Rh6AG165200

Protein ABCI7, chloroplastic-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Forward (+)
26363598 .. 26367396
3799 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG165200.1

Sequence Viewer

Length: 1440 bp
ATGGCTGCCATAGCATTTACACCCCAGGTTCAAAGACCTCCCCTATCCTTATTTTCCACACCCAAAACCCCAAAACCTAAAACCAGAGTGTCTCTCCAACCTTCTTCTTCTTCAACTTCACAGCTGTCCTACGACCCCTTCGTTCACCAACTCGCGGAGTCTCTCGACGACTCACTCCCCTCCTCCTCCTCTTCTTCTTCCTCATCTCTCCAAAGCCTCAGAGACTCTTCCGTTCAAACCGTCCTCTCAACCCCATGGCCTACGCGCAAAGACGAGCCCTTTCGATTCACCGACACCTCCTTCATCAAGAACTCTCAAATCACGCCAATCTCTCGCCCACCAAGCCTTCCAACCACGCCGGACGACACCCAGTTCCCAAGTTTGGATATTGTCGATGGTTTCCTTGTGAATTTGTCAAATTTGGGTGAATTGCCCAATGGGGTTTATGTGGGTAGCTTGCTGGAGCTTTCGGACGAGACAATCCTGAAAAGGGTGTCTGAGTTTTTGTCCACTAGTTCTCAGGGAGACTTGTTTTGGTCCATTAATGGAATTGGGGCGCCGGATTTGACTGTGGTTTATGTTCCGGCAGGGTGCCGGGTAGAGAATCCTGTTTACTTGCGCTACATTGCCAATGAAGGAGGTGACATTGGGTCACATAAGCTGCCTTTATCGAATCCGAGGGTGCTTGTGTTGGTGGAGAAGGGAGGGGAGATTGGTGTGATTGAGGAGTTTTTGGGTGGGGATGGGGATAAGGCTTATTGGGTTAACTCTGTTTTGGAGGTTGTGGTTGGAGAAGGAGGGAAAGTTAGGCATTCTTATGTTCAGAACCAGTCTGTAAATGCTGCCCACATCAAGTGGACTTCGGTTCGCCAGGAATCAGCCAGTACATATGAGCTTGTCGAGATTAGCACTGGTGGAAGGTTGAGCAGGCACAATCTCCATGTTCAGCAACTGGGACCTGACACAATCACCGAGTTATCAACCCTGCACTTGTCTGCCGGGGATCAAACACAAGATCTACATAGTAGCATAGTCCTTGACCATCCACGAGGTTATTCCAGACAACTTCATAAGTGCATTGTGTCTCATTCTGAAGGAAAAGCCGTCTTTGATGGGAATGTAAAGGTCAACAGATATGCACAACAGACAGATGGTGGGCAACTAACAAGAAGTCTTCTTCTTGCACCCCGTGCCACCGTAAATGTTAAACCAAATCTTCAGATCATTGCTGATGATGTCAAGTGTTCCCATGGAGCTGCAATTAGTGACCTAGAAGAAACCCAGCTCTTTTATTTCCTGGCACGCGGGATCAGTTTAGAGGCAGCAAGAAGGGCTCTTGTCTATTCCTTTGGCGCTGAGGTGATTGAAGGATTACCTTATCCTTGGATAAAGACGAAGGTAGAAAGTCAAATTAAAGAATTGTTGGAAGGATCCTCATAA

Protein Analysis

479

Amino Acids

52.17

Weight (kDa)

5.59

Isoelectric Point (pI)

