MD09G1232600.v1.1

Protein ABCI7, chloroplastic-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Forward (+)
29016217 .. 29024250
8034 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1232600.v1.1.491

Sequence Viewer

Length: 1452 bp
ATGGCGGCCATATCATTCACAACCCACATTCAAAGACCTCCGGTACCTTTATTTTCTACACCCAAAATCCCTAAAACAAAACTCAGAGTCTCAACTCAAGCTTCTCCAACTTCACAAGTCGCCTTATCAGACCCCTTTGTTCTACAACTAGCTGAAGCTCTTGAAGATTCACTACCTTCTTCTTATGCTTCATCTCCTTTACCTTTACAAAATCTCAGAGACTCTTCCTCTGAGGCCCTCCTCTCAACCCCATGGCCGTCTCGCAAAGATGAGCCCTTTCGCTTCACTGACACCTCCTTCATCAAGAACTCCCAAATCCAACCAATCTCTCACCCTCCGACCTTTTCAAGCATTTTGGAAGATACACAAATTCCAAATCTGGTTATAGTTGATGGGTTTGTCGTAAGTTTCTCAAATTTGAGCGAATTGCCGGATGGGGTTTATGTGGGTAGCTTTCAGCAGCTGTCAGAACAGACCGTTATGGAAAGGGTGTCTGAGTTTGTGTCTAGTAGTTGTCGGGGTGACTTATTTTGGTCTATTAATGGAATCGGGGCTCCAGATGTAACTGTGATTTATGTACCTTCTGGATGCCGTGTAGAGACTCCAGTTTATCTGCGGTACTTTGCAAACGAGGGCAGTGATGAGGGGTCAAATAAACTGCCGTTAGCGAATCCAAGGGTGCTTGTGTTGGTGGAGAAGGGAGGGGAGATTGGTATAATTGAGGAGTTCTTGGGTGGGGATGGCGACAAGTGTTATTGGACAAATTCTGTTTTTGAGGTAGTGGTTGGAGAAGGAGGAAAAGTTACGCATTCCTATGTTCAGAATCAATCTCTGAATGCTGCCCATATAAAGTGGACTTGGGTCCATCAGGAATCAGCTAGTACATACGAGCTTGTGGAGGTTAGTACTGGTGGAAAATTGAGCAGGCATAATCTCCATGTTCAACAACTGGGACCAGACACAGTCACCGAGTTATCAACACTGCAATTGTCTGTCGGTGATCAAACACATGATCTGCATAGTAGTGTAGTCCTGGACCATCCACGGGGTTATTCCAGACAACTTCACAAATGCATCGTGTCTCATTCTCTAGGCCAAGCTGTATTTGATGGGAACATAAGGGTTAACAGATATGCTCAGCAAACAGACGGTGGGCAGCTGACAAGAAGTCTTCTTCTTGCACCTCGTGCAACTGTAAATGTCAAACCGAATCTTCAAATTATTGCTGATGATGTCAAGTGTTCCCATGGATGTGCAATCAGCGATCTAGAAGAAAGCCAGCTCTTCTATTTCCAGGCACGTGGCATTGATGTAGAGGCAGCGAGAAAGGCTCTCCTCTTTTCCTTTGGTGCAGAGGTGATTGAAAGATTACCTTATAATTGGATGAAAAAGAACGTGGAAAATCAAATTAGAGAATTGTTGGATCCTACTACTAATACAGGATCCGCATAA

Protein Analysis

484

Amino Acids

53.12

Weight (kDa)

5.34

Isoelectric Point (pI)

