCACTATAGATGATTTGCGAGGTGGAGATCCAAAGTATAACGCTGAGGCATTAAAGCGCGTATTATCAGGAGAGAAAGGTTCCATGGCAGATGCGTTTATCCTAAATGCAGCAGCAGCTCTTTTAGTCAGCGGCCGTGTAAACACTTTGGCTGAAGGAGTTTCTTTGGCTCGTGAGACACAACTTTCAGGAAAAGCTATCAAGACGCTTGATCAATGGGTATCTCTCTCGAATACAATGAGGAAAGATACAGTTATTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009791 GO:0009798 GO:0009889 GO:0009908 GO:0009943 GO:0009944 GO:0009955 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065001 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

405

Amino Acids

42.95

Weight (kDa)

7.58

Isoelectric Point (pI)

40.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glycos_trans_3N	PF02885	68 - 127	2.4e-15	Glycosyl transferase family, helical bundle domain
Glycos_transf_3	PF00591	135 - 384	8e-99	Glycosyl transferase family, a/b domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003843)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32240 AT1G32240 AT1G32240
fragaria_vesca	FvH4_5g22990 FvH4_5g22990 FvH4_5g22990 FvH4_5g22990 FvH4_5g22990 FvH4_5g22990 FvH4_5g22990 FvH4_5g22990
malus_domestica	MD06G1026200.v1.1 MD16G1279800.v1.1
prunus_persica	Prupe.5G028400_v2.0.a1 Prupe.5G028400_v2.0.a1 Prupe.5G028400_v2.0.a1 Prupe.5G028400_v2.0.a1 Prupe.5G028400_v2.0.a1 Prupe.5G028400_v2.0.a1
pyrus_communis	pycom06g02130 pycom16g25010
rosa_chinensis	RchiOBHm_Chr7g0211731
rosa_laevigata	RLG00000002974
rosa_multiflora	Rmu_sc0001875.1_g000015
rosa_roxburghii	Rroxscaffold_3G00247530
rosa_rugosa	Rorug07G0127500 Rorug07G0127600 Rorug07G0127700 Rorug07G0127800
rosa_samantha	Rh7AG260700 Rh7BG253900 Rh7CG277200 Rh7DG267300
rosa_wichuraiana	Rw7G022220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	88
AccB1I	GGYRCC	1 cut(s)	640
AccI	GTMKAC	1 cut(s)	768
AccII	CGCG	2 cut(s)	602, 1014
AciI	CCGC	2 cut(s)	55, 1086
AclWI	GGATC	2 cut(s)	923, 977
AcoI	YGGCCR	1 cut(s)	1087
AcsI	RAATTY	1 cut(s)	945
AcuI	CTGAAG	1 cut(s)	1128
AfiI	CCNNNNNNNGG	3 cut(s)	61, 595, 793
AgsI	TTSAA	7 cut(s)	199, 388, 462, 474, 525, 712, 733
AjnI	CCWGG	1 cut(s)	877
AjuI	GAANNNNNNNTTGG	4 cut(s)	609, 641, 815, 847
Alw26I	GTCTC	2 cut(s)	329, 1124
AlwI	GGATC	2 cut(s)	923, 977
AlwNI	CAGNNNCTG	1 cut(s)	81
AoxI	GGCC	1 cut(s)	1087
ApeKI	GCWGC	8 cut(s)	16, 84, 89, 482, 485, 1064, 1067, 1070