40.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SufBD_N PF19295 63 - 204 8.8e-07 SufBD protein N-terminal region
SUFBD_core PF01458 223 - 450 6.5e-68 SUF system FeS cluster assembly, SufBD core domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 556, 591
AccII CGCG 3 cut(s) 155, 265, 1305
AciI CCGC 2 cut(s) 155, 1305
AclWI GGATC 4 cut(s) 1011, 1316, 1425, 1438
AcsI RAATTY 2 cut(s) 409, 418
AcuI CTGAAG 2 cut(s) 1113, 1202
AcyI GRCGYC 1 cut(s) 557
AdeI CACNNNGTG 1 cut(s) 1190
AfaI GTAC 1 cut(s) 886
AfiI CCNNNNNNNGG 3 cut(s) 154, 382, 490
AgsI TTSAA 4 cut(s) 32, 114, 236, 1367
AhdI GACNNNNNGTC 1 cut(s) 649
AhlI ACTAGT 1 cut(s) 512
AjnI CCWGG 3 cut(s) 24, 870, 1296
AluBI AGCT 7 cut(s) 124, 456, 466, 661, 895, 1256, 1285
AluI AGCT 7 cut(s) 124, 456, 466, 661, 895, 1256, 1285
Alw26I GTCTC 6 cut(s) 96, 165, 216, 470, 519, 1089
AlwI GGATC 4 cut(s) 1011, 1316, 1425, 1438
AlwNI CAGNNNCTG 1 cut(s) 952
AoxI GGCC 1 cut(s) 257
ApeKI GCWGC 5 cut(s) 5, 661, 842, 1256, 1322
ApoI RAATTY 2 cut(s) 409, 418
AseI ATTAAT 1 cut(s) 543
AspLEI GCGC 4 cut(s) 267, 559, 621, 1355
AspS9I GGNCC 2 cut(s) 537, 956
AsuC2I CCSGG 2 cut(s) 596, 1000
AsuHPI GGTGA 6 cut(s) 137, 280, 437, 653, 961, 1372
AvaII GGWCC 2 cut(s) 537, 956
BamHI GGATCC 1 cut(s) 1430
BanI GGYRCC 2 cut(s) 556, 591
BanII GRGCYC 2 cut(s) 279, 1336
BauI CACGAG 1 cut(s) 1047
BbsI GAAGAC 1 cut(s) 1166
BbvCI CCTCAGC 1 cut(s) 1356
BbvI GCAGC 4 cut(s) 648, 829, 1243, 1334
BccI CCATC 5 cut(s) 389, 737, 1050, 1106, 1145
BceAI ACGGC 1 cut(s) 1088
BciT130I CCWGG 3 cut(s) 26, 872, 1298
BcnI CCSGG 2 cut(s) 596, 1000
BcoDI GTCTC 6 cut(s) 96, 165, 216, 470, 519, 1089
BcuI ACTAGT 1 cut(s) 512
BfaI CTAG 2 cut(s) 513, 1271
BfoI RGCGCY 2 cut(s) 560, 1356
BglII AGATCT 1 cut(s) 1015
BisI GCNGC 5 cut(s) 6, 662, 843, 1257, 1323
BlsI GCNGC 5 cut(s) 7, 663, 844, 1258, 1324
Bme1390I CCNGG 5 cut(s) 26, 596, 872, 1000, 1298
Bme18I GGWCC 2 cut(s) 537, 956
BmeRI GACNNNNNGTC 1 cut(s) 649
BmgT120I GGNCC 2 cut(s) 537, 956
BmiI GGNNCC 4 cut(s) 558, 593, 957, 1432
BmrFI CCNGG 5 cut(s) 26, 596, 872, 1000, 1298
BmrI ACTGGG 2 cut(s) 364, 962
