FvH4_6g31710

Protein ABCI7, chloroplastic-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
24808305 .. 24814676
6372 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g31710.t6

Sequence Viewer

Length: 1437 bp
ATGGCTGCCATAGCATTTACACCCCAGGTTCAACGACCTCCCTTGCCCTTATTTTCCGCACCCAAATACCCAAAACCCAAAACCAGAGCCCCCCTCCAACCTCCTTCTTCCTCTTCTTCAACTTTACAGCTCGCCTATGACCCCTTCGTTCACCAACTCGCCGAGTCCCTCGACGACTCACTCCCCTCCTCCTCTTCTTCAGCTCTCCAAAACCTCCGAGACTCTTCTGTTCAAACCGTCCTCTCAACGCCATGGCCCACTCGCAAAGATGAGCCTTATCGCTTCACAGACACCTCCTTCATCAAAAGCTCTCAAATCACTCCAATATCTCGCCCACCCAGCTTTCCAACCGCACCGGAAGATACCAAGTTTCCCCATTTGGATATTGTCGATGGGTTCCTTGTGAATTCAATAAATTTGAGCGAATTGCCGAGTGGGGTTTATGTTGGTAGCTTGATGGAGCTTTCAGACGAAACAATCATGAAAAGGGTGTCTGAGTTTCTGTCCAGTAGCTCTCAGGGAGACTTGTTTTGGTCCATTAATGGAATTGGGGCGCCGGATTTGACTGTGGTTTATGTTCCAGCAGGGTGCCAGGTAGAGAATCCTATATGCTTGCGCTACTTTTCCAATGAAGGAGGTGAAATTAGGTCACATAAACTGCCATTATCGAATCCAAGGGTGCTTGTGTTGGTGGAAGCGGGAGGGGAAATTGGTTTGATTGAGGAGTTCCTAGGTGGTGATGGGGACAAGTGTTATTGGGTTAACTCTGTTTTGGAGGTTGGGGTTGGAGAAGGAGGGAAAGTTAAGCATTCTTATGTTCAGAACCAGTCTGTAAATGCTGCCCACATCAAGTGGACTTCTGTTCGCCAGGAATCTGCTAGTACGTATGAGCTTGTCGAAGTTAGCACTGGCGGAAAGTTGAGCAGACACAATCTCCATGTTCAACAACTAGGACCTGACACAATCACCGAGTTATCAACACTGCACTTGTCTGCTGGTAATCAAACCCAAGATCTACATAGTAGCATAGTCCTGGATCATCCACGAGGTTATTCCAGGCAACTACATAAATGCATTGTGTCTCACTCTGAAGGAAAAGCTGTATTTGATGGGAACGTAAAGGTTAACAGATACGCACAACAGACAGATGGTGGGCAACTAACAAGAAGTCTTCTTCTTGCACCCCGTGCCACTGTAAATGTTAAACCAAATCTTCAGATTATTGCTGACGATGTGAAATGTTCCCATGGAGCTGCAATTAGTGACCTAGAAGAAACCCAGCTCTTCTATTTTCTGGCACGGGGGATCAGTTTAGAGGCAGCAAGAAAGGCTCTTGTATATTCCTTTGGTGCTGAGGTGATTGAAGGATTACCTTATGCTTGGATAAAGAAAAAAGTAGAAAATCAAATTAAAGAATTGTTGGAAGGATCCTCATAA

Protein Analysis

479

Amino Acids

52.18

Weight (kDa)

5.84

Isoelectric Point (pI)

