RLG00000021344

Protein ABCI7, chloroplastic-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
74310707 .. 74311168
462 bp
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UTR
Exon/CDS
Intron
RLM00000021344

Sequence Viewer

Length: 381 bp
ATGGCTGCCATAACATTTACACCCCAGCTCACCTACGACCCCTTCATTCACCAACTCGCCGTGTCCCTCGACGACTCACTCCCCTCCTCCTCCTCTTCTTCATCTTTATCTCTCCAAAACCTCAGAGACTCTTCCGTTCAAACCGCCCTCTTAACCCCATGGCCTACTCGCAAGGACGAGCTCTTTCGATTCACCGACACCTCCTTCATCAAGAATTCTCAAATCACGCCAATCTCTCACCCACCAAGCTTTCCGACCACGCCGGAAGATACCCAATCCCCCAATTTGGATATTGTTGATGGTTTCCTTGTGAATTTGTCGAATTTGGGTGAATTGCCCAATGAGGTTTATGTGGGTTGCTTGCTGGAGCTTTCAGACTAG

Protein Analysis

127

Amino Acids

13.84

Weight (kDa)

4.2

Isoelectric Point (pI)

49.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 144
AcsI RAATTY 3 cut(s) 214, 313, 322
AfiI CCNNNNNNNGG 1 cut(s) 286
AgsI TTSAA 1 cut(s) 140
AluBI AGCT 4 cut(s) 28, 181, 249, 370
AluI AGCT 4 cut(s) 28, 181, 249, 370
Alw21I GWGCWC 1 cut(s) 183
Alw26I GTCTC 1 cut(s) 120
AoxI GGCC 1 cut(s) 161
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 3 cut(s) 214, 313, 322
AsuHPI GGTGA 5 cut(s) 22, 41, 184, 230, 341
BanII GRGCYC 1 cut(s) 183
Bbv12I GWGCWC 1 cut(s) 183
BccI CCATC 1 cut(s) 293
BceAI ACGGC 1 cut(s) 44
BcoDI GTCTC 1 cut(s) 120
BfaI CTAG 1 cut(s) 379
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
BsaJI CCNNGG 1 cut(s) 158
Bsc4I CCNNNNNNNGG 1 cut(s) 286
BseDI CCNNGG 1 cut(s) 158
BseLI CCNNNNNNNGG 1 cut(s) 286
BseMII CTCAG 1 cut(s) 136
BseRI GAGGAG 3 cut(s) 76, 79, 82
BseYI CCCAGC 1 cut(s) 24
BshFI GGCC 1 cut(s) 163
BsiHKAI GWGCWC 1 cut(s) 183
BsiSI CCGG 1 cut(s) 263
BslFI GGGAC 1 cut(s) 49
BslI CCNNNNNNNGG 1 cut(s) 286
BsmAI GTCTC 1 cut(s) 120
BsmFI GGGAC 1 cut(s) 49
BsnI GGCC 1 cut(s) 163
Bsp1286I GDGCHC 1 cut(s) 183
Bsp19I CCATGG 1 cut(s) 158
BspACI CCGC 1 cut(s) 144
BspANI GGCC 1 cut(s) 163
BspCNI CTCAG 1 cut(s) 135
BssECI CCNNGG 1 cut(s) 158
BssT1I CCWWGG 1 cut(s) 158
Bst6I CTCTTC 2 cut(s) 100, 136
BstC8I GCNNGC 1 cut(s) 362
BstDEI CTNAG 1 cut(s) 122
BstDSI CCRYGG 1 cut(s) 158
BstMAI GTCTC 1 cut(s) 120
BsuRI GGCC 1 cut(s) 163
BtgI CCRYGG 1 cut(s) 158
Cac8I GCNNGC 1 cut(s) 362
CviAII CATG 1 cut(s) 159
CviJI RGCY 6 cut(s) 5, 28, 163, 181, 249, 370
CviKI_1 RGCY 6 cut(s) 5, 28, 163, 181, 249, 370
