AT1G32500

Uncharacterized protein family (UPF0051)

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
11749798 .. 11752190
2393 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G32500.1

Sequence Viewer

Length: 1428 bp
ATGGCGGCTGCCACAGTTCTCGGTCGCTTATCACTGATACCAAATCTATCATCTAAACCAAAATTGAAATCTAACAGAAGAACAACTTCCACAAGTGTTTCTGTTCGTGCACAAGCTTCGTTCTCTGACCCTTTTGTACTTCAATTAGCTGAATCTCTCGAAGATTCTCTCTCAGCTTCTCCTTCTTCTTCTTTACCTCTTCAAAGAATCCGTGATTCTTCCGCTGAGACTCTTTTATCTACGCCATGGCCGTCACGAAAAGACGAACCTTTCCGATTCACCGATACATCTTTAATCCGATCTTCTCAAATCGAACCAATTTCGACCCAGCAACGAAATTCGGAAATTTTGGATAATCTGACGGAAACCCAGTTCACAAACGCTGTGATTATTGATGGGTTCGTGTCGAATTTGACGATTGGTCCATCGGATTTGCCCGATGGGGTTTACTTCGGGAAATATTCTGGTTTACCGGATGAGTTAACGAACCGGATTTCTGAGTTTATCGGGAATTTTGATTCTGGTGATTTGTTTTGGTCGATTAATGGTATGGGAGCACCGGATTTGATGGTGATTTATGTTCCTGAAGGATGTAAGGTCGAGAATCCGATTTATTTGAGGTACTTTTCTGGTGAAACTGGTGACCGGGAATCGAAACGGTTACCGGTATCGAATCCTAGGGTTTTTGTGTTAGTGGAGGAAGGAGGAGAGATTGGTATCGTTGAGGAATTTGTTGGTAAAGATGAAGAAGGGTTTTATTGGACGAATCCTGTTTTGGAAGTTGTTGTTCAAAAGAATGCGAAATTGAAGCATTCTTATTTGCAGAAAGAATCCATGGCTTCTGCTCATATCAAGTGGACTTTTGTCCGACAGGAGGCAGAGAGTGAATATGAGCTTGTGGAAGTGAGTACTGGTGGGAAACTTGGGAGGCACAATGTTCATGTGCAGCAGCTTGGGCCTGATACGCTCACAGAGCTAACCACGTTTCATATGTGTGTCAACGAGCAGACTCTTGATCTCCATAGCAAAATTATCTTAGACCATCCACGAGGCGCTTCACGACAGCTTCACAAGTGTATTGTTGCTCATTCCTCTGGTCAAGCTGTTTTCGATGGCAATGTCCGAGTTAACAGATTCGCTCAACAGACCAACGCGGGACAACTAACACGGAGCCTCCTTCTGAAACCCCGAGCCACCGTGAACATAAAACCGAATCTTCAGATCATTGCAGATGATGTCAAATGCTCTCATGGAGCTGCTATCAGTGATCTTGAAGAAGACCAGCTCTTCTATTTCCAAGCTCGTGGGATCGACTTGGAGACTGCAAGAAGAGCTCTCATATCGTCTTTTGGATCAGAGGTTATCGAGAAGTTTCCAAATCGGGAAATCAGAGACCAAGCCAGGAATCACGTCAAAGGCTTGCTCTGA

Protein Analysis

475

Amino Acids

52.82

Weight (kDa)

5.66

Isoelectric Point (pI)

