Rh6BG170600

Protein ABCI7, chloroplastic-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Forward (+)
28179201 .. 28183582
4382 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG170600.1

Sequence Viewer

Length: 1452 bp
ATGGCTGCCATAGCATTTACACCCCAGGTTCAAAGACCTCCCCTACCCTTATTTTCCACACCCAAAACCCCAAAACCTAAAACCAGAGTTTCTCTCCAACCTTCTTCTTCTTCTTCTTCTTCAACAACTTCACAGCTGTCCTACGACCCCTTCGTTCACCAACTCGCCGAGTCTCTCGACGACTCACTCCCCTCCTCCTCCTCCTCTTCTTCCTCATCTCTCCAAAGCCTCAGAGACTCTTCCGTTCAAACCGTCCTCTCAACCCCATGGCCTACGCGCAAAGACGAGCCCTTTCGATTCACCGACACCTCCTTCATCAAGAACTCTCAAATCACGCCAATCTCTCGCCCACCAAGCTTTCCGACCACGCCGGACGATGCCCAGTTCCCAAGTTTGGATATTGTCGATGGTTTCCTTGTGAATTTGTCAAATTTGGGTGAATTGCCCAATGGGGTTTATGTGGGTAGCTTGCTGGAGCTTTCAGACGAGACAATCCTGAAAAGGGTGTCTGAGTTTTTGTCCACTAGTTCTCAGGGAGACTTGTTTTGGTCCATTAATGGAATTGGGGCGCCGGATTTGACTGTGGTTTATGTTCCGGCAGGGTGCCGGGTAGAGAGTCCTATTTACTTGCGCTACTTTGCCAATGAAGGAGGTGACATCGGGTCACATAAGCTGCCTTTATCGAATCCGAGGGTGCTTGTGTTGGTGGAGAAGGGAGGGGAGATTGGTGTGGTTGAGGAGTTTTTGGGTGGGGATGGGGATAAGGCTTATTGGGTTAACTCTGTTTTGGAGGTTGTGGTTGGAGAAGGAGGGAAAGTTAGGCATTCTTATGTTCAGAACCAGTCTGTAAATGCTGCCCACATCAAGTGGACTTCGGTTCGCCAGGAATCAGCCAGTACATATGAGCTTGTCGAGATTAGCACTGGTGGAAGGTTGAGCAGGCACAATCTCCATGTTCAGCAACTGGGACCTGACACAATCACCGAGTTATCAACCCTGCACTTGTCTGCCGGGGATCAAACACAAGATCTACATAGTAGCATAGTCCTTGACCATCCACGAGGTTATTCCAGACAACTTCATAAGTGCATTGTGTCTCATTCTGAAGGAAAAGCCGTCTTTGATGGGAATGTAAAGGTCAACAGATATGCACAACAGACAGATGGTGGGCAACTAACAAGAAGTCTTCTTCTTGCACCCCGTGCCACCGTAAATGTTAAACCAAATCTTCAGATCATTGCTGATGATGTCAAGTGTTCCCATGGAGCTGCAATTAGTGACCTAGAAGAAACCCAGCTCTTTTATTTCCTGGCACGCGGGATCAGTTTAGAGGCAGCAAGAAGGGCTCTTGTCTATTCCTTTGGCGCTGAGGTGATTGAAGGATTACCTTATCCTTGGATAAAGACGAGGGTAGAAAGTCAAATTAAAGAATTGTTGGAAGGATCCTCATAA

Protein Analysis

483

Amino Acids

52.58

Weight (kDa)

5.59

Isoelectric Point (pI)