ApoI	RAATTY	1 cut(s)	945
AspLEI	GCGC	4 cut(s)	80, 89, 305, 1014
AspS9I	GGNCC	3 cut(s)	586, 722, 875
AsuC2I	CCSGG	1 cut(s)	466
AsuHPI	GGTGA	2 cut(s)	44, 446
AvaII	GGWCC	3 cut(s)	586, 722, 875
AxyI	CCTNAGG	1 cut(s)	591
BaeI	ACNNNNGTAYC	2 cut(s)	632, 665
BanI	GGYRCC	1 cut(s)	640
BauI	CACGAG	1 cut(s)	1125
BbvCI	CCTCAGC	1 cut(s)	999
BbvI	GCAGC	8 cut(s)	28, 71, 101, 469, 497, 1076, 1079, 1082
BccI	CCATC	3 cut(s)	130, 631, 787
BceAI	ACGGC	2 cut(s)	125, 1074
BcgI	CGANNNNNNTGC	2 cut(s)	500, 534
BciT130I	CCWGG	1 cut(s)	879
BclI	TGATCA	1 cut(s)	1165
BcnI	CCSGG	1 cut(s)	466
BcoDI	GTCTC	2 cut(s)	329, 1124
BfaI	CTAG	1 cut(s)	741
BfmI	CTRYAG	2 cut(s)	483, 960
BfoI	RGCGCY	2 cut(s)	81, 306
BisI	GCNGC	9 cut(s)	17, 85, 90, 483, 486, 1065, 1068, 1071, 1087
BlsI	GCNGC	9 cut(s)	18, 86, 91, 484, 487, 1066, 1069, 1072, 1088
Bme1390I	CCNGG	2 cut(s)	466, 879
Bme18I	GGWCC	3 cut(s)	586, 722, 875
BmgT120I	GGNCC	3 cut(s)	586, 722, 875
BmiI	GGNNCC	4 cut(s)	588, 642, 723, 1036
BmrFI	CCNGG	2 cut(s)	466, 879
BmsI	GCATC	3 cut(s)	271, 944, 1036
BplI	GAGNNNNNCTC	2 cut(s)	905, 937
Bpu10I	CCTNAGC	1 cut(s)	999
BpuMI	CCSGG	1 cut(s)	466
BsaJI	CCNNGG	4 cut(s)	60, 465, 871, 1038
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 595, 793
Bse1I	ACTGG	2 cut(s)	33, 433
Bse21I	CCTNAGG	1 cut(s)	591
Bse3DI	GCAATG	2 cut(s)	375, 666
BseBI	CCWGG	1 cut(s)	879
BseDI	CCNNGG	4 cut(s)	60, 465, 871, 1038
BseGI	GGATG	3 cut(s)	122, 409, 652
BseLI	CCNNNNNNNGG	3 cut(s)	61, 595, 793
BseMI	GCAATG	2 cut(s)	375, 666
BseMII	CTCAG	5 cut(s)	159, 266, 582, 858, 990
BseNI	ACTGG	2 cut(s)	33, 433
BseX3I	CGGCCG	1 cut(s)	1087
BseXI	GCAGC	8 cut(s)	28, 71, 101, 469, 497, 1076, 1079, 1082
BsgI	GTGCAG	2 cut(s)	164, 567
Bsh1236I	CGCG	2 cut(s)	602, 1014
Bsh1285I	CGRYCG	1 cut(s)	1090
BshFI	GGCC	1 cut(s)	1089
BshNI	GGYRCC	1 cut(s)	640
BsiEI	CGRYCG	1 cut(s)	1090
BsiSI	CCGG	1 cut(s)	465
BslFI	GGGAC	2 cut(s)	735, 852
BslI	CCNNNNNNNGG	3 cut(s)	61, 595, 793
BsmAI	GTCTC	2 cut(s)	329, 1124
BsmFI	GGGAC	2 cut(s)	735, 852
BsnI	GGCC	1 cut(s)	1089
Bsp143I	GATC	4 cut(s)	173, 928, 982, 1165
Bsp19I	CCATGG	1 cut(s)	1038
Bsp68I	TCGCGA	1 cut(s)	602
BspACI	CCGC	2 cut(s)	55, 1086
BspANI	GGCC	1 cut(s)	1089