39.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SufBD_N PF19295 62 - 205 2.1e-06 SufBD protein N-terminal region
SUFBD_core PF01458 222 - 450 1.1e-67 SUF system FeS cluster assembly, SufBD core domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1154
AciI CCGC 3 cut(s) 5, 222, 1154
AclWI GGATC 2 cut(s) 1316, 1360
AcoI YGGCCR 1 cut(s) 248
AcsI RAATTY 5 cut(s) 337, 345, 409, 511, 728
AcuI CTGAAG 2 cut(s) 606, 1202
AfaI GTAC 3 cut(s) 138, 623, 910
AfiI CCNNNNNNNGG 1 cut(s) 874
AgeI ACCGGT 1 cut(s) 664
AgsI TTSAA 6 cut(s) 67, 143, 203, 791, 808, 1274
AhdI GACNNNNNGTC 1 cut(s) 420
AjiI CACGTC 1 cut(s) 1411
AjnI CCWGG 1 cut(s) 1400
AjuI GAANNNNNNNTTGG 2 cut(s) 758, 790
AloI GAACNNNNNNTCC 2 cut(s) 356, 388
Alw21I GWGCWC 3 cut(s) 112, 559, 1336
Alw26I GTCTC 3 cut(s) 221, 1313, 1386
Alw44I GTGCAC 1 cut(s) 108
AlwI GGATC 2 cut(s) 1316, 1360
Ama87I CYCGRG 1 cut(s) 1188
AoxI GGCC 2 cut(s) 248, 956
ApaLI GTGCAC 1 cut(s) 108
ApeKI GCWGC 4 cut(s) 8, 946, 949, 1256
ApoI RAATTY 5 cut(s) 337, 345, 409, 511, 728
AseI ATTAAT 1 cut(s) 543
AsiGI ACCGGT 1 cut(s) 664
Asp700I GAANNNNTTC 1 cut(s) 85
AspA2I CCTAGG 1 cut(s) 677
AspLEI GCGC 1 cut(s) 1055
AspS9I GGNCC 2 cut(s) 422, 956
AsuC2I CCSGG 1 cut(s) 647
AsuHPI GGTGA 5 cut(s) 271, 536, 583, 644, 653
AvaI CYCGRG 1 cut(s) 1188
AvaII GGWCC 1 cut(s) 422
AvrII CCTAGG 1 cut(s) 677
BaeGI GKGCMC 1 cut(s) 112
BanII GRGCYC 1 cut(s) 1336
BauI CACGAG 2 cut(s) 1047, 1302
BbsI GAAGAC 1 cut(s) 1284
Bbv12I GWGCWC 3 cut(s) 112, 559, 1336
BbvI GCAGC 3 cut(s) 958, 961, 1243
BccI CCATC 6 cut(s) 389, 433, 434, 562, 1050, 1106
BceAI ACGGC 1 cut(s) 235
BcgI CGANNNNNNTGC 2 cut(s) 99, 133
BciT130I CCWGG 1 cut(s) 1402
BcnI CCSGG 1 cut(s) 647
BcoDI GTCTC 3 cut(s) 221, 1313, 1386
BfaI CTAG 1 cut(s) 678
BfoI RGCGCY 1 cut(s) 1056
BisI GCNGC 5 cut(s) 6, 9, 947, 950, 1257
BlnI CCTAGG 1 cut(s) 677
BlsI GCNGC 5 cut(s) 7, 10, 948, 951, 1258
BmcAI AGTACT 1 cut(s) 910
Bme1390I CCNGG 2 cut(s) 647, 1402
Bme18I GGWCC 1 cut(s) 422
BmeRI GACNNNNNGTC 1 cut(s) 420
BmeT110I CYCGRG 1 cut(s) 1188
BmgBI CACGTC 1 cut(s) 1411
BmgT120I GGNCC 2 cut(s) 422, 956
BmiI GGNNCC 1 cut(s) 1172