BmuI ACTGGG 2 cut(s) 364, 962
BpiI GAAGAC 1 cut(s) 1166
BplI GAGNNNNNCTC 2 cut(s) 78, 110
BpmI CTGGAG 1 cut(s) 482
Bpu10I CCTNAGC 1 cut(s) 1356
BpuMI CCSGG 2 cut(s) 596, 1000
BsaHI GRCGYC 1 cut(s) 557
BsaJI CCNNGG 6 cut(s) 24, 254, 677, 999, 1249, 1382
BsaXI ACNNNNNCTCC 2 cut(s) 789, 819
Bsc4I CCNNNNNNNGG 3 cut(s) 154, 382, 490
Bse1I ACTGG 5 cut(s) 370, 829, 882, 916, 957
Bse3DI GCAATG 2 cut(s) 624, 1224
BseBI CCWGG 3 cut(s) 26, 872, 1298
BseDI CCNNGG 6 cut(s) 24, 254, 677, 999, 1249, 1382
BseGI GGATG 2 cut(s) 748, 1042
BseLI CCNNNNNNNGG 3 cut(s) 154, 382, 490
BseMI GCAATG 2 cut(s) 624, 1224
BseMII CTCAG 4 cut(s) 232, 489, 533, 1347
BseNI ACTGG 5 cut(s) 370, 829, 882, 916, 957
BseRI GAGGAG 4 cut(s) 172, 175, 178, 740
BseXI GCAGC 4 cut(s) 648, 829, 1243, 1334
BseYI CCCAGC 1 cut(s) 1281
BsgI GTGCAG 1 cut(s) 971
Bsh1236I CGCG 3 cut(s) 155, 265, 1305
BshFI GGCC 1 cut(s) 259
BshNI GGYRCC 2 cut(s) 556, 591
BsiSI CCGG 5 cut(s) 359, 560, 584, 595, 999
BslFI GGGAC 1 cut(s) 969
BslI CCNNNNNNNGG 3 cut(s) 154, 382, 490
BsmAI GTCTC 6 cut(s) 96, 165, 216, 470, 519, 1089
BsmFI GGGAC 1 cut(s) 969
BsmI GAATGC 1 cut(s) 811
BsnI GGCC 1 cut(s) 259
Bsp1286I GDGCHC 2 cut(s) 279, 1336
Bsp143I GATC 5 cut(s) 1003, 1015, 1221, 1308, 1430
Bsp19I CCATGG 2 cut(s) 254, 1249
BspACI CCGC 2 cut(s) 155, 1305
BspANI GGCC 1 cut(s) 259
BspCNI CTCAG 4 cut(s) 231, 490, 532, 1348
BspFNI CGCG 3 cut(s) 155, 265, 1305
BspLI GGNNCC 4 cut(s) 558, 593, 957, 1432
BspPI GGATC 4 cut(s) 1011, 1316, 1425, 1438
BspT107I GGYRCC 2 cut(s) 556, 591
BsrDI GCAATG 2 cut(s) 624, 1224
BsrI ACTGG 5 cut(s) 370, 829, 882, 916, 957
BssECI CCNNGG 6 cut(s) 24, 254, 677, 999, 1249, 1382
BssMI GATC 5 cut(s) 1003, 1015, 1221, 1308, 1430
BssNI GRCGYC 1 cut(s) 557
BssSI CACGAG 1 cut(s) 1047
BssT1I CCWWGG 3 cut(s) 254, 1249, 1382
Bst2BI CACGAG 1 cut(s) 1047
Bst2UI CCWGG 3 cut(s) 26, 872, 1298
Bst4CI ACNGT 3 cut(s) 241, 571, 1198
Bst6I CTCTTC 2 cut(s) 196, 232
BstACI GRCGYC 1 cut(s) 557
BstAPI GCANNNNNTGC 1 cut(s) 1190
BstC8I GCNNGC 3 cut(s) 458, 929, 1303
BstDEI CTNAG 4 cut(s) 218, 498, 519, 1356
BstDSI CCRYGG 2 cut(s) 254, 1249