42.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SufBD_N PF19295 67 - 209 4.7e-07 SufBD protein N-terminal region
SUFBD_core PF01458 227 - 454 7.8e-68 SUF system FeS cluster assembly, SufBD core domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 568, 603
AccII CGCG 2 cut(s) 277, 1317
AciI CCGC 1 cut(s) 1317
AclWI GGATC 4 cut(s) 1023, 1328, 1437, 1450
AcsI RAATTY 2 cut(s) 421, 430
AcuI CTGAAG 2 cut(s) 1125, 1214
AcyI GRCGYC 1 cut(s) 569
AdeI CACNNNGTG 1 cut(s) 1202
AfaI GTAC 1 cut(s) 898
AfiI CCNNNNNNNGG 2 cut(s) 394, 502
AgsI TTSAA 4 cut(s) 32, 123, 248, 1379
AhdI GACNNNNNGTC 1 cut(s) 661
AhlI ACTAGT 1 cut(s) 524
AjnI CCWGG 3 cut(s) 24, 882, 1308
AluBI AGCT 8 cut(s) 136, 357, 468, 478, 673, 907, 1268, 1297
AluI AGCT 8 cut(s) 136, 357, 468, 478, 673, 907, 1268, 1297
Alw26I GTCTC 5 cut(s) 177, 228, 482, 531, 1101
AlwI GGATC 4 cut(s) 1023, 1328, 1437, 1450
AlwNI CAGNNNCTG 1 cut(s) 964
AoxI GGCC 1 cut(s) 269
ApeKI GCWGC 5 cut(s) 5, 673, 854, 1268, 1334
ApoI RAATTY 2 cut(s) 421, 430
AseI ATTAAT 1 cut(s) 555
AspLEI GCGC 4 cut(s) 279, 571, 633, 1367
AspS9I GGNCC 2 cut(s) 549, 968
AsuC2I CCSGG 2 cut(s) 608, 1012
AsuHPI GGTGA 6 cut(s) 149, 292, 449, 665, 973, 1384
AvaII GGWCC 2 cut(s) 549, 968
BamHI GGATCC 1 cut(s) 1442
BanI GGYRCC 2 cut(s) 568, 603
BanII GRGCYC 2 cut(s) 291, 1348
BauI CACGAG 1 cut(s) 1059
BbsI GAAGAC 1 cut(s) 1178
BbvCI CCTCAGC 1 cut(s) 1368
BbvI GCAGC 4 cut(s) 660, 841, 1255, 1346
BccI CCATC 5 cut(s) 401, 749, 1062, 1118, 1157
BceAI ACGGC 1 cut(s) 1100
BciT130I CCWGG 3 cut(s) 26, 884, 1310
BcnI CCSGG 2 cut(s) 608, 1012
BcoDI GTCTC 5 cut(s) 177, 228, 482, 531, 1101
BcuI ACTAGT 1 cut(s) 524
BfaI CTAG 2 cut(s) 525, 1283
BfoI RGCGCY 2 cut(s) 572, 1368
BglII AGATCT 1 cut(s) 1027
BisI GCNGC 5 cut(s) 6, 674, 855, 1269, 1335
BlsI GCNGC 5 cut(s) 7, 675, 856, 1270, 1336
Bme1390I CCNGG 5 cut(s) 26, 608, 884, 1012, 1310
Bme18I GGWCC 2 cut(s) 549, 968
BmeRI GACNNNNNGTC 1 cut(s) 661
BmgT120I GGNCC 2 cut(s) 549, 968
BmiI GGNNCC 4 cut(s) 570, 605, 969, 1444
BmrFI CCNGG 5 cut(s) 26, 608, 884, 1012, 1310
BmrI ACTGGG 2 cut(s) 376, 974
BmsI GCATC 1 cut(s) 367
