Rh6DG155700

Protein ABCI7, chloroplastic-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Forward (+)
23409550 .. 23413499
3950 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG155700.1

Sequence Viewer

Length: 1443 bp
ATGGCTGCCATAGCATTTACACCCCAGGTTCAAAGACCTCCCCTATCCTTATTTTCCACACCCAAAACCCCAAAACCTAAAACCAGAGTTTCTCTCCAACCTTCTTCTTCTTCTTCAACTTCACAGCTGTCCTACGACCCCTTCGTTCACCAACTCGCCGAGTCTCTCGACGACTCACTCCCCTCCTCCTCCTCTTCTTCTTCCTCATCTCTCCAAAGCCTCAGAGACTCTTCCGTTCAAACCGTCCTCTCAACCCCATGGCCTACGCGCAAAGACGAGCCCTTTCGATTCACCGACACCTCCTTCATCAAGAACTCTCAAATCACGCCAATCTCTCGCCCACCAAGCTTTCCAACCACGCCGGACGATACCCAGTTCCCAAGTTTGGATATTGTCGATGGTTTCCTTGTGAATTTGTCAAATTTGGGTGAATTGCCCAATGGGGTTTATGTGGGTAGCTTGCTGGAGCTTTCAGACGAGACAATCCTGAAAAGGGTGTCTGAGTTTTTGTCCAGTAATTCTCAGGGAGACTTGTTTTGGTCCATTAATGGAATTGGGGCGCCGGATTTGACTGTGGTTTATGTTCCGGCAGGGTGCCGGGTAGAGAGTCCTATTTACTTGCGCTACTTTGCCAATGAAGGAGGTGACATTGGGTCACATAAGCTGCCTTTATCGAATCCGAGGGTGCTTGTATTGGTGGAGAAGGGAGGGGAGATTGGTGTGATTGAGGAGTTTTTGGGTGGGGATGGGGATAAGGCTTATTGGGTTAACTCTGTTCTGGAGGTTGTGGTTGGAGAAGGAGGGAAAGTTAGGCATTCTTATGTTCAGAACCAGTCTGTAAATGCTGCCCACATCAAGTGGACTTCGGTTCGCCAGGAATCAGCCAGTACATATGAGCTTGTCGAGATTAGCACTGGTGGAAAGTTGAGCAGGCACAATCTCCATGTTCAGCAACTGGGACCTGACACAATCACCGAGTTATCAACCCTGCACTTGTCTGCCGGGGATCAAACACAAGATCTACATAGTAGCATAGTCCTTGACCATCCACGAGGTTATTCCAGACAACTTCATAAGTGCATTGTGTCTCATTCTGAAGGAAAAGCCGTCTTTGATGGGAATGTAAAGGTCAACAGATATGCACAACAGACAGATGGTGGGCAACTAACAAGAAGTCTTCTTCTTGCACCCCGTGCCACCGTAAATGTTAAACCAAATCTTCAGATCATTGCTGATGATGTCAAGTGTTCCCATGGAGCTGCAATTAGTGACCTAGAAGAAACCCAGCTCTTTTATTTCCTGGCACGTGGGATCAGTTTAAAGGCAGCAAGAAGGGCTCTTGTCTATTCCTTTGGCGCTGAGGTGATTGAAGGATTACCTTATCCTTGGATAAAGACGAAGGTAGAGAGTCAAATTAAAGAATTGTTGGAAGGATCCTCATAA

Protein Analysis

480

Amino Acids

52.29

Weight (kDa)

5.77

Isoelectric Point (pI)