BstF5I GGATG 2 cut(s) 748, 1042
BstFNI CGCG 3 cut(s) 155, 265, 1305
BstH2I RGCGCY 2 cut(s) 560, 1356
BstHHI GCGC 4 cut(s) 267, 559, 621, 1355
BstKTI GATC 5 cut(s) 1006, 1018, 1224, 1311, 1433
BstMAI GTCTC 6 cut(s) 96, 165, 216, 470, 519, 1089
BstMBI GATC 5 cut(s) 1003, 1015, 1221, 1308, 1430
BstMWI GCNNNNNNNGC 4 cut(s) 11, 342, 1190, 1331
BstNI CCWGG 3 cut(s) 26, 872, 1298
BstSCI CCNGG 5 cut(s) 24, 594, 870, 998, 1296
BstUI CGCG 3 cut(s) 155, 265, 1305
BstV1I GCAGC 4 cut(s) 648, 829, 1243, 1334
BstV2I GAAGAC 1 cut(s) 1166
BstX2I RGATCY 2 cut(s) 1015, 1430
BstYI RGATCY 2 cut(s) 1015, 1430
BsuRI GGCC 1 cut(s) 259
BtgI CCRYGG 2 cut(s) 254, 1249
BtsCI GGATG 2 cut(s) 748, 1042
BtsIMutI CAGTG 1 cut(s) 909
Cac8I GCNNGC 3 cut(s) 458, 929, 1303
CaiI CAGNNNCTG 1 cut(s) 952
CfoI GCGC 4 cut(s) 267, 559, 621, 1355
Cfr13I GGNCC 2 cut(s) 537, 956
Csp6I GTAC 1 cut(s) 885
CviAII CATG 3 cut(s) 255, 941, 1250
CviQI GTAC 1 cut(s) 885
DdeI CTNAG 4 cut(s) 218, 498, 519, 1356
DinI GGCGCC 1 cut(s) 558
DpnI GATC 5 cut(s) 1005, 1017, 1223, 1310, 1432
DpnII GATC 5 cut(s) 1003, 1015, 1221, 1308, 1430
DraIII CACNNNGTG 1 cut(s) 1190
DriI GACNNNNNGTC 1 cut(s) 649
Eam1104I CTCTTC 2 cut(s) 196, 232
Eam1105I GACNNNNNGTC 1 cut(s) 649
EarI CTCTTC 2 cut(s) 196, 232
Eco130I CCWWGG 3 cut(s) 254, 1249, 1382
Eco24I GRGCYC 2 cut(s) 279, 1336
Eco47I GGWCC 2 cut(s) 537, 956
Eco57I CTGAAG 2 cut(s) 1113, 1202
EcoO109I RGGNCCY 1 cut(s) 956
EcoRII CCWGG 3 cut(s) 24, 870, 1296
EcoT14I CCWWGG 3 cut(s) 254, 1249, 1382
EcoT38I GRGCYC 2 cut(s) 279, 1336
EgeI GGCGCC 1 cut(s) 558
EheI GGCGCC 1 cut(s) 558
ErhI CCWWGG 3 cut(s) 254, 1249, 1382
FaeI CATG 3 cut(s) 258, 944, 1253
FaqI GGGAC 1 cut(s) 969
FatI CATG 3 cut(s) 254, 940, 1249
FauI CCCGC 1 cut(s) 1298
FauNDI CATATG 1 cut(s) 889
Fnu4HI GCNGC 5 cut(s) 6, 662, 843, 1257, 1323
FokI GGATG 2 cut(s) 755, 1029
FriOI GRGCYC 2 cut(s) 279, 1336
Fsp4HI GCNGC 5 cut(s) 6, 662, 843, 1257, 1323
FspBI CTAG 2 cut(s) 513, 1271
GlaI GCGC 4 cut(s) 266, 558, 620, 1354
GluI GCNGC 5 cut(s) 6, 662, 843, 1257, 1323
GsaI CCCAGC 1 cut(s) 1285
GsuI CTGGAG 1 cut(s) 482
HaeII RGCGCY 2 cut(s) 560, 1356