BmuI ACTGGG 2 cut(s) 376, 974
BpiI GAAGAC 1 cut(s) 1178
BplI GAGNNNNNCTC 2 cut(s) 78, 110
BpmI CTGGAG 1 cut(s) 494
Bpu10I CCTNAGC 1 cut(s) 1368
BpuMI CCSGG 2 cut(s) 608, 1012
BsaHI GRCGYC 1 cut(s) 569
BsaJI CCNNGG 6 cut(s) 24, 266, 689, 1011, 1261, 1394
BsaXI ACNNNNNCTCC 2 cut(s) 801, 831
Bsc4I CCNNNNNNNGG 2 cut(s) 394, 502
Bse1I ACTGG 5 cut(s) 382, 841, 894, 928, 969
Bse3DI GCAATG 1 cut(s) 1236
BseBI CCWGG 3 cut(s) 26, 884, 1310
BseDI CCNNGG 6 cut(s) 24, 266, 689, 1011, 1261, 1394
BseGI GGATG 2 cut(s) 760, 1054
BseLI CCNNNNNNNGG 2 cut(s) 394, 502
BseMI GCAATG 1 cut(s) 1236
BseMII CTCAG 4 cut(s) 244, 501, 545, 1359
BseNI ACTGG 5 cut(s) 382, 841, 894, 928, 969
BseRI GAGGAG 5 cut(s) 184, 187, 190, 193, 752
BseXI GCAGC 4 cut(s) 660, 841, 1255, 1346
BseYI CCCAGC 1 cut(s) 1293
BsgI GTGCAG 1 cut(s) 983
Bsh1236I CGCG 2 cut(s) 277, 1317
BshFI GGCC 1 cut(s) 271
BshNI GGYRCC 2 cut(s) 568, 603
BsiSI CCGG 5 cut(s) 371, 572, 596, 607, 1011
BslFI GGGAC 1 cut(s) 981
BslI CCNNNNNNNGG 2 cut(s) 394, 502
BsmAI GTCTC 5 cut(s) 177, 228, 482, 531, 1101
BsmFI GGGAC 1 cut(s) 981
BsmI GAATGC 1 cut(s) 823
BsnI GGCC 1 cut(s) 271
Bsp1286I GDGCHC 2 cut(s) 291, 1348
Bsp143I GATC 5 cut(s) 1015, 1027, 1233, 1320, 1442
Bsp19I CCATGG 2 cut(s) 266, 1261
BspACI CCGC 1 cut(s) 1317
BspANI GGCC 1 cut(s) 271
BspCNI CTCAG 4 cut(s) 243, 502, 544, 1360
BspFNI CGCG 2 cut(s) 277, 1317
BspLI GGNNCC 4 cut(s) 570, 605, 969, 1444
BspPI GGATC 4 cut(s) 1023, 1328, 1437, 1450
BspT107I GGYRCC 2 cut(s) 568, 603
BsrDI GCAATG 1 cut(s) 1236
BsrI ACTGG 5 cut(s) 382, 841, 894, 928, 969
BssECI CCNNGG 6 cut(s) 24, 266, 689, 1011, 1261, 1394
BssMI GATC 5 cut(s) 1015, 1027, 1233, 1320, 1442
BssNI GRCGYC 1 cut(s) 569
BssSI CACGAG 1 cut(s) 1059
BssT1I CCWWGG 3 cut(s) 266, 1261, 1394
Bst2BI CACGAG 1 cut(s) 1059
Bst2UI CCWGG 3 cut(s) 26, 884, 1310
Bst4CI ACNGT 3 cut(s) 253, 583, 1210
Bst6I CTCTTC 2 cut(s) 211, 244
BstACI GRCGYC 1 cut(s) 569
BstAPI GCANNNNNTGC 1 cut(s) 1202
BstC8I GCNNGC 3 cut(s) 470, 941, 1315
BstDEI CTNAG 4 cut(s) 230, 510, 531, 1368
BstDSI CCRYGG 2 cut(s) 266, 1261
BstF5I GGATG 2 cut(s) 760, 1054
BstFNI CGCG 2 cut(s) 277, 1317