41.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SufBD_N PF19295 64 - 206 3.6e-07 SufBD protein N-terminal region
SUFBD_core PF01458 224 - 451 4.7e-68 SUF system FeS cluster assembly, SufBD core domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 559, 594
AccII CGCG 1 cut(s) 268
AclWI GGATC 4 cut(s) 1014, 1319, 1428, 1441
AcsI RAATTY 2 cut(s) 412, 421
AcuI CTGAAG 2 cut(s) 1116, 1205
AcvI CACGTG 1 cut(s) 1307
AcyI GRCGYC 1 cut(s) 560
AdeI CACNNNGTG 1 cut(s) 1193
AfaI GTAC 1 cut(s) 889
AfiI CCNNNNNNNGG 2 cut(s) 385, 493
AgsI TTSAA 4 cut(s) 32, 117, 239, 1370
AhdI GACNNNNNGTC 1 cut(s) 652
AjnI CCWGG 3 cut(s) 24, 873, 1299
AluBI AGCT 8 cut(s) 127, 348, 459, 469, 664, 898, 1259, 1288
AluI AGCT 8 cut(s) 127, 348, 459, 469, 664, 898, 1259, 1288
Alw26I GTCTC 5 cut(s) 168, 219, 473, 522, 1092
AlwI GGATC 4 cut(s) 1014, 1319, 1428, 1441
AlwNI CAGNNNCTG 1 cut(s) 955
AoxI GGCC 1 cut(s) 260
ApeKI GCWGC 5 cut(s) 5, 664, 845, 1259, 1325
ApoI RAATTY 2 cut(s) 412, 421
AseI ATTAAT 1 cut(s) 546
AspLEI GCGC 4 cut(s) 270, 562, 624, 1358
AspS9I GGNCC 2 cut(s) 540, 959
AsuC2I CCSGG 2 cut(s) 599, 1003
AsuHPI GGTGA 6 cut(s) 140, 283, 440, 656, 964, 1375
AvaII GGWCC 2 cut(s) 540, 959
BamHI GGATCC 1 cut(s) 1433
BanI GGYRCC 2 cut(s) 559, 594
BanII GRGCYC 2 cut(s) 282, 1339
BauI CACGAG 1 cut(s) 1050
BbrPI CACGTG 1 cut(s) 1307
BbsI GAAGAC 1 cut(s) 1169
BbvCI CCTCAGC 1 cut(s) 1359
BbvI GCAGC 4 cut(s) 651, 832, 1246, 1337
BccI CCATC 5 cut(s) 392, 740, 1053, 1109, 1148
BceAI ACGGC 1 cut(s) 1091
BciT130I CCWGG 3 cut(s) 26, 875, 1301
BcnI CCSGG 2 cut(s) 599, 1003
BcoDI GTCTC 5 cut(s) 168, 219, 473, 522, 1092
BfaI CTAG 1 cut(s) 1274
BfoI RGCGCY 2 cut(s) 563, 1359
BglII AGATCT 1 cut(s) 1018
BisI GCNGC 5 cut(s) 6, 665, 846, 1260, 1326
BlsI GCNGC 5 cut(s) 7, 666, 847, 1261, 1327
Bme1390I CCNGG 5 cut(s) 26, 599, 875, 1003, 1301
Bme18I GGWCC 2 cut(s) 540, 959
BmeRI GACNNNNNGTC 1 cut(s) 652
BmgT120I GGNCC 2 cut(s) 540, 959
BmiI GGNNCC 4 cut(s) 561, 596, 960, 1435
BmrFI CCNGG 5 cut(s) 26, 599, 875, 1003, 1301
BmrI ACTGGG 2 cut(s) 367, 965
BmuI ACTGGG 2 cut(s) 367, 965
BpiI GAAGAC 1 cut(s) 1169
BplI GAGNNNNNCTC 2 cut(s) 78, 110