BspCNI	CTCAG	5 cut(s)	160, 267, 583, 857, 991
BspFNI	CGCG	2 cut(s)	602, 1014
BspLI	GGNNCC	4 cut(s)	588, 642, 723, 1036
BspMAI	CTGCAG	1 cut(s)	487
BspPI	GGATC	2 cut(s)	923, 977
BspT107I	GGYRCC	1 cut(s)	640
BsrDI	GCAATG	2 cut(s)	375, 666
BsrI	ACTGG	2 cut(s)	33, 433
BssECI	CCNNGG	4 cut(s)	60, 465, 871, 1038
BssMI	GATC	4 cut(s)	173, 928, 982, 1165
BssNAI	GTATAC	1 cut(s)	769
BssSI	CACGAG	1 cut(s)	1125
BssT1I	CCWWGG	3 cut(s)	60, 871, 1038
Bst1107I	GTATAC	1 cut(s)	769
Bst2BI	CACGAG	1 cut(s)	1125
Bst2UI	CCWGG	1 cut(s)	879
Bst4CI	ACNGT	6 cut(s)	156, 163, 383, 451, 706, 1207
Bst6I	CTCTTC	1 cut(s)	818
BstAPI	GCANNNNNTGC	1 cut(s)	503
BstC8I	GCNNGC	1 cut(s)	82
BstDEI	CTNAG	5 cut(s)	168, 275, 591, 844, 999
BstDSI	CCRYGG	1 cut(s)	1038
BstF5I	GGATG	3 cut(s)	122, 409, 652
BstFNI	CGCG	2 cut(s)	602, 1014
BstH2I	RGCGCY	2 cut(s)	81, 306
BstHHI	GCGC	4 cut(s)	80, 89, 305, 1014
BstKTI	GATC	4 cut(s)	176, 931, 985, 1168
BstMAI	GTCTC	2 cut(s)	329, 1124
BstMBI	GATC	4 cut(s)	173, 928, 982, 1165
BstMCI	CGRYCG	1 cut(s)	1090
BstMWI	GCNNNNNNNGC	6 cut(s)	84, 86, 290, 494, 503, 1070
BstNI	CCWGG	1 cut(s)	879
BstNSI	RCATGY	1 cut(s)	540
BstSCI	CCNGG	2 cut(s)	464, 877
BstSFI	CTRYAG	2 cut(s)	483, 960
BstUI	CGCG	2 cut(s)	602, 1014
BstV1I	GCAGC	8 cut(s)	28, 71, 101, 469, 497, 1076, 1079, 1082
BstX2I	RGATCY	1 cut(s)	982
BstYI	RGATCY	1 cut(s)	982
BstZ17I	GTATAC	1 cut(s)	769
BstZI	CGGCCG	1 cut(s)	1087
Bsu36I	CCTNAGG	1 cut(s)	591
BsuRI	GGCC	1 cut(s)	1089
BtgI	CCRYGG	1 cut(s)	1038
BtsCI	GGATG	3 cut(s)	122, 409, 652
BtsI	GCAGTG	2 cut(s)	12, 142
BtsIMutI	CAGTG	4 cut(s)	12, 40, 142, 159
BtuMI	TCGCGA	1 cut(s)	602
Cac8I	GCNNGC	1 cut(s)	82
CaiI	CAGNNNCTG	1 cut(s)	81
CfoI	GCGC	4 cut(s)	80, 89, 305, 1014
Cfr13I	GGNCC	3 cut(s)	586, 722, 875
CseI	GACGC	2 cut(s)	416, 1168
CviAII	CATG	3 cut(s)	537, 820, 1039
DdeI	CTNAG	5 cut(s)	168, 275, 591, 844, 999
DpnI	GATC	4 cut(s)	175, 930, 984, 1167
DpnII	GATC	4 cut(s)	173, 928, 982, 1165
EaeI	YGGCCR	1 cut(s)	1087
EagI	CGGCCG	1 cut(s)	1087
Eam1104I	CTCTTC	1 cut(s)	818
EarI	CTCTTC	1 cut(s)	818
EclXI	CGGCCG	1 cut(s)	1087
Eco130I	CCWWGG	3 cut(s)	60, 871, 1038
Eco47I	GGWCC	3 cut(s)	586, 722, 875
Eco52I	CGGCCG	1 cut(s)	1087
Eco57I	CTGAAG	1 cut(s)	1128
Eco81I	CCTNAGG	1 cut(s)	591
EcoO109I	RGGNCCY	1 cut(s)	722