DdeI CTNAG 1 cut(s) 122
Eam1104I CTCTTC 2 cut(s) 100, 136
EarI CTCTTC 2 cut(s) 100, 136
Ecl136II GAGCTC 1 cut(s) 181
Eco130I CCWWGG 1 cut(s) 158
Eco24I GRGCYC 1 cut(s) 183
Eco53kI GAGCTC 1 cut(s) 181
EcoICRI GAGCTC 1 cut(s) 181
EcoRI GAATTC 1 cut(s) 214
EcoT14I CCWWGG 1 cut(s) 158
EcoT38I GRGCYC 1 cut(s) 183
ErhI CCWWGG 1 cut(s) 158
FaeI CATG 1 cut(s) 162
FaiI YATR 3 cut(s) 11, 160, 351
FaqI GGGAC 1 cut(s) 49
FatI CATG 1 cut(s) 158
Fnu4HI GCNGC 1 cut(s) 6
FriOI GRGCYC 1 cut(s) 183
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 1 cut(s) 379
GluI GCNGC 1 cut(s) 6
GsaI CCCAGC 1 cut(s) 28
HaeIII GGCC 1 cut(s) 163
HapII CCGG 1 cut(s) 263
Hin1II CATG 1 cut(s) 162
HindIII AAGCTT 1 cut(s) 247
HinfI GANTC 3 cut(s) 74, 128, 189
HpaII CCGG 1 cut(s) 263
HphI GGTGA 5 cut(s) 22, 41, 184, 230, 341
Hpy188I TCNGA 3 cut(s) 125, 255, 376
Hpy188III TCNNGA 1 cut(s) 211
Hpy99I CGWCG 1 cut(s) 74
HpyAV CCTTC 2 cut(s) 52, 214
HpyF3I CTNAG 1 cut(s) 122
Hsp92II CATG 1 cut(s) 162
LmnI GCTCC 1 cut(s) 367
LpnPI CCDG 3 cut(s) 38, 276, 350
MaeI CTAG 1 cut(s) 379
MboII GAAGA 4 cut(s) 87, 90, 123, 278
MhlI GDGCHC 1 cut(s) 183
MluCI AATT 5 cut(s) 214, 283, 313, 322, 332
MlyI GAGTC 2 cut(s) 68, 122
MmeI TCCRAC 1 cut(s) 278
MnlI CCTC 9 cut(s) 77, 94, 97, 100, 103, 131, 158, 211, 337
MseI TTAA 1 cut(s) 152
MspI CCGG 1 cut(s) 263
NcoI CCATGG 1 cut(s) 158
NlaIII CATG 1 cut(s) 162
PfeI GAWTC 1 cut(s) 189
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 2 cut(s) 68, 122
PpsI GAGTC 2 cut(s) 68, 122
Psp124BI GAGCTC 1 cut(s) 183
PspFI CCCAGC 1 cut(s) 24
SacI GAGCTC 1 cut(s) 183
SaqAI TTAA 1 cut(s) 152
SatI GCNGC 1 cut(s) 6
SchI GAGTC 2 cut(s) 68, 122
SduI GDGCHC 1 cut(s) 183
SetI ASST 8 cut(s) 30, 35, 123, 183, 203, 251, 348, 372
Sse9I AATT 5 cut(s) 214, 283, 313, 322, 332
SsiI CCGC 1 cut(s) 144
SspMI CTAG 1 cut(s) 379
SstI GAGCTC 1 cut(s) 183
StyI CCWWGG 1 cut(s) 158
TaqI TCGA 3 cut(s) 69, 187, 320
TasI AATT 5 cut(s) 214, 283, 313, 322, 332
TfiI GAWTC 1 cut(s) 189
Tru1I TTAA 1 cut(s) 152
Tru9I TTAA 1 cut(s) 152
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 3 cut(s) 34, 90, 196
TspGWI ACGGA 1 cut(s) 124
XapI RAATTY 3 cut(s) 214, 313, 322
XspI CTAG 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.