HaeIII GGCC 1 cut(s) 259
HapII CCGG 5 cut(s) 359, 560, 584, 595, 999
HhaI GCGC 4 cut(s) 267, 559, 621, 1355
Hin1I GRCGYC 1 cut(s) 557
Hin1II CATG 3 cut(s) 258, 944, 1253
Hin6I GCGC 4 cut(s) 265, 557, 619, 1353
HinP1I GCGC 4 cut(s) 265, 557, 619, 1353
HincII GTYRAC 2 cut(s) 766, 1129
HindII GTYRAC 2 cut(s) 766, 1129
HinfI GANTC 7 cut(s) 158, 170, 224, 285, 604, 673, 875
HpaI GTTAAC 1 cut(s) 766
HpaII CCGG 5 cut(s) 359, 560, 584, 595, 999
HphI GGTGA 6 cut(s) 137, 280, 437, 653, 961, 1372
Hpy166II GTNNAC 6 cut(s) 145, 510, 613, 766, 858, 1129
Hpy188I TCNGA 7 cut(s) 221, 472, 499, 678, 825, 1093, 1221
Hpy188III TCNNGA 5 cut(s) 164, 307, 484, 901, 1059
Hpy8I GTNNAC 6 cut(s) 145, 510, 613, 766, 858, 1129
Hpy99I CGWCG 1 cut(s) 170
HpyCH4III ACNGT 3 cut(s) 241, 571, 1198
HpyCH4V TGCA 5 cut(s) 988, 1077, 1139, 1184, 1259
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 342, 1190, 1331
HpyF3I CTNAG 4 cut(s) 218, 498, 519, 1356
Hsp92I GRCGYC 1 cut(s) 557
Hsp92II CATG 3 cut(s) 258, 944, 1253
HspAI GCGC 4 cut(s) 265, 557, 619, 1353
KasI GGCGCC 1 cut(s) 556
KspAI GTTAAC 1 cut(s) 766
Kzo9I GATC 5 cut(s) 1003, 1015, 1221, 1308, 1430
LmnI GCTCC 2 cut(s) 463, 1253
Lsp1109I GCAGC 4 cut(s) 648, 829, 1243, 1334
MaeI CTAG 2 cut(s) 513, 1271
MaeIII GTNAC 3 cut(s) 641, 651, 1265
MalI GATC 5 cut(s) 1005, 1017, 1223, 1310, 1432
MboI GATC 5 cut(s) 1003, 1015, 1221, 1308, 1430
MflI RGATCY 2 cut(s) 1015, 1430
MhlI GDGCHC 2 cut(s) 279, 1336
MluCI AATT 7 cut(s) 409, 418, 428, 549, 1260, 1410, 1418
Mly113I GGCGCC 1 cut(s) 557
MlyI GAGTC 3 cut(s) 164, 167, 218
MmeI TCCRAC 4 cut(s) 121, 374, 769, 1404
MseI TTAA 4 cut(s) 543, 765, 1206, 1413
MslI CAYNNNNRTG 1 cut(s) 816
MspA1I CMGCKG 1 cut(s) 124
MspI CCGG 5 cut(s) 359, 560, 584, 595, 999
MspR9I CCNGG 5 cut(s) 26, 596, 872, 1000, 1298
Mva1269I GAATGC 1 cut(s) 811
MvaI CCWGG 3 cut(s) 26, 872, 1298
MvnI CGCG 3 cut(s) 155, 265, 1305
MwoI GCNNNNNNNGC 4 cut(s) 11, 342, 1190, 1331
NarI GGCGCC 1 cut(s) 557
NciI CCSGG 2 cut(s) 596, 1000
NcoI CCATGG 2 cut(s) 254, 1249
NdeI CATATG 1 cut(s) 889
NdeII GATC 5 cut(s) 1003, 1015, 1221, 1308, 1430