BmrFI CCNGG 2 cut(s) 647, 1402
BmrI ACTGGG 1 cut(s) 364
BmuI ACTGGG 1 cut(s) 364
BoxI GACNNNNGTC 1 cut(s) 863
BpiI GAAGAC 1 cut(s) 1284
BpuMI CCSGG 1 cut(s) 647
BsaBI GATNNNNATC 1 cut(s) 716
BsaI GGTCTC 1 cut(s) 1386
BsaJI CCNNGG 3 cut(s) 245, 677, 834
BsaWI WCCGGW 4 cut(s) 472, 489, 559, 664
BsaXI ACNNNNNCTCC 2 cut(s) 1158, 1188
Bsc4I CCNNNNNNNGG 1 cut(s) 874
Bse118I RCCGGY 1 cut(s) 664
Bse1I ACTGG 3 cut(s) 370, 643, 916
Bse3DI GCAATG 2 cut(s) 1123, 1224
Bse8I GATNNNNATC 1 cut(s) 716
BseBI CCWGG 1 cut(s) 1402
BseDI CCNNGG 3 cut(s) 245, 677, 834
BseGI GGATG 3 cut(s) 481, 596, 1042
BseJI GATNNNNATC 1 cut(s) 716
BseLI CCNNNNNNNGG 1 cut(s) 874
BseMI GCAATG 2 cut(s) 1123, 1224
BseMII CTCAG 3 cut(s) 186, 216, 489
BseNI ACTGG 3 cut(s) 370, 643, 916
BseRI GAGGAG 1 cut(s) 720
BseSI GKGCMC 1 cut(s) 112
BseXI GCAGC 3 cut(s) 958, 961, 1243
BseYI CCCAGC 1 cut(s) 327
BsgI GTGCAG 1 cut(s) 965
Bsh1236I CGCG 1 cut(s) 1154
Bsh1285I CGRYCG 1 cut(s) 25
BshFI GGCC 2 cut(s) 250, 958
BshTI ACCGGT 1 cut(s) 664
BsiEI CGRYCG 1 cut(s) 25
BsiHKAI GWGCWC 3 cut(s) 112, 559, 1336
BsiHKCI CYCGRG 1 cut(s) 1188
BsiSI CCGG 5 cut(s) 473, 490, 560, 646, 665
BslFI GGGAC 1 cut(s) 1170
BslI CCNNNNNNNGG 1 cut(s) 874
BsmAI GTCTC 3 cut(s) 221, 1313, 1386
BsmFI GGGAC 1 cut(s) 1170
BsmI GAATGC 2 cut(s) 802, 811
BsnI GGCC 2 cut(s) 250, 958
Bso31I GGTCTC 1 cut(s) 1386
BsoBI CYCGRG 1 cut(s) 1188
Bsp1286I GDGCHC 3 cut(s) 112, 559, 1336
Bsp143I GATC 6 cut(s) 299, 1015, 1221, 1267, 1308, 1352
Bsp19I CCATGG 2 cut(s) 245, 834
BspACI CCGC 3 cut(s) 5, 222, 1154
BspANI GGCC 2 cut(s) 250, 958
BspCNI CTCAG 3 cut(s) 185, 217, 490
BspFNI CGCG 1 cut(s) 1154
BspLI GGNNCC 1 cut(s) 1172
BspPI GGATC 2 cut(s) 1316, 1360
BspQI GCTCTTC 2 cut(s) 1292, 1324
BspTNI GGTCTC 1 cut(s) 1386
BsrDI GCAATG 2 cut(s) 1123, 1224
BsrFI RCCGGY 1 cut(s) 664
BsrI ACTGG 3 cut(s) 370, 643, 916
BssAI RCCGGY 1 cut(s) 664
BssECI CCNNGG 3 cut(s) 245, 677, 834
BssMI GATC 6 cut(s) 299, 1015, 1221, 1267, 1308, 1352
BssSI CACGAG 2 cut(s) 1047, 1302
BssT1I CCWWGG 3 cut(s) 245, 677, 834
Bst2BI CACGAG 2 cut(s) 1047, 1302
Bst2UI CCWGG 1 cut(s) 1402