41.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SufBD_N PF19295 56 - 203 1.7e-09 SufBD protein N-terminal region
SUFBD_core PF01458 222 - 449 2.7e-66 SUF system FeS cluster assembly, SufBD core domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 553, 588
AciI CCGC 4 cut(s) 57, 351, 698, 912
AclWI GGATC 4 cut(s) 1044, 1313, 1422, 1435
AcsI RAATTY 2 cut(s) 406, 415
AcuI CTGAAG 3 cut(s) 183, 1110, 1199
AcyI GRCGYC 1 cut(s) 554
AdeI CACNNNGTG 1 cut(s) 1187
AfaI GTAC 1 cut(s) 883
AgsI TTSAA 6 cut(s) 32, 120, 233, 411, 944, 1364
AjnI CCWGG 5 cut(s) 24, 591, 867, 1032, 1055
Alw26I GTCTC 3 cut(s) 213, 516, 1086
AlwI GGATC 4 cut(s) 1044, 1313, 1422, 1435
AoxI GGCC 1 cut(s) 254
ApeKI GCWGC 4 cut(s) 5, 839, 1253, 1319
ApoI RAATTY 2 cut(s) 406, 415
AseI ATTAAT 1 cut(s) 540
AspA2I CCTAGG 1 cut(s) 730
AspLEI GCGC 2 cut(s) 556, 618
AspS9I GGNCC 3 cut(s) 255, 534, 953
AsuHPI GGTGA 5 cut(s) 143, 650, 749, 958, 1369
AvaII GGWCC 2 cut(s) 534, 953
AvrII CCTAGG 1 cut(s) 730
BamHI GGATCC 1 cut(s) 1427
BanI GGYRCC 2 cut(s) 553, 588
BanII GRGCYC 1 cut(s) 91
BauI CACGAG 1 cut(s) 1044
BbsI GAAGAC 1 cut(s) 1163
BbvCI CCTCAGC 1 cut(s) 1353
BbvI GCAGC 3 cut(s) 826, 1240, 1331
BccI CCATC 5 cut(s) 386, 451, 734, 1103, 1142
BciT130I CCWGG 5 cut(s) 26, 593, 869, 1034, 1057
BcoDI GTCTC 3 cut(s) 213, 516, 1086
BfaI CTAG 4 cut(s) 731, 879, 950, 1268
BfoI RGCGCY 1 cut(s) 557
BglII AGATCT 1 cut(s) 1012
BisI GCNGC 4 cut(s) 6, 840, 1254, 1320
BlnI CCTAGG 1 cut(s) 730
BlsI GCNGC 4 cut(s) 7, 841, 1255, 1321
Bme1390I CCNGG 5 cut(s) 26, 593, 869, 1034, 1057
Bme18I GGWCC 2 cut(s) 534, 953
BmgT120I GGNCC 3 cut(s) 255, 534, 953
BmiI GGNNCC 4 cut(s) 398, 555, 590, 1429
BmrFI CCNGG 5 cut(s) 26, 593, 869, 1034, 1057
BpiI GAAGAC 1 cut(s) 1163
BplI GAGNNNNNCTC 2 cut(s) 78, 110
Bpu10I CCTNAGC 1 cut(s) 1353
BsaAI YACGTR 1 cut(s) 885
BsaHI GRCGYC 1 cut(s) 554
BsaJI CCNNGG 5 cut(s) 24, 251, 674, 730, 1246
BsaWI WCCGGW 1 cut(s) 355
BsaXI ACNNNNNCTCC 4 cut(s) 786, 816, 918, 948
Bse1I ACTGG 3 cut(s) 507, 826, 913
BseBI CCWGG 5 cut(s) 26, 593, 869, 1034, 1057
BseDI CCNNGG 5 cut(s) 24, 251, 674, 730, 1246
BseGI GGATG 1 cut(s) 1039
BseMII CTCAG 3 cut(s) 486, 530, 1344
BseNI ACTGG 3 cut(s) 507, 826, 913
BseRI GAGGAG 3 cut(s) 178, 181, 737
BseXI GCAGC 3 cut(s) 826, 1240, 1331
BseYI CCCAGC 2 cut(s) 338, 1278
BsgI GTGCAG 1 cut(s) 968
BshFI GGCC 1 cut(s) 256
BshNI GGYRCC 2 cut(s) 553, 588
BsiSI CCGG 2 cut(s) 356, 557
BslFI GGGAC 2 cut(s) 151, 758
BsmAI GTCTC 3 cut(s) 213, 516, 1086