EcoRI	GAATTC	1 cut(s)	945
EcoRII	CCWGG	1 cut(s)	877
EcoT14I	CCWWGG	3 cut(s)	60, 871, 1038
ErhI	CCWWGG	3 cut(s)	60, 871, 1038
FaeI	CATG	3 cut(s)	540, 823, 1042
FalI	AAGNNNNNCTT	2 cut(s)	908, 940
FaqI	GGGAC	2 cut(s)	735, 852
FatI	CATG	3 cut(s)	536, 819, 1038
FbaI	TGATCA	1 cut(s)	1165
FblI	GTMKAC	1 cut(s)	768
Fnu4HI	GCNGC	9 cut(s)	17, 85, 90, 483, 486, 1065, 1068, 1071, 1087
FokI	GGATG	3 cut(s)	109, 416, 639
Fsp4HI	GCNGC	9 cut(s)	17, 85, 90, 483, 486, 1065, 1068, 1071, 1087
FspBI	CTAG	1 cut(s)	741
FspI	TGCGCA	1 cut(s)	88
GlaI	GCGC	4 cut(s)	79, 88, 304, 1013
GluI	GCNGC	9 cut(s)	17, 85, 90, 483, 486, 1065, 1068, 1071, 1087
HaeII	RGCGCY	2 cut(s)	81, 306
HaeIII	GGCC	1 cut(s)	1089
HapII	CCGG	1 cut(s)	465
HgaI	GACGC	2 cut(s)	416, 1168
HhaI	GCGC	4 cut(s)	80, 89, 305, 1014
Hin1II	CATG	3 cut(s)	540, 823, 1042
Hin6I	GCGC	4 cut(s)	78, 87, 303, 1012
HinP1I	GCGC	4 cut(s)	78, 87, 303, 1012
HincII	GTYRAC	2 cut(s)	12, 415
HindII	GTYRAC	2 cut(s)	12, 415
HindIII	AAGCTT	3 cut(s)	255, 561, 811
HinfI	GANTC	6 cut(s)	49, 212, 242, 733, 865, 898
HpaII	CCGG	1 cut(s)	465
HphI	GGTGA	2 cut(s)	44, 446
Hpy166II	GTNNAC	8 cut(s)	12, 152, 159, 415, 454, 769, 841, 1096
Hpy188I	TCNGA	4 cut(s)	169, 241, 247, 847
Hpy188III	TCNNGA	6 cut(s)	601, 1023, 1127, 1143, 1156, 1183
Hpy8I	GTNNAC	8 cut(s)	12, 152, 159, 415, 454, 769, 841, 1096
HpyAV	CCTTC	2 cut(s)	205, 1103
HpyCH4III	ACNGT	6 cut(s)	156, 163, 383, 451, 706, 1207
HpyF10VI	GCNNNNNNNGC	6 cut(s)	84, 86, 290, 494, 503, 1070
HpyF3I	CTNAG	5 cut(s)	168, 275, 591, 844, 999
Hsp92II	CATG	3 cut(s)	540, 823, 1042
HspAI	GCGC	4 cut(s)	78, 87, 303, 1012
Ksp22I	TGATCA	1 cut(s)	1165
Kzo9I	GATC	4 cut(s)	173, 928, 982, 1165
LmnI	GCTCC	1 cut(s)	440
Lsp1109I	GCAGC	8 cut(s)	28, 71, 101, 469, 497, 1076, 1079, 1082
LweI	GCATC	3 cut(s)	271, 944, 1036
MaeI	CTAG	1 cut(s)	741
MaeIII	GTNAC	2 cut(s)	434, 895
MalI	GATC	4 cut(s)	175, 930, 984, 1167
MboI	GATC	4 cut(s)	173, 928, 982, 1165
MboII	GAAGA	4 cut(s)	356, 400, 788, 835
MflI	RGATCY	1 cut(s)	982
MluCI	AATT	4 cut(s)	348, 576, 779, 945
MlyI	GAGTC	5 cut(s)	43, 221, 251, 874, 892
MmeI	TCCRAC	2 cut(s)	219, 403
MnlI	CCTC	9 cut(s)	283, 388, 541, 586, 841, 960, 968, 994, 1188
MseI	TTAA	5 cut(s)	72, 612, 891, 1007, 1216