Bst4CI ACNGT 3 cut(s) 16, 660, 1198
Bst6I CTCTTC 3 cut(s) 204, 1292, 1324
BstC8I GCNNGC 1 cut(s) 1421
BstDEI CTNAG 4 cut(s) 172, 225, 498, 1036
BstDSI CCRYGG 2 cut(s) 245, 834
BstEII GGTNACC 2 cut(s) 641, 660
BstF5I GGATG 3 cut(s) 481, 596, 1042
BstFNI CGCG 1 cut(s) 1154
BstH2I RGCGCY 1 cut(s) 1056
BstHHI GCGC 1 cut(s) 1055
BstKTI GATC 6 cut(s) 302, 1018, 1224, 1270, 1311, 1355
BstMAI GTCTC 3 cut(s) 221, 1313, 1386
BstMBI GATC 6 cut(s) 299, 1015, 1221, 1267, 1308, 1352
BstMCI CGRYCG 1 cut(s) 25
BstMWI GCNNNNNNNGC 4 cut(s) 955, 964, 973, 1331
BstNI CCWGG 1 cut(s) 1402
BstPAI GACNNNNGTC 1 cut(s) 863
BstPI GGTNACC 2 cut(s) 641, 660
BstSCI CCNGG 2 cut(s) 645, 1400
BstSLI GKGCMC 1 cut(s) 112
BstUI CGCG 1 cut(s) 1154
BstV1I GCAGC 3 cut(s) 958, 961, 1243
BstV2I GAAGAC 1 cut(s) 1284
BstXI CCANNNNNNTGG 1 cut(s) 1304
BsuRI GGCC 2 cut(s) 250, 958
BtgI CCRYGG 2 cut(s) 245, 834
BtrI CACGTC 1 cut(s) 1411
BtsCI GGATG 3 cut(s) 481, 596, 1042
BtsIMutI CAGTG 2 cut(s) 32, 1270
Cac8I GCNNGC 1 cut(s) 1421
CfoI GCGC 1 cut(s) 1055
Cfr10I RCCGGY 1 cut(s) 664
Cfr13I GGNCC 2 cut(s) 422, 956
Csp6I GTAC 3 cut(s) 137, 622, 909
CspAI ACCGGT 1 cut(s) 664
CviAII CATG 4 cut(s) 246, 835, 941, 1250
CviQI GTAC 3 cut(s) 137, 622, 909
DdeI CTNAG 4 cut(s) 172, 225, 498, 1036
DpnI GATC 6 cut(s) 301, 1017, 1223, 1269, 1310, 1354
DpnII GATC 6 cut(s) 299, 1015, 1221, 1267, 1308, 1352
DriI GACNNNNNGTC 1 cut(s) 420
EaeI YGGCCR 1 cut(s) 248
Eam1104I CTCTTC 3 cut(s) 204, 1292, 1324
Eam1105I GACNNNNNGTC 1 cut(s) 420
EarI CTCTTC 3 cut(s) 204, 1292, 1324
Ecl136II GAGCTC 1 cut(s) 1334
Eco130I CCWWGG 3 cut(s) 245, 677, 834
Eco24I GRGCYC 1 cut(s) 1336
Eco31I GGTCTC 1 cut(s) 1386
Eco47I GGWCC 1 cut(s) 422
Eco53kI GAGCTC 1 cut(s) 1334
Eco57I CTGAAG 2 cut(s) 606, 1202
Eco88I CYCGRG 1 cut(s) 1188
Eco91I GGTNACC 2 cut(s) 641, 660
EcoICRI GAGCTC 1 cut(s) 1334
EcoO65I GGTNACC 2 cut(s) 641, 660
EcoRII CCWGG 1 cut(s) 1400
EcoT14I CCWWGG 3 cut(s) 245, 677, 834
EcoT38I GRGCYC 1 cut(s) 1336
ErhI CCWWGG 3 cut(s) 245, 677, 834
FaeI CATG 4 cut(s) 249, 838, 944, 1253
FalI AAGNNNNNCTT 2 cut(s) 70, 102
FaqI GGGAC 1 cut(s) 1170
FatI CATG 4 cut(s) 245, 834, 940, 1249