BpmI CTGGAG 2 cut(s) 485, 800
Bpu10I CCTNAGC 1 cut(s) 1359
BpuMI CCSGG 2 cut(s) 599, 1003
BsaAI YACGTR 1 cut(s) 1307
BsaHI GRCGYC 1 cut(s) 560
BsaJI CCNNGG 6 cut(s) 24, 257, 680, 1002, 1252, 1385
BsaXI ACNNNNNCTCC 2 cut(s) 792, 822
Bsc4I CCNNNNNNNGG 2 cut(s) 385, 493
Bse1I ACTGG 6 cut(s) 373, 513, 832, 885, 919, 960
Bse3DI GCAATG 1 cut(s) 1227
BseBI CCWGG 3 cut(s) 26, 875, 1301
BseDI CCNNGG 6 cut(s) 24, 257, 680, 1002, 1252, 1385
BseGI GGATG 2 cut(s) 751, 1045
BseLI CCNNNNNNNGG 2 cut(s) 385, 493
BseMI GCAATG 1 cut(s) 1227
BseMII CTCAG 4 cut(s) 235, 492, 536, 1350
BseNI ACTGG 6 cut(s) 373, 513, 832, 885, 919, 960
BseRI GAGGAG 4 cut(s) 175, 178, 181, 743
BseXI GCAGC 4 cut(s) 651, 832, 1246, 1337
BseYI CCCAGC 1 cut(s) 1284
BsgI GTGCAG 1 cut(s) 974
Bsh1236I CGCG 1 cut(s) 268
BshFI GGCC 1 cut(s) 262
BshNI GGYRCC 2 cut(s) 559, 594
BsiSI CCGG 5 cut(s) 362, 563, 587, 598, 1002
BslFI GGGAC 1 cut(s) 972
BslI CCNNNNNNNGG 2 cut(s) 385, 493
BsmAI GTCTC 5 cut(s) 168, 219, 473, 522, 1092
BsmFI GGGAC 1 cut(s) 972
BsmI GAATGC 1 cut(s) 814
BsnI GGCC 1 cut(s) 262
Bsp1286I GDGCHC 2 cut(s) 282, 1339
Bsp143I GATC 5 cut(s) 1006, 1018, 1224, 1311, 1433
Bsp19I CCATGG 2 cut(s) 257, 1252
BspANI GGCC 1 cut(s) 262
BspCNI CTCAG 4 cut(s) 234, 493, 535, 1351
BspFNI CGCG 1 cut(s) 268
BspLI GGNNCC 4 cut(s) 561, 596, 960, 1435
BspPI GGATC 4 cut(s) 1014, 1319, 1428, 1441
BspT107I GGYRCC 2 cut(s) 559, 594
BsrDI GCAATG 1 cut(s) 1227
BsrI ACTGG 6 cut(s) 373, 513, 832, 885, 919, 960
BssECI CCNNGG 6 cut(s) 24, 257, 680, 1002, 1252, 1385
BssMI GATC 5 cut(s) 1006, 1018, 1224, 1311, 1433
BssNI GRCGYC 1 cut(s) 560
BssSI CACGAG 1 cut(s) 1050
BssT1I CCWWGG 3 cut(s) 257, 1252, 1385
Bst2BI CACGAG 1 cut(s) 1050
Bst2UI CCWGG 3 cut(s) 26, 875, 1301
Bst4CI ACNGT 3 cut(s) 244, 574, 1201
Bst6I CTCTTC 2 cut(s) 199, 235
BstACI GRCGYC 1 cut(s) 560
BstAPI GCANNNNNTGC 1 cut(s) 1193
BstBAI YACGTR 1 cut(s) 1307
BstC8I GCNNGC 2 cut(s) 461, 932
BstDEI CTNAG 4 cut(s) 221, 501, 522, 1359
BstDSI CCRYGG 2 cut(s) 257, 1252
BstF5I GGATG 2 cut(s) 751, 1045
BstFNI CGCG 1 cut(s) 268
BstH2I RGCGCY 2 cut(s) 563, 1359
BstHHI GCGC 4 cut(s) 270, 562, 624, 1358