BstH2I RGCGCY 2 cut(s) 572, 1368
BstHHI GCGC 4 cut(s) 279, 571, 633, 1367
BstKTI GATC 5 cut(s) 1018, 1030, 1236, 1323, 1445
BstMAI GTCTC 5 cut(s) 177, 228, 482, 531, 1101
BstMBI GATC 5 cut(s) 1015, 1027, 1233, 1320, 1442
BstMWI GCNNNNNNNGC 4 cut(s) 11, 354, 1202, 1343
BstNI CCWGG 3 cut(s) 26, 884, 1310
BstSCI CCNGG 5 cut(s) 24, 606, 882, 1010, 1308
BstUI CGCG 2 cut(s) 277, 1317
BstV1I GCAGC 4 cut(s) 660, 841, 1255, 1346
BstV2I GAAGAC 1 cut(s) 1178
BstX2I RGATCY 2 cut(s) 1027, 1442
BstYI RGATCY 2 cut(s) 1027, 1442
BsuRI GGCC 1 cut(s) 271
BtgI CCRYGG 2 cut(s) 266, 1261
BtsCI GGATG 2 cut(s) 760, 1054
BtsIMutI CAGTG 1 cut(s) 921
Cac8I GCNNGC 3 cut(s) 470, 941, 1315
CaiI CAGNNNCTG 1 cut(s) 964
CfoI GCGC 4 cut(s) 279, 571, 633, 1367
Cfr13I GGNCC 2 cut(s) 549, 968
Csp6I GTAC 1 cut(s) 897
CviAII CATG 3 cut(s) 267, 953, 1262
CviQI GTAC 1 cut(s) 897
DdeI CTNAG 4 cut(s) 230, 510, 531, 1368
DinI GGCGCC 1 cut(s) 570
DpnI GATC 5 cut(s) 1017, 1029, 1235, 1322, 1444
DpnII GATC 5 cut(s) 1015, 1027, 1233, 1320, 1442
DraIII CACNNNGTG 1 cut(s) 1202
DriI GACNNNNNGTC 1 cut(s) 661
Eam1104I CTCTTC 2 cut(s) 211, 244
Eam1105I GACNNNNNGTC 1 cut(s) 661
EarI CTCTTC 2 cut(s) 211, 244
Eco130I CCWWGG 3 cut(s) 266, 1261, 1394
Eco24I GRGCYC 2 cut(s) 291, 1348
Eco47I GGWCC 2 cut(s) 549, 968
Eco57I CTGAAG 2 cut(s) 1125, 1214
EcoO109I RGGNCCY 1 cut(s) 968
EcoRII CCWGG 3 cut(s) 24, 882, 1308
EcoT14I CCWWGG 3 cut(s) 266, 1261, 1394
EcoT38I GRGCYC 2 cut(s) 291, 1348
EgeI GGCGCC 1 cut(s) 570
EheI GGCGCC 1 cut(s) 570
ErhI CCWWGG 3 cut(s) 266, 1261, 1394
FaeI CATG 3 cut(s) 270, 956, 1265
FaqI GGGAC 1 cut(s) 981
FatI CATG 3 cut(s) 266, 952, 1261
FauI CCCGC 1 cut(s) 1310
FauNDI CATATG 1 cut(s) 901
Fnu4HI GCNGC 5 cut(s) 6, 674, 855, 1269, 1335
FokI GGATG 2 cut(s) 767, 1041
FriOI GRGCYC 2 cut(s) 291, 1348
Fsp4HI GCNGC 5 cut(s) 6, 674, 855, 1269, 1335
FspBI CTAG 2 cut(s) 525, 1283
GlaI GCGC 4 cut(s) 278, 570, 632, 1366
GluI GCNGC 5 cut(s) 6, 674, 855, 1269, 1335
GsaI CCCAGC 1 cut(s) 1297
GsuI CTGGAG 1 cut(s) 494
HaeII RGCGCY 2 cut(s) 572, 1368
HaeIII GGCC 1 cut(s) 271
HapII CCGG 5 cut(s) 371, 572, 596, 607, 1011