BsmFI GGGAC 2 cut(s) 151, 758
BsmI GAATGC 1 cut(s) 808
BsnI GGCC 1 cut(s) 256
Bsp1286I GDGCHC 1 cut(s) 91
Bsp143I GATC 4 cut(s) 1012, 1036, 1305, 1427
Bsp19I CCATGG 2 cut(s) 251, 1246
BspACI CCGC 4 cut(s) 57, 351, 698, 912
BspANI GGCC 1 cut(s) 256
BspCNI CTCAG 3 cut(s) 487, 529, 1345
BspHI TCATGA 1 cut(s) 480
BspLI GGNNCC 4 cut(s) 398, 555, 590, 1429
BspPI GGATC 4 cut(s) 1044, 1313, 1422, 1435
BspQI GCTCTTC 1 cut(s) 1289
BspT107I GGYRCC 2 cut(s) 553, 588
BsrI ACTGG 3 cut(s) 507, 826, 913
BssECI CCNNGG 5 cut(s) 24, 251, 674, 730, 1246
BssMI GATC 4 cut(s) 1012, 1036, 1305, 1427
BssNI GRCGYC 1 cut(s) 554
BssSI CACGAG 1 cut(s) 1044
BssT1I CCWWGG 4 cut(s) 251, 674, 730, 1246
Bst2BI CACGAG 1 cut(s) 1044
Bst2UI CCWGG 5 cut(s) 26, 593, 869, 1034, 1057
Bst4CI ACNGT 3 cut(s) 238, 568, 1195
Bst6I CTCTTC 4 cut(s) 118, 199, 229, 1289
BstACI GRCGYC 1 cut(s) 554
BstAPI GCANNNNNTGC 1 cut(s) 1187
BstBAI YACGTR 1 cut(s) 885
BstC8I GCNNGC 2 cut(s) 132, 614
BstDEI CTNAG 3 cut(s) 495, 516, 1353
BstDSI CCRYGG 2 cut(s) 251, 1246
BstF5I GGATG 1 cut(s) 1039
BstH2I RGCGCY 1 cut(s) 557
BstHHI GCGC 2 cut(s) 556, 618
BstKTI GATC 4 cut(s) 1015, 1039, 1308, 1430
BstMAI GTCTC 3 cut(s) 213, 516, 1086
BstMBI GATC 4 cut(s) 1012, 1036, 1305, 1427
BstMWI GCNNNNNNNGC 4 cut(s) 11, 339, 1187, 1328
BstNI CCWGG 5 cut(s) 26, 593, 869, 1034, 1057
BstSCI CCNGG 5 cut(s) 24, 591, 867, 1032, 1055
BstSNI TACGTA 1 cut(s) 885
BstV1I GCAGC 3 cut(s) 826, 1240, 1331
BstV2I GAAGAC 1 cut(s) 1163
BstX2I RGATCY 2 cut(s) 1012, 1427
BstYI RGATCY 2 cut(s) 1012, 1427
BsuRI GGCC 1 cut(s) 256
BtgI CCRYGG 2 cut(s) 251, 1246
BtsCI GGATG 1 cut(s) 1039
BtsI GCAGTG 1 cut(s) 980
BtsIMutI CAGTG 3 cut(s) 906, 980, 1191
Cac8I GCNNGC 2 cut(s) 132, 614
CciI TCATGA 1 cut(s) 480
CfoI GCGC 2 cut(s) 556, 618
Cfr13I GGNCC 3 cut(s) 255, 534, 953
Csp6I GTAC 1 cut(s) 882
CviAII CATG 4 cut(s) 252, 481, 938, 1247
CviQI GTAC 1 cut(s) 882
DdeI CTNAG 3 cut(s) 495, 516, 1353
DinI GGCGCC 1 cut(s) 555
DpnI GATC 4 cut(s) 1014, 1038, 1307, 1429
DpnII GATC 4 cut(s) 1012, 1036, 1305, 1427
DraIII CACNNNGTG 1 cut(s) 1187
Eam1104I CTCTTC 4 cut(s) 118, 199, 229, 1289
EarI CTCTTC 4 cut(s) 118, 199, 229, 1289
EciI GGCGGA 1 cut(s) 927
Eco105I TACGTA 1 cut(s) 885
Eco130I CCWWGG 4 cut(s) 251, 674, 730, 1246
Eco24I GRGCYC 1 cut(s) 91
Eco47I GGWCC 2 cut(s) 534, 953
Eco57I CTGAAG 3 cut(s) 183, 1110, 1199
EcoO109I RGGNCCY 1 cut(s) 953
EcoRI GAATTC 1 cut(s) 406
EcoRII CCWGG 5 cut(s) 24, 591, 867, 1032, 1055
EcoT14I CCWWGG 4 cut(s) 251, 674, 730, 1246