38.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SufBD_N PF19295 65 - 203 4.4e-08 SufBD protein N-terminal region
SUFBD_core PF01458 221 - 449 8.5e-66 SUF system FeS cluster assembly, SufBD core domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1377
Acc65I GGTACC 1 cut(s) 43
AccB1I GGYRCC 1 cut(s) 43
AciI CCGC 3 cut(s) 5, 616, 1446
AclWI GGATC 4 cut(s) 1418, 1431, 1437, 1450
AcoI YGGCCR 2 cut(s) 6, 254
AcsI RAATTY 3 cut(s) 369, 415, 763
AcuI CTGAAG 1 cut(s) 174
AcvI CACGTG 1 cut(s) 1301
AdeI CACNNNGTG 1 cut(s) 1187
AfaI GTAC 5 cut(s) 45, 579, 620, 883, 907
AfiI CCNNNNNNNGG 1 cut(s) 1045
AgsI TTSAA 6 cut(s) 32, 164, 348, 944, 1217, 1364
AhdI GACNNNNNGTC 1 cut(s) 1167
AjnI CCWGG 2 cut(s) 1032, 1293
Alw26I GTCTC 5 cut(s) 94, 213, 264, 593, 1086
AlwI GGATC 4 cut(s) 1418, 1431, 1437, 1450
AlwNI CAGNNNCTG 1 cut(s) 463
AoxI GGCC 4 cut(s) 6, 234, 254, 1093
ApeKI GCWGC 4 cut(s) 460, 839, 1156, 1319
ApoI RAATTY 3 cut(s) 369, 415, 763
AseI ATTAAT 1 cut(s) 540
Asp718I GGTACC 1 cut(s) 43
AspS9I GGNCC 4 cut(s) 235, 862, 953, 1036
AsuHPI GGTGA 5 cut(s) 323, 533, 958, 1010, 1369
AvaII GGWCC 3 cut(s) 862, 953, 1036
BamHI GGATCC 2 cut(s) 1423, 1442
BanI GGYRCC 1 cut(s) 43
BanII GRGCYC 2 cut(s) 276, 556
BarI GAAGNNNNNNTAC 2 cut(s) 156, 188
BauI CACGAG 1 cut(s) 1185
BbrPI CACGTG 1 cut(s) 1301
BbsI GAAGAC 1 cut(s) 1163
BbvI GCAGC 4 cut(s) 472, 826, 1168, 1331
BccI CCATC 6 cut(s) 386, 428, 734, 873, 1047, 1103
BceAI ACGGC 3 cut(s) 241, 576, 646
BciT130I CCWGG 2 cut(s) 1034, 1295
BclI TGATCA 1 cut(s) 1000
BcoDI GTCTC 5 cut(s) 94, 213, 264, 593, 1086
BfaI CTAG 5 cut(s) 149, 507, 879, 1091, 1268
BisI GCNGC 5 cut(s) 6, 461, 840, 1157, 1320
BlpI GCTNAGC 1 cut(s) 1137
BlsI GCNGC 5 cut(s) 7, 462, 841, 1158, 1321
BmcAI AGTACT 1 cut(s) 907
Bme1390I CCNGG 2 cut(s) 1034, 1295
Bme18I GGWCC 3 cut(s) 862, 953, 1036
BmeRI GACNNNNNGTC 1 cut(s) 1167
BmgT120I GGNCC 4 cut(s) 235, 862, 953, 1036
BmiI GGNNCC 6 cut(s) 45, 555, 863, 954, 1425, 1444
BmrFI CCNGG 2 cut(s) 1034, 1295
BmrI ACTGGG 1 cut(s) 959
BmsI GCATC 2 cut(s) 578, 1083
BmuI ACTGGG 1 cut(s) 959
BoxI GACNNNNGTC 1 cut(s) 860
BpiI GAAGAC 1 cut(s) 1163