NlaIII CATG 3 cut(s) 258, 944, 1253
NlaIV GGNNCC 4 cut(s) 558, 593, 957, 1432
NmuCI GTSAC 3 cut(s) 641, 651, 1265
PcsI WCGNNNNNNNCGW 1 cut(s) 138
PctI GAATGC 1 cut(s) 811
PfeI GAWTC 4 cut(s) 285, 604, 673, 875
PkrI GCNGC 5 cut(s) 7, 663, 844, 1258, 1324
PleI GAGTC 3 cut(s) 164, 166, 218
PluTI GGCGCC 1 cut(s) 560
PpsI GAGTC 3 cut(s) 164, 166, 218
PpuMI RGGWCCY 1 cut(s) 956
PshBI ATTAAT 1 cut(s) 543
Psp5II RGGWCCY 1 cut(s) 956
Psp6I CCWGG 3 cut(s) 24, 870, 1296
PspFI CCCAGC 1 cut(s) 1281
PspGI CCWGG 3 cut(s) 24, 870, 1296
PspN4I GGNNCC 4 cut(s) 558, 593, 957, 1432
PspPI GGNCC 2 cut(s) 537, 956
PspPPI RGGWCCY 1 cut(s) 956
PstNI CAGNNNCTG 1 cut(s) 952
PsuI RGATCY 2 cut(s) 1015, 1430
PvuII CAGCTG 1 cut(s) 124
RsaI GTAC 1 cut(s) 886
RsaNI GTAC 1 cut(s) 885
RseI CAYNNNNRTG 1 cut(s) 816
SaqAI TTAA 4 cut(s) 543, 765, 1206, 1413
SatI GCNGC 5 cut(s) 6, 662, 843, 1257, 1323
Sau3AI GATC 5 cut(s) 1003, 1015, 1221, 1308, 1430
Sau96I GGNCC 2 cut(s) 537, 956
SchI GAGTC 3 cut(s) 164, 167, 218
ScrFI CCNGG 5 cut(s) 26, 596, 872, 1000, 1298
SduI GDGCHC 2 cut(s) 279, 1336
SfoI GGCGCC 1 cut(s) 558
SinI GGWCC 2 cut(s) 537, 956
SmiMI CAYNNNNRTG 1 cut(s) 816
SpeI ACTAGT 1 cut(s) 512
Sse9I AATT 7 cut(s) 409, 418, 428, 549, 1260, 1410, 1418
SsiI CCGC 2 cut(s) 155, 1305
SspDI GGCGCC 1 cut(s) 556
SspMI CTAG 2 cut(s) 513, 1271
StyD4I CCNGG 5 cut(s) 24, 594, 870, 998, 1296
StyI CCWWGG 3 cut(s) 254, 1249, 1382
TaaI ACNGT 3 cut(s) 241, 571, 1198
TaqI TCGA 5 cut(s) 165, 283, 393, 671, 900
TasI AATT 7 cut(s) 409, 418, 428, 549, 1260, 1410, 1418
TatI WGTACW 1 cut(s) 884
TfiI GAWTC 4 cut(s) 285, 604, 673, 875
Tru1I TTAA 4 cut(s) 543, 765, 1206, 1413
Tru9I TTAA 4 cut(s) 543, 765, 1206, 1413
TscAI CASTG 1 cut(s) 916
TseFI GTSAC 3 cut(s) 641, 651, 1265
TseI GCWGC 5 cut(s) 5, 661, 842, 1256, 1322
Tsp45I GTSAC 3 cut(s) 641, 651, 1265
TspDTI ATGAA 3 cut(s) 292, 648, 1058
TspGWI ACGGA 1 cut(s) 220
TspRI CASTG 1 cut(s) 916
VpaK11BI GGWCC 2 cut(s) 537, 956
VspI ATTAAT 1 cut(s) 543
XapI RAATTY 2 cut(s) 409, 418
XspI CTAG 2 cut(s) 513, 1271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.