EcoT22I ATGCAT 1 cut(s) 1076
EcoT38I GRGCYC 1 cut(s) 91
EgeI GGCGCC 1 cut(s) 555
EheI GGCGCC 1 cut(s) 555
ErhI CCWWGG 4 cut(s) 251, 674, 730, 1246
FaeI CATG 4 cut(s) 255, 484, 941, 1250
FaqI GGGAC 2 cut(s) 151, 758
FatI CATG 4 cut(s) 251, 480, 937, 1246
FauI CCCGC 1 cut(s) 691
Fnu4HI GCNGC 4 cut(s) 6, 840, 1254, 1320
FokI GGATG 1 cut(s) 1026
FriOI GRGCYC 1 cut(s) 91
Fsp4HI GCNGC 4 cut(s) 6, 840, 1254, 1320
FspBI CTAG 4 cut(s) 731, 879, 950, 1268
GlaI GCGC 2 cut(s) 555, 617
GluI GCNGC 4 cut(s) 6, 840, 1254, 1320
GsaI CCCAGC 2 cut(s) 342, 1282
HaeII RGCGCY 1 cut(s) 557
HaeIII GGCC 1 cut(s) 256
HapII CCGG 2 cut(s) 356, 557
HhaI GCGC 2 cut(s) 556, 618
Hin1I GRCGYC 1 cut(s) 554
Hin1II CATG 4 cut(s) 255, 484, 941, 1250
Hin6I GCGC 2 cut(s) 554, 616
HinP1I GCGC 2 cut(s) 554, 616
HincII GTYRAC 2 cut(s) 763, 1126
HindII GTYRAC 2 cut(s) 763, 1126
HinfI GANTC 6 cut(s) 164, 176, 221, 601, 670, 872
HpaI GTTAAC 2 cut(s) 763, 1126
HpaII CCGG 2 cut(s) 356, 557
HphI GGTGA 5 cut(s) 143, 650, 749, 958, 1369
Hpy166II GTNNAC 4 cut(s) 151, 763, 855, 1126
Hpy188I TCNGA 6 cut(s) 218, 469, 496, 822, 1090, 1218
Hpy188III TCNNGA 1 cut(s) 481
Hpy8I GTNNAC 4 cut(s) 151, 763, 855, 1126
Hpy99I CGWCG 1 cut(s) 176
HpyAV CCTTC 8 cut(s) 114, 154, 307, 626, 785, 1085, 1358, 1418
HpyCH4III ACNGT 3 cut(s) 238, 568, 1195
HpyCH4IV ACGT 2 cut(s) 884, 1116
HpyCH4V TGCA 4 cut(s) 985, 1074, 1181, 1256
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 339, 1187, 1328
HpyF3I CTNAG 3 cut(s) 495, 516, 1353
HpySE526I ACGT 2 cut(s) 884, 1116
Hsp92I GRCGYC 1 cut(s) 554
Hsp92II CATG 4 cut(s) 255, 484, 941, 1250
HspAI GCGC 2 cut(s) 554, 616
KasI GGCGCC 1 cut(s) 553
KspAI GTTAAC 2 cut(s) 763, 1126
Kzo9I GATC 4 cut(s) 1012, 1036, 1305, 1427
LguI GCTCTTC 1 cut(s) 1289
LmnI GCTCC 2 cut(s) 460, 1250
Lsp1109I GCAGC 3 cut(s) 826, 1240, 1331
MaeI CTAG 4 cut(s) 731, 879, 950, 1268
MaeII ACGT 2 cut(s) 884, 1116
MaeIII GTNAC 2 cut(s) 648, 1262
MalI GATC 4 cut(s) 1014, 1038, 1307, 1429
MboI GATC 4 cut(s) 1012, 1036, 1305, 1427
MflI RGATCY 2 cut(s) 1012, 1427
MhlI GDGCHC 1 cut(s) 91
MluCI AATT 9 cut(s) 406, 415, 425, 546, 642, 708, 1257, 1407, 1415
Mly113I GGCGCC 1 cut(s) 554
MlyI GAGTC 3 cut(s) 170, 173, 215
MmeI TCCRAC 4 cut(s) 121, 371, 766, 1401
Mph1103I ATGCAT 1 cut(s) 1076
MseI TTAA 6 cut(s) 540, 762, 804, 1125, 1203, 1410
MslI CAYNNNNRTG 1 cut(s) 813
MspI CCGG 2 cut(s) 356, 557
MspR9I CCNGG 5 cut(s) 26, 593, 869, 1034, 1057
Mva1269I GAATGC 1 cut(s) 808
MvaI CCWGG 5 cut(s) 26, 593, 869, 1034, 1057