BplI GAGNNNNNCTC 2 cut(s) 1315, 1347
BpmI CTGGAG 2 cut(s) 540, 588
Bpu1102I GCTNAGC 1 cut(s) 1137
BpuEI CTTGAG 1 cut(s) 81
BsaAI YACGTR 1 cut(s) 1301
BsaJI CCNNGG 4 cut(s) 251, 674, 1043, 1246
BsaWI WCCGGW 1 cut(s) 40
BsaXI ACNNNNNCTCC 2 cut(s) 786, 816
Bsc4I CCNNNNNNNGG 1 cut(s) 1045
Bse1I ACTGG 3 cut(s) 605, 913, 954
BseBI CCWGG 2 cut(s) 1034, 1295
BseDI CCNNGG 4 cut(s) 251, 674, 1043, 1246
BseGI GGATG 6 cut(s) 439, 593, 745, 1039, 1256, 1389
BseLI CCNNNNNNNGG 1 cut(s) 1045
BseMII CTCAG 5 cut(s) 97, 222, 229, 486, 1151
BseNI ACTGG 3 cut(s) 605, 913, 954
BseRI GAGGAG 3 cut(s) 230, 737, 1325
BseXI GCAGC 4 cut(s) 472, 826, 1168, 1331
BsgI GTGCAG 1 cut(s) 1371
BshFI GGCC 4 cut(s) 8, 236, 256, 1095
BshNI GGYRCC 1 cut(s) 43
BsiSI CCGG 2 cut(s) 41, 431
BslFI GGGAC 1 cut(s) 966
BslI CCNNNNNNNGG 1 cut(s) 1045
BsmAI GTCTC 5 cut(s) 94, 213, 264, 593, 1086
BsmBI CGTCTC 1 cut(s) 264
BsmFI GGGAC 1 cut(s) 966
BsmI GAATGC 2 cut(s) 808, 841
BsnI GGCC 4 cut(s) 8, 236, 256, 1095
Bsp1286I GDGCHC 2 cut(s) 276, 556
Bsp143I GATC 5 cut(s) 1000, 1012, 1264, 1423, 1442
Bsp1720I GCTNAGC 1 cut(s) 1137
Bsp19I CCATGG 2 cut(s) 251, 1246
BspACI CCGC 3 cut(s) 5, 616, 1446
BspANI GGCC 4 cut(s) 8, 236, 256, 1095
BspCNI CTCAG 5 cut(s) 96, 223, 228, 487, 1150
BspLI GGNNCC 6 cut(s) 45, 555, 863, 954, 1425, 1444
BspPI GGATC 4 cut(s) 1418, 1431, 1437, 1450
BspQI GCTCTTC 1 cut(s) 1289
BspT107I GGYRCC 1 cut(s) 43
BsrI ACTGG 3 cut(s) 605, 913, 954
BssECI CCNNGG 4 cut(s) 251, 674, 1043, 1246
BssMI GATC 5 cut(s) 1000, 1012, 1264, 1423, 1442
BssSI CACGAG 1 cut(s) 1185
BssT1I CCWWGG 3 cut(s) 251, 674, 1246
Bst2BI CACGAG 1 cut(s) 1185
Bst2UI CCWGG 2 cut(s) 1034, 1295
Bst4CI ACNGT 5 cut(s) 478, 568, 964, 1151, 1195
Bst6I CTCTTC 2 cut(s) 229, 1289
BstAPI GCANNNNNTGC 1 cut(s) 1187
BstBAI YACGTR 1 cut(s) 1301
BstC8I GCNNGC 2 cut(s) 926, 1280
BstDEI CTNAG 5 cut(s) 83, 215, 231, 495, 1137
BstDSI CCRYGG 3 cut(s) 251, 1043, 1246
BstF5I GGATG 6 cut(s) 439, 593, 745, 1039, 1256, 1389
BstKTI GATC 5 cut(s) 1003, 1015, 1267, 1426, 1445
BstMAI GTCTC 5 cut(s) 94, 213, 264, 593, 1086
BstMBI GATC 5 cut(s) 1000, 1012, 1264, 1423, 1442