BstKTI GATC 5 cut(s) 1009, 1021, 1227, 1314, 1436
BstMAI GTCTC 5 cut(s) 168, 219, 473, 522, 1092
BstMBI GATC 5 cut(s) 1006, 1018, 1224, 1311, 1433
BstMWI GCNNNNNNNGC 4 cut(s) 11, 345, 1193, 1334
BstNI CCWGG 3 cut(s) 26, 875, 1301
BstSCI CCNGG 5 cut(s) 24, 597, 873, 1001, 1299
BstUI CGCG 1 cut(s) 268
BstV1I GCAGC 4 cut(s) 651, 832, 1246, 1337
BstV2I GAAGAC 1 cut(s) 1169
BstX2I RGATCY 2 cut(s) 1018, 1433
BstYI RGATCY 2 cut(s) 1018, 1433
BsuRI GGCC 1 cut(s) 262
BtgI CCRYGG 2 cut(s) 257, 1252
BtsCI GGATG 2 cut(s) 751, 1045
BtsIMutI CAGTG 1 cut(s) 912
Cac8I GCNNGC 2 cut(s) 461, 932
CaiI CAGNNNCTG 1 cut(s) 955
CfoI GCGC 4 cut(s) 270, 562, 624, 1358
Cfr13I GGNCC 2 cut(s) 540, 959
Csp6I GTAC 1 cut(s) 888
CviAII CATG 3 cut(s) 258, 944, 1253
CviQI GTAC 1 cut(s) 888
DdeI CTNAG 4 cut(s) 221, 501, 522, 1359
DinI GGCGCC 1 cut(s) 561
DpnI GATC 5 cut(s) 1008, 1020, 1226, 1313, 1435
DpnII GATC 5 cut(s) 1006, 1018, 1224, 1311, 1433
DraI TTTAAA 1 cut(s) 1320
DraIII CACNNNGTG 1 cut(s) 1193
DriI GACNNNNNGTC 1 cut(s) 652
Eam1104I CTCTTC 2 cut(s) 199, 235
Eam1105I GACNNNNNGTC 1 cut(s) 652
EarI CTCTTC 2 cut(s) 199, 235
Eco130I CCWWGG 3 cut(s) 257, 1252, 1385
Eco24I GRGCYC 2 cut(s) 282, 1339
Eco47I GGWCC 2 cut(s) 540, 959
Eco57I CTGAAG 2 cut(s) 1116, 1205
Eco72I CACGTG 1 cut(s) 1307
EcoO109I RGGNCCY 1 cut(s) 959
EcoRII CCWGG 3 cut(s) 24, 873, 1299
EcoT14I CCWWGG 3 cut(s) 257, 1252, 1385
EcoT38I GRGCYC 2 cut(s) 282, 1339
EgeI GGCGCC 1 cut(s) 561
EheI GGCGCC 1 cut(s) 561
ErhI CCWWGG 3 cut(s) 257, 1252, 1385
FaeI CATG 3 cut(s) 261, 947, 1256
FaqI GGGAC 1 cut(s) 972
FatI CATG 3 cut(s) 257, 943, 1252
FauNDI CATATG 1 cut(s) 892
Fnu4HI GCNGC 5 cut(s) 6, 665, 846, 1260, 1326
FokI GGATG 2 cut(s) 758, 1032
FriOI GRGCYC 2 cut(s) 282, 1339
Fsp4HI GCNGC 5 cut(s) 6, 665, 846, 1260, 1326
FspBI CTAG 1 cut(s) 1274
GlaI GCGC 4 cut(s) 269, 561, 623, 1357
GluI GCNGC 5 cut(s) 6, 665, 846, 1260, 1326
GsaI CCCAGC 1 cut(s) 1288
GsuI CTGGAG 2 cut(s) 485, 800
HaeII RGCGCY 2 cut(s) 563, 1359
HaeIII GGCC 1 cut(s) 262
HapII CCGG 5 cut(s) 362, 563, 587, 598, 1002
HhaI GCGC 4 cut(s) 270, 562, 624, 1358
Hin1I GRCGYC 1 cut(s) 560
Hin1II CATG 3 cut(s) 261, 947, 1256