FauI CCCGC 1 cut(s) 1147
FauNDI CATATG 1 cut(s) 990
Fnu4HI GCNGC 5 cut(s) 6, 9, 947, 950, 1257
FokI GGATG 3 cut(s) 488, 603, 1029
FriOI GRGCYC 1 cut(s) 1336
Fsp4HI GCNGC 5 cut(s) 6, 9, 947, 950, 1257
FspBI CTAG 1 cut(s) 678
GlaI GCGC 1 cut(s) 1054
GluI GCNGC 5 cut(s) 6, 9, 947, 950, 1257
GsaI CCCAGC 1 cut(s) 331
HaeII RGCGCY 1 cut(s) 1056
HaeIII GGCC 2 cut(s) 250, 958
HapII CCGG 5 cut(s) 473, 490, 560, 646, 665
HhaI GCGC 1 cut(s) 1055
Hin1II CATG 4 cut(s) 249, 838, 944, 1253
Hin6I GCGC 1 cut(s) 1053
HinP1I GCGC 1 cut(s) 1053
HincII GTYRAC 3 cut(s) 483, 1000, 1129
HindII GTYRAC 3 cut(s) 483, 1000, 1129
HindIII AAGCTT 1 cut(s) 114
HpaI GTTAAC 2 cut(s) 483, 1129
HpaII CCGG 5 cut(s) 473, 490, 560, 646, 665
HphI GGTGA 5 cut(s) 271, 536, 583, 644, 653
Hpy166II GTNNAC 9 cut(s) 110, 375, 448, 470, 483, 858, 1000, 1129, 1201
Hpy8I GTNNAC 9 cut(s) 110, 375, 448, 470, 483, 858, 1000, 1129, 1201
HpyAV CCTTC 5 cut(s) 192, 581, 695, 743, 1187
HpyCH4III ACNGT 3 cut(s) 16, 660, 1198
HpyCH4IV ACGT 2 cut(s) 983, 1410
HpyCH4V TGCA 5 cut(s) 110, 823, 946, 1229, 1325
HpyF10VI GCNNNNNNNGC 4 cut(s) 955, 964, 973, 1331
HpyF3I CTNAG 4 cut(s) 172, 225, 498, 1036
HpySE526I ACGT 2 cut(s) 983, 1410
Hsp92II CATG 4 cut(s) 249, 838, 944, 1253
HspAI GCGC 1 cut(s) 1053
KspAI GTTAAC 2 cut(s) 483, 1129
Kzo9I GATC 6 cut(s) 299, 1015, 1221, 1267, 1308, 1352
LguI GCTCTTC 2 cut(s) 1292, 1324
LmnI GCTCC 3 cut(s) 554, 1170, 1253
Lsp1109I GCAGC 3 cut(s) 958, 961, 1243
MaeI CTAG 1 cut(s) 678
MaeII ACGT 2 cut(s) 983, 1410
MaeIII GTNAC 3 cut(s) 252, 641, 660
MalI GATC 6 cut(s) 301, 1017, 1223, 1269, 1310, 1354
MboI GATC 6 cut(s) 299, 1015, 1221, 1267, 1308, 1352
MhlI GDGCHC 3 cut(s) 112, 559, 1336
MlyI GAGTC 2 cut(s) 223, 1003
MmeI TCCRAC 1 cut(s) 892
MroXI GAANNNNTTC 1 cut(s) 85
MseI TTAA 4 cut(s) 293, 482, 543, 1128
MslI CAYNNNNRTG 1 cut(s) 993
MspA1I CMGCKG 1 cut(s) 224
MspI CCGG 5 cut(s) 473, 490, 560, 646, 665
MspR9I CCNGG 2 cut(s) 647, 1402
Mva1269I GAATGC 2 cut(s) 802, 811
MvaI CCWGG 1 cut(s) 1402
MvnI CGCG 1 cut(s) 1154
MwoI GCNNNNNNNGC 4 cut(s) 955, 964, 973, 1331
NciI CCSGG 1 cut(s) 647