BstMWI GCNNNNNNNGC 2 cut(s) 1187, 1328
BstNI CCWGG 2 cut(s) 1034, 1295
BstPAI GACNNNNGTC 1 cut(s) 860
BstSCI CCNGG 2 cut(s) 1032, 1293
BstV1I GCAGC 4 cut(s) 472, 826, 1168, 1331
BstV2I GAAGAC 1 cut(s) 1163
BstX2I RGATCY 2 cut(s) 1423, 1442
BstXI CCANNNNNNTGG 1 cut(s) 1301
BstYI RGATCY 2 cut(s) 1423, 1442
BsuRI GGCC 4 cut(s) 8, 236, 256, 1095
BtgI CCRYGG 3 cut(s) 251, 1043, 1246
BtsCI GGATG 6 cut(s) 439, 593, 745, 1039, 1256, 1389
BtsI GCAGTG 2 cut(s) 643, 980
BtsIMutI CAGTG 3 cut(s) 285, 643, 980
Cac8I GCNNGC 2 cut(s) 926, 1280
CaiI CAGNNNCTG 1 cut(s) 463
Cfr13I GGNCC 4 cut(s) 235, 862, 953, 1036
Csp6I GTAC 5 cut(s) 44, 578, 619, 882, 906
CviAII CATG 4 cut(s) 252, 938, 1010, 1247
CviQI GTAC 5 cut(s) 44, 578, 619, 882, 906
DdeI CTNAG 5 cut(s) 83, 215, 231, 495, 1137
DpnI GATC 5 cut(s) 1002, 1014, 1266, 1425, 1444
DpnII GATC 5 cut(s) 1000, 1012, 1264, 1423, 1442
DraIII CACNNNGTG 1 cut(s) 1187
DriI GACNNNNNGTC 1 cut(s) 1167
EaeI YGGCCR 2 cut(s) 6, 254
Eam1104I CTCTTC 2 cut(s) 229, 1289
Eam1105I GACNNNNNGTC 1 cut(s) 1167
EarI CTCTTC 2 cut(s) 229, 1289
Eco130I CCWWGG 3 cut(s) 251, 674, 1246
Eco24I GRGCYC 2 cut(s) 276, 556
Eco47I GGWCC 3 cut(s) 862, 953, 1036
Eco57I CTGAAG 1 cut(s) 174
Eco72I CACGTG 1 cut(s) 1301
EcoO109I RGGNCCY 1 cut(s) 235
EcoRII CCWGG 2 cut(s) 1032, 1293
EcoT14I CCWWGG 3 cut(s) 251, 674, 1246
EcoT22I ATGCAT 1 cut(s) 1076
EcoT38I GRGCYC 2 cut(s) 276, 556
ErhI CCWWGG 3 cut(s) 251, 674, 1246
Esp3I CGTCTC 1 cut(s) 264
FaeI CATG 4 cut(s) 255, 941, 1013, 1250
FalI AAGNNNNNCTT 2 cut(s) 1357, 1389
FaqI GGGAC 1 cut(s) 966
FatI CATG 4 cut(s) 251, 937, 1009, 1246
FbaI TGATCA 1 cut(s) 1000
Fnu4HI GCNGC 5 cut(s) 6, 461, 840, 1157, 1320
FokI GGATG 6 cut(s) 446, 600, 752, 1026, 1263, 1396
FriOI GRGCYC 2 cut(s) 276, 556
Fsp4HI GCNGC 5 cut(s) 6, 461, 840, 1157, 1320
FspBI CTAG 5 cut(s) 149, 507, 879, 1091, 1268
GluI GCNGC 5 cut(s) 6, 461, 840, 1157, 1320
GsuI CTGGAG 2 cut(s) 540, 588
HaeIII GGCC 4 cut(s) 8, 236, 256, 1095
HapII CCGG 2 cut(s) 41, 431
Hin1II CATG 4 cut(s) 255, 941, 1013, 1250
HincII GTYRAC 1 cut(s) 1126
HindII GTYRAC 1 cut(s) 1126
HindIII AAGCTT 1 cut(s) 99