HhaI GCGC 4 cut(s) 279, 571, 633, 1367
Hin1I GRCGYC 1 cut(s) 569
Hin1II CATG 3 cut(s) 270, 956, 1265
Hin6I GCGC 4 cut(s) 277, 569, 631, 1365
HinP1I GCGC 4 cut(s) 277, 569, 631, 1365
HincII GTYRAC 2 cut(s) 778, 1141
HindII GTYRAC 2 cut(s) 778, 1141
HindIII AAGCTT 1 cut(s) 355
HinfI GANTC 7 cut(s) 170, 182, 236, 297, 616, 685, 887
HpaI GTTAAC 1 cut(s) 778
HpaII CCGG 5 cut(s) 371, 572, 596, 607, 1011
HphI GGTGA 6 cut(s) 149, 292, 449, 665, 973, 1384
Hpy166II GTNNAC 5 cut(s) 157, 522, 778, 870, 1141
Hpy188I TCNGA 8 cut(s) 233, 363, 484, 511, 690, 837, 1105, 1233
Hpy188III TCNNGA 5 cut(s) 176, 319, 496, 913, 1071
Hpy8I GTNNAC 5 cut(s) 157, 522, 778, 870, 1141
Hpy99I CGWCG 1 cut(s) 182
HpyCH4III ACNGT 3 cut(s) 253, 583, 1210
HpyCH4V TGCA 5 cut(s) 1000, 1089, 1151, 1196, 1271
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 354, 1202, 1343
HpyF3I CTNAG 4 cut(s) 230, 510, 531, 1368
Hsp92I GRCGYC 1 cut(s) 569
Hsp92II CATG 3 cut(s) 270, 956, 1265
HspAI GCGC 4 cut(s) 277, 569, 631, 1365
KasI GGCGCC 1 cut(s) 568
KspAI GTTAAC 1 cut(s) 778
Kzo9I GATC 5 cut(s) 1015, 1027, 1233, 1320, 1442
LmnI GCTCC 2 cut(s) 475, 1265
Lsp1109I GCAGC 4 cut(s) 660, 841, 1255, 1346
LweI GCATC 1 cut(s) 367
MaeI CTAG 2 cut(s) 525, 1283
MaeIII GTNAC 3 cut(s) 653, 663, 1277
MalI GATC 5 cut(s) 1017, 1029, 1235, 1322, 1444
MboI GATC 5 cut(s) 1015, 1027, 1233, 1320, 1442
MflI RGATCY 2 cut(s) 1027, 1442
MhlI GDGCHC 2 cut(s) 291, 1348
MluCI AATT 7 cut(s) 421, 430, 440, 561, 1272, 1422, 1430
Mly113I GGCGCC 1 cut(s) 569
MlyI GAGTC 4 cut(s) 176, 179, 230, 625
MmeI TCCRAC 4 cut(s) 121, 386, 781, 1416
MseI TTAA 4 cut(s) 555, 777, 1218, 1425
MslI CAYNNNNRTG 1 cut(s) 828
MspA1I CMGCKG 1 cut(s) 136
MspI CCGG 5 cut(s) 371, 572, 596, 607, 1011
MspR9I CCNGG 5 cut(s) 26, 608, 884, 1012, 1310
Mva1269I GAATGC 1 cut(s) 823
MvaI CCWGG 3 cut(s) 26, 884, 1310
MvnI CGCG 2 cut(s) 277, 1317
MwoI GCNNNNNNNGC 4 cut(s) 11, 354, 1202, 1343
NarI GGCGCC 1 cut(s) 569
NciI CCSGG 2 cut(s) 608, 1012
NcoI CCATGG 2 cut(s) 266, 1261
NdeI CATATG 1 cut(s) 901
NdeII GATC 5 cut(s) 1015, 1027, 1233, 1320, 1442
NlaIII CATG 3 cut(s) 270, 956, 1265
