Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0007905

Physical Location & Seq

Genomic Coordinates Forward (+)

48086229 .. 48086996

Gene Structure 768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1388500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 153 bp

ATGGAGACTCTCAGATTTTATGTTTATGTAGTTCTAGACCAAGCACGTGACATCAACGTAGAGGCAGCAAGGAAGGCTCTCCTATTTACCTTTGGTGCAAAGGGGATTGAAATTATCTACTTGGATGAAGAACAACGTGAAAAGTCAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006790 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009668 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010027 GO:0010154 GO:0016043 GO:0016226 GO:0022414 GO:0022607 GO:0031163 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051186 GO:0061024 GO:0061458 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UPF0051

Protein Analysis

51

Amino Acids

5.87

Weight (kDa)

4.89

Isoelectric Point (pI)

39.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32500
fragaria_vesca	FvH4_6g31710 FvH4_6g31710 FvH4_6g31710 FvH4_6g31710 FvH4_6g31710 FvH4_6g31710
malus_domestica	MD09G1232600.v1.1 MD15G1388500.v1.1
prunus_persica	Prupe.1G552500_v2.0.a1
pyrus_communis	pycom09g14240
rosa_chinensis	RchiOBHm_Chr6g0269051
rosa_laevigata	RLG00000013887 RLG00000021344
rosa_multiflora	Rmu_sc0004350.1_g000003 Rmu_sc0032469.1_g000008
rosa_roxburghii	Rroxscaffold_7G00199060
rosa_rugosa	Rorug06G0044700
rosa_samantha	Rh6AG165200 Rh6BG170600 Rh6CG164100 Rh6DG155700
rosa_wichuraiana	Rw6G014210 Rw6G014270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcvI	CACGTG	1 cut(s)	47
AgsI	TTSAA	1 cut(s)	110
ApeKI	GCWGC	1 cut(s)	65
BbrPI	CACGTG	1 cut(s)	47
BbvI	GCAGC	1 cut(s)	77
BfaI	CTAG	1 cut(s)	35
BisI	GCNGC	1 cut(s)	66
BlsI	GCNGC	1 cut(s)	67
BsaAI	YACGTR	1 cut(s)	47
BseGI	GGATG	1 cut(s)	130
BseMII	CTCAG	1 cut(s)	25
BseXI	GCAGC	1 cut(s)	77
BspCNI	CTCAG	1 cut(s)	24
BstBAI	YACGTR	1 cut(s)	47
BstDEI	CTNAG	1 cut(s)	11
BstF5I	GGATG	1 cut(s)	130
BstMWI	GCNNNNNNNGC	1 cut(s)	74
BstV1I	GCAGC	1 cut(s)	77
BtsCI	GGATG	1 cut(s)	130
CviJI	RGCY	1 cut(s)	77
CviKI_1	RGCY	1 cut(s)	77
DdeI	CTNAG	1 cut(s)	11
Eco72I	CACGTG	1 cut(s)	47
FaiI	YATR	2 cut(s)	21, 27
Fnu4HI	GCNGC	1 cut(s)	66
FokI	GGATG	1 cut(s)	137
Fsp4HI	GCNGC	1 cut(s)	66
FspBI	CTAG	1 cut(s)	35
GluI	GCNGC	1 cut(s)	66
HinfI	GANTC	1 cut(s)	7
Hpy188I	TCNGA	1 cut(s)	14
Hpy188III	TCNNGA	1 cut(s)	35
HpyAV	CCTTC	1 cut(s)	67
HpyCH4IV	ACGT	3 cut(s)	46, 57, 136
HpyCH4V	TGCA	1 cut(s)	98
HpyF10VI	GCNNNNNNNGC	1 cut(s)	74
HpyF3I	CTNAG	1 cut(s)	11
HpySE526I	ACGT	3 cut(s)	46, 57, 136
Lsp1109I	GCAGC	1 cut(s)	77
MaeI	CTAG	1 cut(s)	35
MaeII	ACGT	3 cut(s)	46, 57, 136
MaeIII	GTNAC	1 cut(s)	47
MboII	GAAGA	1 cut(s)	140
MluCI	AATT	2 cut(s)	111, 148
MnlI	CCTC	1 cut(s)	55
MseI	TTAA	1 cut(s)	151
MwoI	GCNNNNNNNGC	1 cut(s)	74
NmuCI	GTSAC	1 cut(s)	47
PkrI	GCNGC	1 cut(s)	67
PmaCI	CACGTG	1 cut(s)	47
PmlI	CACGTG	1 cut(s)	47
Ppu21I	YACGTR	1 cut(s)	47
PspCI	CACGTG	1 cut(s)	47
SaqAI	TTAA	1 cut(s)	151
SatI	GCNGC	1 cut(s)	66
SetI	ASST	4 cut(s)	49, 60, 92, 139
SgeI	CNNG	7 cut(s)	47, 53, 57, 59, 81, 133, 149
Sse9I	AATT	2 cut(s)	111, 148
SspMI	CTAG	1 cut(s)	35
TaiI	ACGT	3 cut(s)	49, 60, 139
TasI	AATT	2 cut(s)	111, 148
Tru1I	TTAA	1 cut(s)	151
Tru9I	TTAA	1 cut(s)	151
TseFI	GTSAC	1 cut(s)	47
TseI	GCWGC	1 cut(s)	65
Tsp45I	GTSAC	1 cut(s)	47
TspDTI	ATGAA	1 cut(s)	141
XbaI	TCTAGA	1 cut(s)	34
XspI	CTAG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.