NcoI CCATGG 2 cut(s) 245, 834
NdeI CATATG 1 cut(s) 990
NdeII GATC 6 cut(s) 299, 1015, 1221, 1267, 1308, 1352
NlaIII CATG 4 cut(s) 249, 838, 944, 1253
NlaIV GGNNCC 1 cut(s) 1172
NmuCI GTSAC 2 cut(s) 252, 641
PciSI GCTCTTC 2 cut(s) 1292, 1324
PcsI WCGNNNNNNNCGW 2 cut(s) 248, 413
PctI GAATGC 2 cut(s) 802, 811
PdmI GAANNNNTTC 1 cut(s) 85
PinAI ACCGGT 1 cut(s) 664
PkrI GCNGC 5 cut(s) 7, 10, 948, 951, 1258
PleI GAGTC 2 cut(s) 223, 1003
PpsI GAGTC 2 cut(s) 223, 1003
PshAI GACNNNNGTC 1 cut(s) 863
PshBI ATTAAT 1 cut(s) 543
Psp124BI GAGCTC 1 cut(s) 1336
Psp6I CCWGG 1 cut(s) 1400
PspEI GGTNACC 2 cut(s) 641, 660
PspFI CCCAGC 1 cut(s) 327
PspGI CCWGG 1 cut(s) 1400
PspN4I GGNNCC 1 cut(s) 1172
PspPI GGNCC 2 cut(s) 422, 956
RsaI GTAC 3 cut(s) 138, 623, 910
RsaNI GTAC 3 cut(s) 137, 622, 909
RseI CAYNNNNRTG 1 cut(s) 993
SacI GAGCTC 1 cut(s) 1336
SapI GCTCTTC 2 cut(s) 1292, 1324
SaqAI TTAA 4 cut(s) 293, 482, 543, 1128
SatI GCNGC 5 cut(s) 6, 9, 947, 950, 1257
Sau3AI GATC 6 cut(s) 299, 1015, 1221, 1267, 1308, 1352
Sau96I GGNCC 2 cut(s) 422, 956
ScaI AGTACT 1 cut(s) 910
SchI GAGTC 2 cut(s) 223, 1003
ScrFI CCNGG 2 cut(s) 647, 1402
SduI GDGCHC 3 cut(s) 112, 559, 1336
SinI GGWCC 1 cut(s) 422
SmiMI CAYNNNNRTG 1 cut(s) 993
SsiI CCGC 3 cut(s) 5, 222, 1154
SspI AATATT 1 cut(s) 461
SspMI CTAG 1 cut(s) 678
SstI GAGCTC 1 cut(s) 1336
StyD4I CCNGG 2 cut(s) 645, 1400
StyI CCWWGG 3 cut(s) 245, 677, 834
TaaI ACNGT 3 cut(s) 16, 660, 1198
TaiI ACGT 2 cut(s) 986, 1413
TaqII GACCGA 1 cut(s) 11
TatI WGTACW 2 cut(s) 136, 908
TauI GCSGC 1 cut(s) 8
Tru1I TTAA 4 cut(s) 293, 482, 543, 1128
Tru9I TTAA 4 cut(s) 293, 482, 543, 1128
TscAI CASTG 2 cut(s) 39, 1270
TseFI GTSAC 2 cut(s) 252, 641
TseI GCWGC 4 cut(s) 8, 946, 949, 1256
Tsp45I GTSAC 2 cut(s) 252, 641
TspDTI ATGAA 3 cut(s) 759, 929, 977
TspGWI ACGGA 3 cut(s) 200, 377, 1183
TspRI CASTG 2 cut(s) 39, 1270
VneI GTGCAC 1 cut(s) 108
VpaK11BI GGWCC 1 cut(s) 422
VspI ATTAAT 1 cut(s) 543
XapI RAATTY 5 cut(s) 337, 345, 409, 511, 728
XmaJI CCTAGG 1 cut(s) 677
XmnI GAANNNNTTC 1 cut(s) 85
XspI CTAG 1 cut(s) 678
ZrmI AGTACT 1 cut(s) 910
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.