MwoI GCNNNNNNNGC 4 cut(s) 11, 339, 1187, 1328
NarI GGCGCC 1 cut(s) 554
NcoI CCATGG 2 cut(s) 251, 1246
NdeII GATC 4 cut(s) 1012, 1036, 1305, 1427
NlaIII CATG 4 cut(s) 255, 484, 941, 1250
NlaIV GGNNCC 4 cut(s) 398, 555, 590, 1429
NmeAIII GCCGAG 2 cut(s) 187, 456
NmuCI GTSAC 2 cut(s) 648, 1262
NsiI ATGCAT 1 cut(s) 1076
PagI TCATGA 1 cut(s) 480
PciSI GCTCTTC 1 cut(s) 1289
PctI GAATGC 1 cut(s) 808
PfeI GAWTC 3 cut(s) 601, 670, 872
PfoI TCCNGGA 1 cut(s) 1032
PkrI GCNGC 4 cut(s) 7, 841, 1255, 1321
PleI GAGTC 3 cut(s) 170, 172, 215
PluTI GGCGCC 1 cut(s) 557
PpsI GAGTC 3 cut(s) 170, 172, 215
Ppu21I YACGTR 1 cut(s) 885
PpuMI RGGWCCY 1 cut(s) 953
PshBI ATTAAT 1 cut(s) 540
Psp5II RGGWCCY 1 cut(s) 953
Psp6I CCWGG 5 cut(s) 24, 591, 867, 1032, 1055
PspFI CCCAGC 2 cut(s) 338, 1278
PspGI CCWGG 5 cut(s) 24, 591, 867, 1032, 1055
PspN4I GGNNCC 4 cut(s) 398, 555, 590, 1429
PspPI GGNCC 3 cut(s) 255, 534, 953
PspPPI RGGWCCY 1 cut(s) 953
PsuI RGATCY 2 cut(s) 1012, 1427
RsaI GTAC 1 cut(s) 883
RsaNI GTAC 1 cut(s) 882
RseI CAYNNNNRTG 1 cut(s) 813
SapI GCTCTTC 1 cut(s) 1289
SaqAI TTAA 6 cut(s) 540, 762, 804, 1125, 1203, 1410
SatI GCNGC 4 cut(s) 6, 840, 1254, 1320
Sau3AI GATC 4 cut(s) 1012, 1036, 1305, 1427
Sau96I GGNCC 3 cut(s) 255, 534, 953
SchI GAGTC 3 cut(s) 170, 173, 215
ScrFI CCNGG 5 cut(s) 26, 593, 869, 1034, 1057
SduI GDGCHC 1 cut(s) 91
SfoI GGCGCC 1 cut(s) 555
SinI GGWCC 2 cut(s) 534, 953
SmiMI CAYNNNNRTG 1 cut(s) 813
SnaBI TACGTA 1 cut(s) 885
Sse9I AATT 9 cut(s) 406, 415, 425, 546, 642, 708, 1257, 1407, 1415
SsiI CCGC 4 cut(s) 57, 351, 698, 912
SspDI GGCGCC 1 cut(s) 553
SspMI CTAG 4 cut(s) 731, 879, 950, 1268
StyD4I CCNGG 5 cut(s) 24, 591, 867, 1032, 1055
StyI CCWWGG 4 cut(s) 251, 674, 730, 1246
TaaI ACNGT 3 cut(s) 238, 568, 1195
TaiI ACGT 2 cut(s) 887, 1119
TaqI TCGA 4 cut(s) 171, 390, 668, 897
TasI AATT 9 cut(s) 406, 415, 425, 546, 642, 708, 1257, 1407, 1415
TfiI GAWTC 3 cut(s) 601, 670, 872
Tru1I TTAA 6 cut(s) 540, 762, 804, 1125, 1203, 1410
Tru9I TTAA 6 cut(s) 540, 762, 804, 1125, 1203, 1410
TscAI CASTG 3 cut(s) 913, 987, 1198
TseFI GTSAC 2 cut(s) 648, 1262
TseI GCWGC 4 cut(s) 5, 839, 1253, 1319
Tsp45I GTSAC 2 cut(s) 648, 1262
TspDTI ATGAA 3 cut(s) 289, 497, 645
TspRI CASTG 3 cut(s) 913, 987, 1198
VpaK11BI GGWCC 2 cut(s) 534, 953
VspI ATTAAT 1 cut(s) 540
XapI RAATTY 2 cut(s) 406, 415
XmaJI CCTAGG 1 cut(s) 730
XspI CTAG 4 cut(s) 731, 879, 950, 1268
Zsp2I ATGCAT 1 cut(s) 1076
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.