HinfI GANTC 9 cut(s) 87, 167, 221, 546, 601, 670, 823, 872, 1210
HpaI GTTAAC 1 cut(s) 1126
HpaII CCGG 2 cut(s) 41, 431
HphI GGTGA 5 cut(s) 323, 533, 958, 1010, 1369
Hpy166II GTNNAC 2 cut(s) 855, 1126
Hpy188I TCNGA 9 cut(s) 86, 130, 218, 232, 339, 469, 496, 822, 834
Hpy188III TCNNGA 7 cut(s) 161, 304, 557, 585, 869, 1056, 1268
Hpy8I GTNNAC 2 cut(s) 855, 1126
HpyAV CCTTC 5 cut(s) 186, 307, 591, 691, 785
HpyCH4III ACNGT 5 cut(s) 478, 568, 964, 1151, 1195
HpyCH4IV ACGT 2 cut(s) 1300, 1395
HpyCH4V TGCA 8 cut(s) 626, 985, 1018, 1074, 1181, 1190, 1256, 1352
HpyF10VI GCNNNNNNNGC 2 cut(s) 1187, 1328
HpyF3I CTNAG 5 cut(s) 83, 215, 231, 495, 1137
HpySE526I ACGT 2 cut(s) 1300, 1395
Hsp92II CATG 4 cut(s) 255, 941, 1013, 1250
KpnI GGTACC 1 cut(s) 47
Ksp22I TGATCA 1 cut(s) 1000
KspAI GTTAAC 1 cut(s) 1126
Kzo9I GATC 5 cut(s) 1000, 1012, 1264, 1423, 1442
LguI GCTCTTC 1 cut(s) 1289
LmnI GCTCC 1 cut(s) 559
Lsp1109I GCAGC 4 cut(s) 472, 826, 1168, 1331
LweI GCATC 2 cut(s) 578, 1083
MaeI CTAG 5 cut(s) 149, 507, 879, 1091, 1268
MaeII ACGT 2 cut(s) 1300, 1395
MaeIII GTNAC 4 cut(s) 521, 562, 802, 964
MalI GATC 5 cut(s) 1002, 1014, 1266, 1425, 1444
MboI GATC 5 cut(s) 1000, 1012, 1264, 1423, 1442
MboII GAAGA 9 cut(s) 171, 176, 216, 371, 1163, 1166, 1205, 1276, 1283
MfeI CAATTG 1 cut(s) 986
MflI RGATCY 2 cut(s) 1423, 1442
MhlI GDGCHC 2 cut(s) 276, 556
MlyI GAGTC 3 cut(s) 96, 215, 595
MmeI TCCRAC 5 cut(s) 131, 343, 362, 766, 1401
Mph1103I ATGCAT 1 cut(s) 1076
MseI TTAA 2 cut(s) 540, 1125
MslI CAYNNNNRTG 3 cut(s) 813, 1023, 1251
MspA1I CMGCKG 2 cut(s) 463, 1159
MspI CCGG 2 cut(s) 41, 431
MspR9I CCNGG 2 cut(s) 1034, 1295
MunI CAATTG 1 cut(s) 986
Mva1269I GAATGC 2 cut(s) 808, 841
MvaI CCWGG 2 cut(s) 1034, 1295
MwoI GCNNNNNNNGC 2 cut(s) 1187, 1328
NcoI CCATGG 2 cut(s) 251, 1246
NdeII GATC 5 cut(s) 1000, 1012, 1264, 1423, 1442
NlaIII CATG 4 cut(s) 255, 941, 1013, 1250
NlaIV GGNNCC 6 cut(s) 45, 555, 863, 954, 1425, 1444
NmuCI GTSAC 2 cut(s) 521, 964
NsiI ATGCAT 1 cut(s) 1076
PciSI GCTCTTC 1 cut(s) 1289
PctI GAATGC 2 cut(s) 808, 841
PfeI GAWTC 6 cut(s) 167, 546, 670, 823, 872, 1210
PflFI GACNNNGTC 1 cut(s) 962