NlaIV GGNNCC 4 cut(s) 570, 605, 969, 1444
NmeAIII GCCGAG 1 cut(s) 193
NmuCI GTSAC 3 cut(s) 653, 663, 1277
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PctI GAATGC 1 cut(s) 823
PfeI GAWTC 3 cut(s) 297, 685, 887
PkrI GCNGC 5 cut(s) 7, 675, 856, 1270, 1336
PleI GAGTC 4 cut(s) 176, 178, 230, 624
PluTI GGCGCC 1 cut(s) 572
PpsI GAGTC 4 cut(s) 176, 178, 230, 624
PpuMI RGGWCCY 1 cut(s) 968
PshBI ATTAAT 1 cut(s) 555
Psp5II RGGWCCY 1 cut(s) 968
Psp6I CCWGG 3 cut(s) 24, 882, 1308
PspFI CCCAGC 1 cut(s) 1293
PspGI CCWGG 3 cut(s) 24, 882, 1308
PspN4I GGNNCC 4 cut(s) 570, 605, 969, 1444
PspPI GGNCC 2 cut(s) 549, 968
PspPPI RGGWCCY 1 cut(s) 968
PstNI CAGNNNCTG 1 cut(s) 964
PsuI RGATCY 2 cut(s) 1027, 1442
PvuII CAGCTG 1 cut(s) 136
RsaI GTAC 1 cut(s) 898
RsaNI GTAC 1 cut(s) 897
RseI CAYNNNNRTG 1 cut(s) 828
SaqAI TTAA 4 cut(s) 555, 777, 1218, 1425
SatI GCNGC 5 cut(s) 6, 674, 855, 1269, 1335
Sau3AI GATC 5 cut(s) 1015, 1027, 1233, 1320, 1442
Sau96I GGNCC 2 cut(s) 549, 968
SchI GAGTC 4 cut(s) 176, 179, 230, 625
ScrFI CCNGG 5 cut(s) 26, 608, 884, 1012, 1310
SduI GDGCHC 2 cut(s) 291, 1348
SfaNI GCATC 1 cut(s) 367
SfoI GGCGCC 1 cut(s) 570
SinI GGWCC 2 cut(s) 549, 968
SmiMI CAYNNNNRTG 1 cut(s) 828
SpeI ACTAGT 1 cut(s) 524
Sse9I AATT 7 cut(s) 421, 430, 440, 561, 1272, 1422, 1430
SsiI CCGC 1 cut(s) 1317
SspDI GGCGCC 1 cut(s) 568
SspMI CTAG 2 cut(s) 525, 1283
StyD4I CCNGG 5 cut(s) 24, 606, 882, 1010, 1308
StyI CCWWGG 3 cut(s) 266, 1261, 1394
TaaI ACNGT 3 cut(s) 253, 583, 1210
TaqI TCGA 5 cut(s) 177, 295, 405, 683, 912
TasI AATT 7 cut(s) 421, 430, 440, 561, 1272, 1422, 1430
TatI WGTACW 1 cut(s) 896
TfiI GAWTC 3 cut(s) 297, 685, 887
Tru1I TTAA 4 cut(s) 555, 777, 1218, 1425
Tru9I TTAA 4 cut(s) 555, 777, 1218, 1425
TscAI CASTG 1 cut(s) 928
TseFI GTSAC 3 cut(s) 653, 663, 1277
TseI GCWGC 5 cut(s) 5, 673, 854, 1268, 1334
Tsp45I GTSAC 3 cut(s) 653, 663, 1277
TspDTI ATGAA 3 cut(s) 304, 660, 1070
TspGWI ACGGA 1 cut(s) 232
TspRI CASTG 1 cut(s) 928
VpaK11BI GGWCC 2 cut(s) 549, 968
VspI ATTAAT 1 cut(s) 555
XapI RAATTY 2 cut(s) 421, 430
XspI CTAG 2 cut(s) 525, 1283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.