Hin6I GCGC 4 cut(s) 268, 560, 622, 1356
HinP1I GCGC 4 cut(s) 268, 560, 622, 1356
HincII GTYRAC 2 cut(s) 769, 1132
HindII GTYRAC 2 cut(s) 769, 1132
HindIII AAGCTT 1 cut(s) 346
HinfI GANTC 8 cut(s) 161, 173, 227, 288, 607, 676, 878, 1408
HpaI GTTAAC 1 cut(s) 769
HpaII CCGG 5 cut(s) 362, 563, 587, 598, 1002
HphI GGTGA 6 cut(s) 140, 283, 440, 656, 964, 1375
Hpy166II GTNNAC 4 cut(s) 148, 769, 861, 1132
Hpy188I TCNGA 7 cut(s) 224, 475, 502, 681, 828, 1096, 1224
Hpy188III TCNNGA 6 cut(s) 167, 310, 487, 779, 904, 1062
Hpy8I GTNNAC 4 cut(s) 148, 769, 861, 1132
Hpy99I CGWCG 1 cut(s) 173
HpyCH4III ACNGT 3 cut(s) 244, 574, 1201
HpyCH4IV ACGT 1 cut(s) 1306
HpyCH4V TGCA 5 cut(s) 991, 1080, 1142, 1187, 1262
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 345, 1193, 1334
HpyF3I CTNAG 4 cut(s) 221, 501, 522, 1359
HpySE526I ACGT 1 cut(s) 1306
Hsp92I GRCGYC 1 cut(s) 560
Hsp92II CATG 3 cut(s) 261, 947, 1256
HspAI GCGC 4 cut(s) 268, 560, 622, 1356
KasI GGCGCC 1 cut(s) 559
KspAI GTTAAC 1 cut(s) 769
Kzo9I GATC 5 cut(s) 1006, 1018, 1224, 1311, 1433
LmnI GCTCC 2 cut(s) 466, 1256
Lsp1109I GCAGC 4 cut(s) 651, 832, 1246, 1337
MaeI CTAG 1 cut(s) 1274
MaeII ACGT 1 cut(s) 1306
MaeIII GTNAC 3 cut(s) 644, 654, 1268
MalI GATC 5 cut(s) 1008, 1020, 1226, 1313, 1435
MboI GATC 5 cut(s) 1006, 1018, 1224, 1311, 1433
MflI RGATCY 2 cut(s) 1018, 1433
MhlI GDGCHC 2 cut(s) 282, 1339
MluCI AATT 8 cut(s) 412, 421, 431, 517, 552, 1263, 1413, 1421
Mly113I GGCGCC 1 cut(s) 560
MlyI GAGTC 5 cut(s) 167, 170, 221, 616, 1417
MmeI TCCRAC 4 cut(s) 121, 377, 772, 1407
MseI TTAA 5 cut(s) 546, 768, 1209, 1319, 1416
MslI CAYNNNNRTG 1 cut(s) 819
MspA1I CMGCKG 1 cut(s) 127
MspI CCGG 5 cut(s) 362, 563, 587, 598, 1002
MspR9I CCNGG 5 cut(s) 26, 599, 875, 1003, 1301
Mva1269I GAATGC 1 cut(s) 814
MvaI CCWGG 3 cut(s) 26, 875, 1301
MvnI CGCG 1 cut(s) 268
MwoI GCNNNNNNNGC 4 cut(s) 11, 345, 1193, 1334
NarI GGCGCC 1 cut(s) 560
NciI CCSGG 2 cut(s) 599, 1003
NcoI CCATGG 2 cut(s) 257, 1252
NdeI CATATG 1 cut(s) 892
NdeII GATC 5 cut(s) 1006, 1018, 1224, 1311, 1433
NlaIII CATG 3 cut(s) 261, 947, 1256
NlaIV GGNNCC 4 cut(s) 561, 596, 960, 1435
NmeAIII GCCGAG 1 cut(s) 184