PfoI TCCNGGA 1 cut(s) 1032
PkrI GCNGC 5 cut(s) 7, 462, 841, 1158, 1321
PleI GAGTC 3 cut(s) 95, 215, 595
PmaCI CACGTG 1 cut(s) 1301
PmlI CACGTG 1 cut(s) 1301
PpsI GAGTC 3 cut(s) 95, 215, 595
Ppu21I YACGTR 1 cut(s) 1301
PshAI GACNNNNGTC 1 cut(s) 860
PshBI ATTAAT 1 cut(s) 540
PsiI TTATAA 1 cut(s) 1377
Psp6I CCWGG 2 cut(s) 1032, 1293
PspCI CACGTG 1 cut(s) 1301
PspGI CCWGG 2 cut(s) 1032, 1293
PspN4I GGNNCC 6 cut(s) 45, 555, 863, 954, 1425, 1444
PspPI GGNCC 4 cut(s) 235, 862, 953, 1036
PstNI CAGNNNCTG 1 cut(s) 463
PsuI RGATCY 2 cut(s) 1423, 1442
PsyI GACNNNGTC 1 cut(s) 962
PvuII CAGCTG 2 cut(s) 463, 1159
RsaI GTAC 5 cut(s) 45, 579, 620, 883, 907
RsaNI GTAC 5 cut(s) 44, 578, 619, 882, 906
RseI CAYNNNNRTG 3 cut(s) 813, 1023, 1251
SapI GCTCTTC 1 cut(s) 1289
SaqAI TTAA 2 cut(s) 540, 1125
SatI GCNGC 5 cut(s) 6, 461, 840, 1157, 1320
Sau3AI GATC 5 cut(s) 1000, 1012, 1264, 1423, 1442
Sau96I GGNCC 4 cut(s) 235, 862, 953, 1036
ScaI AGTACT 1 cut(s) 907
SchI GAGTC 3 cut(s) 96, 215, 595
ScrFI CCNGG 2 cut(s) 1034, 1295
SduI GDGCHC 2 cut(s) 276, 556
SfaNI GCATC 2 cut(s) 578, 1083
SinI GGWCC 3 cut(s) 862, 953, 1036
SmiMI CAYNNNNRTG 3 cut(s) 813, 1023, 1251
SmlI CTYRAG 1 cut(s) 96
SmoI CTYRAG 1 cut(s) 96
SsiI CCGC 3 cut(s) 5, 616, 1446
SspMI CTAG 5 cut(s) 149, 507, 879, 1091, 1268
StyD4I CCNGG 2 cut(s) 1032, 1293
StyI CCWWGG 3 cut(s) 251, 674, 1246
TaaI ACNGT 5 cut(s) 478, 568, 964, 1151, 1195
TaiI ACGT 2 cut(s) 1303, 1398
TatI WGTACW 2 cut(s) 881, 905
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 6 cut(s) 167, 546, 670, 823, 872, 1210
Tru1I TTAA 2 cut(s) 540, 1125
Tru9I TTAA 2 cut(s) 540, 1125
TscAI CASTG 3 cut(s) 292, 643, 987
TseFI GTSAC 2 cut(s) 521, 964
TseI GCWGC 4 cut(s) 460, 839, 1156, 1319
Tsp45I GTSAC 2 cut(s) 521, 964
TspDTI ATGAA 3 cut(s) 180, 289, 1400
TspRI CASTG 3 cut(s) 292, 643, 987
Tth111I GACNNNGTC 1 cut(s) 962
VpaK11BI GGWCC 3 cut(s) 862, 953, 1036
VspI ATTAAT 1 cut(s) 540
XapI RAATTY 3 cut(s) 369, 415, 763
XbaI TCTAGA 1 cut(s) 1267
XspI CTAG 5 cut(s) 149, 507, 879, 1091, 1268
ZrmI AGTACT 1 cut(s) 907
Zsp2I ATGCAT 1 cut(s) 1076
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.