MspA1I	CMGCKG	1 cut(s)	1086
MspI	CCGG	1 cut(s)	465
MspR9I	CCNGG	2 cut(s)	466, 879
MvaI	CCWGG	1 cut(s)	879
MvnI	CGCG	2 cut(s)	602, 1014
MwoI	GCNNNNNNNGC	6 cut(s)	84, 86, 290, 494, 503, 1070
NciI	CCSGG	1 cut(s)	466
NcoI	CCATGG	1 cut(s)	1038
NdeII	GATC	4 cut(s)	173, 928, 982, 1165
NlaIII	CATG	3 cut(s)	540, 823, 1042
NlaIV	GGNNCC	4 cut(s)	588, 642, 723, 1036
NmuCI	GTSAC	2 cut(s)	434, 895
NruI	TCGCGA	1 cut(s)	602
NsbI	TGCGCA	1 cut(s)	88
NspI	RCATGY	1 cut(s)	540
PfeI	GAWTC	1 cut(s)	733
PkrI	GCNGC	9 cut(s)	18, 86, 91, 484, 487, 1066, 1069, 1072, 1088
PleI	GAGTC	5 cut(s)	43, 220, 250, 873, 892
PpsI	GAGTC	5 cut(s)	43, 220, 250, 873, 892
PpuMI	RGGWCCY	1 cut(s)	722
Psp5II	RGGWCCY	1 cut(s)	722
Psp6I	CCWGG	1 cut(s)	877
PspGI	CCWGG	1 cut(s)	877
PspN4I	GGNNCC	4 cut(s)	588, 642, 723, 1036
PspPI	GGNCC	3 cut(s)	586, 722, 875
PspPPI	RGGWCCY	1 cut(s)	722
PstI	CTGCAG	1 cut(s)	487
PstNI	CAGNNNCTG	1 cut(s)	81
PsuI	RGATCY	1 cut(s)	982
RruI	TCGCGA	1 cut(s)	602
SaqAI	TTAA	5 cut(s)	72, 612, 891, 1007, 1216
SatI	GCNGC	9 cut(s)	17, 85, 90, 483, 486, 1065, 1068, 1071, 1087
Sau3AI	GATC	4 cut(s)	173, 928, 982, 1165
Sau96I	GGNCC	3 cut(s)	586, 722, 875
SchI	GAGTC	5 cut(s)	43, 221, 251, 874, 892
ScrFI	CCNGG	2 cut(s)	466, 879
SfaNI	GCATC	3 cut(s)	271, 944, 1036
SfcI	CTRYAG	2 cut(s)	483, 960
SinI	GGWCC	3 cut(s)	586, 722, 875
Sse9I	AATT	4 cut(s)	348, 576, 779, 945
SsiI	CCGC	2 cut(s)	55, 1086
SspMI	CTAG	1 cut(s)	741
StyD4I	CCNGG	2 cut(s)	464, 877
StyI	CCWWGG	3 cut(s)	60, 871, 1038
TaaI	ACNGT	6 cut(s)	156, 163, 383, 451, 706, 1207
TaqI	TCGA	2 cut(s)	952, 1184
TasI	AATT	4 cut(s)	348, 576, 779, 945
TauI	GCSGC	1 cut(s)	1089
TfiI	GAWTC	1 cut(s)	733
Tru1I	TTAA	5 cut(s)	72, 612, 891, 1007, 1216
Tru9I	TTAA	5 cut(s)	72, 612, 891, 1007, 1216
TscAI	CASTG	4 cut(s)	12, 40, 142, 166
TseFI	GTSAC	2 cut(s)	434, 895
TseI	GCWGC	8 cut(s)	16, 84, 89, 482, 485, 1064, 1067, 1070
Tsp45I	GTSAC	2 cut(s)	434, 895
TspDTI	ATGAA	6 cut(s)	33, 249, 357, 630, 677, 836
TspGWI	ACGGA	1 cut(s)	453
TspRI	CASTG	4 cut(s)	12, 40, 142, 166
VpaK11BI	GGWCC	3 cut(s)	586, 722, 875
XapI	RAATTY	1 cut(s)	945
XceI	RCATGY	1 cut(s)	540
XmiI	GTMKAC	1 cut(s)	768
XspI	CTAG	1 cut(s)	741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.