NmuCI GTSAC 3 cut(s) 644, 654, 1268
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PctI GAATGC 1 cut(s) 814
PfeI GAWTC 3 cut(s) 288, 676, 878
PkrI GCNGC 5 cut(s) 7, 666, 847, 1261, 1327
PleI GAGTC 5 cut(s) 167, 169, 221, 615, 1416
PluTI GGCGCC 1 cut(s) 563
PmaCI CACGTG 1 cut(s) 1307
PmlI CACGTG 1 cut(s) 1307
PpsI GAGTC 5 cut(s) 167, 169, 221, 615, 1416
Ppu21I YACGTR 1 cut(s) 1307
PpuMI RGGWCCY 1 cut(s) 959
PshBI ATTAAT 1 cut(s) 546
Psp5II RGGWCCY 1 cut(s) 959
Psp6I CCWGG 3 cut(s) 24, 873, 1299
PspCI CACGTG 1 cut(s) 1307
PspFI CCCAGC 1 cut(s) 1284
PspGI CCWGG 3 cut(s) 24, 873, 1299
PspN4I GGNNCC 4 cut(s) 561, 596, 960, 1435
PspPI GGNCC 2 cut(s) 540, 959
PspPPI RGGWCCY 1 cut(s) 959
PstNI CAGNNNCTG 1 cut(s) 955
PsuI RGATCY 2 cut(s) 1018, 1433
PvuII CAGCTG 1 cut(s) 127
RsaI GTAC 1 cut(s) 889
RsaNI GTAC 1 cut(s) 888
RseI CAYNNNNRTG 1 cut(s) 819
SaqAI TTAA 5 cut(s) 546, 768, 1209, 1319, 1416
SatI GCNGC 5 cut(s) 6, 665, 846, 1260, 1326
Sau3AI GATC 5 cut(s) 1006, 1018, 1224, 1311, 1433
Sau96I GGNCC 2 cut(s) 540, 959
SchI GAGTC 5 cut(s) 167, 170, 221, 616, 1417
ScrFI CCNGG 5 cut(s) 26, 599, 875, 1003, 1301
SduI GDGCHC 2 cut(s) 282, 1339
SfoI GGCGCC 1 cut(s) 561
SinI GGWCC 2 cut(s) 540, 959
SmiMI CAYNNNNRTG 1 cut(s) 819
Sse9I AATT 8 cut(s) 412, 421, 431, 517, 552, 1263, 1413, 1421
SspDI GGCGCC 1 cut(s) 559
SspMI CTAG 1 cut(s) 1274
StyD4I CCNGG 5 cut(s) 24, 597, 873, 1001, 1299
StyI CCWWGG 3 cut(s) 257, 1252, 1385
TaaI ACNGT 3 cut(s) 244, 574, 1201
TaiI ACGT 1 cut(s) 1309
TaqI TCGA 5 cut(s) 168, 286, 396, 674, 903
TasI AATT 8 cut(s) 412, 421, 431, 517, 552, 1263, 1413, 1421
TatI WGTACW 1 cut(s) 887
TfiI GAWTC 3 cut(s) 288, 676, 878
Tru1I TTAA 5 cut(s) 546, 768, 1209, 1319, 1416
Tru9I TTAA 5 cut(s) 546, 768, 1209, 1319, 1416
TscAI CASTG 1 cut(s) 919
TseFI GTSAC 3 cut(s) 644, 654, 1268
TseI GCWGC 5 cut(s) 5, 664, 845, 1259, 1325
Tsp45I GTSAC 3 cut(s) 644, 654, 1268
TspDTI ATGAA 3 cut(s) 295, 651, 1061
TspGWI ACGGA 1 cut(s) 223
TspRI CASTG 1 cut(s) 919
VpaK11BI GGWCC 2 cut(s) 540, 959
VspI ATTAAT 1 cut(s) 546
XapI RAATTY 2 cut(s) 412, 421
XspI CTAG 1 cut(s) 1274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.