AT1G32630

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0008718
Physical Location & Seq
Forward (+)
11797330 .. 11801359
4030 bp
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UTR
Exon/CDS
Intron
AT1G32630.1

Sequence Viewer

Length: 402 bp
ATGAGCAATGGTGGTTTGAGCATTGATGAGAAAGAAGGGTTGATAGACAAAGATGAAGTCATGATCCGTCGAATGAAGAACAGAGAAAGACAACGTAGGTATCGAGCCAGGAAACGGATGCGGGAAGAAGAAGCGGGTAACGATGATAATCTTTCGTTTGAGACAATGGGAAAACAAGAAGAAGAAGAAGAAGAAGACGAGGGACTAGAGTTTAATGGACCTAGTGGTTATGTTGAGAACTTTGTGCGGCGGGTTTATTGCGATAGAAATTGGAAAAAAGAAGCTAGAAGAGCTCATTTGATTATGAACAAGGCTCAAGATAGTTCTTGTGAGTCGGTTAAACGGAAGATAAGGCCGCATCGTCGAGATTGGAAAGCTGAAGCTAGAAAGAAGAAAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

16.01

Weight (kDa)

9.27

Isoelectric Point (pI)

67.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 121, 134, 247, 250, 356
AclWI GGATC 1 cut(s) 58
AcuI CTGAAG 1 cut(s) 399
AfiI CCNNNNNNNGG 1 cut(s) 114
AjnI CCWGG 1 cut(s) 107
AluBI AGCT 4 cut(s) 284, 293, 377, 383
AluI AGCT 4 cut(s) 284, 293, 377, 383
Alw21I GWGCWC 1 cut(s) 295
Alw26I GTCTC 1 cut(s) 155
AlwI GGATC 1 cut(s) 58
AoxI GGCC 1 cut(s) 353
ArsI GACNNNNNNTTYG 2 cut(s) 42, 74
AspS9I GGNCC 1 cut(s) 218
AvaII GGWCC 1 cut(s) 218
BaeI ACNNNNGTAYC 2 cut(s) 83, 116
BanII GRGCYC 1 cut(s) 295
BbsI GAAGAC 1 cut(s) 201
Bbv12I GWGCWC 1 cut(s) 295
BciT130I CCWGG 1 cut(s) 109
BcoDI GTCTC 1 cut(s) 155
BfaI CTAG 4 cut(s) 206, 222, 285, 384
BisI GCNGC 2 cut(s) 248, 356
BlsI GCNGC 2 cut(s) 249, 357
Bme1390I CCNGG 1 cut(s) 109
Bme18I GGWCC 1 cut(s) 218
BmgT120I GGNCC 1 cut(s) 218
BmrFI CCNGG 1 cut(s) 109
BmsI GCATC 2 cut(s) 108, 367
BpiI GAAGAC 1 cut(s) 201
BpuEI CTTGAG 1 cut(s) 300
BsaBI GATNNNNATC 1 cut(s) 147
Bsc4I CCNNNNNNNGG 1 cut(s) 114
Bse3DI GCAATG 1 cut(s) 13
Bse8I GATNNNNATC 1 cut(s) 147
BseBI CCWGG 1 cut(s) 109
BseGI GGATG 1 cut(s) 123
BseJI GATNNNNATC 1 cut(s) 147
BseLI CCNNNNNNNGG 1 cut(s) 114
BseMI GCAATG 1 cut(s) 13
BshFI GGCC 1 cut(s) 355
BsiHKAI GWGCWC 1 cut(s) 295
BslFI GGGAC 1 cut(s) 216
BslI CCNNNNNNNGG 1 cut(s) 114
BsmAI GTCTC 1 cut(s) 155
BsmFI GGGAC 1 cut(s) 216
BsnI GGCC 1 cut(s) 355
Bsp1286I GDGCHC 1 cut(s) 295
Bsp143I GATC 1 cut(s) 63
BspACI CCGC 5 cut(s) 121, 134, 247, 250, 356
BspANI GGCC 1 cut(s) 355
BspHI TCATGA 1 cut(s) 60
BspPI GGATC 1 cut(s) 58
BspQI GCTCTTC 1 cut(s) 283
BsrDI GCAATG 1 cut(s) 13
BssMI GATC 1 cut(s) 63
Bst2UI CCWGG 1 cut(s) 109
Bst6I CTCTTC 1 cut(s) 283
BstF5I GGATG 1 cut(s) 123
BstKTI GATC 1 cut(s) 66
BstMAI GTCTC 1 cut(s) 155
BstMBI GATC 1 cut(s) 63
BstMWI GCNNNNNNNGC 1 cut(s) 290
BstNI CCWGG 1 cut(s) 109
BstSCI CCNGG 1 cut(s) 107
BstV2I GAAGAC 1 cut(s) 201
BsuRI GGCC 1 cut(s) 355
BtsCI GGATG 1 cut(s) 123
CciI TCATGA 1 cut(s) 60
Cfr13I GGNCC 1 cut(s) 218
CviAII CATG 1 cut(s) 61
CviJI RGCY 7 cut(s) 107, 284, 293, 314, 355, 377, 383
CviKI_1 RGCY 7 cut(s) 107, 284, 293, 314, 355, 377, 383
DpnI GATC 1 cut(s) 65
DpnII GATC 1 cut(s) 63
Eam1104I CTCTTC 1 cut(s) 283
EarI CTCTTC 1 cut(s) 283
Ecl136II GAGCTC 1 cut(s) 293
Eco24I GRGCYC 1 cut(s) 295
Eco47I GGWCC 1 cut(s) 218
Eco53kI GAGCTC 1 cut(s) 293
Eco57I CTGAAG 1 cut(s) 399
EcoICRI GAGCTC 1 cut(s) 293
EcoRII CCWGG 1 cut(s) 107
EcoT38I GRGCYC 1 cut(s) 295
FaeI CATG 1 cut(s) 64
FaiI YATR 3 cut(s) 62, 231, 305
FaqI GGGAC 1 cut(s) 216
FatI CATG 1 cut(s) 60
FauI CCCGC 3 cut(s) 114, 127, 243
Fnu4HI GCNGC 2 cut(s) 248, 356
FokI GGATG 1 cut(s) 130
FriOI GRGCYC 1 cut(s) 295
Fsp4HI GCNGC 2 cut(s) 248, 356
FspBI CTAG 4 cut(s) 206, 222, 285, 384
GluI GCNGC 2 cut(s) 248, 356
HaeIII GGCC 1 cut(s) 355
Hin1II CATG 1 cut(s) 64
HinfI GANTC 1 cut(s) 332
Hpy188III TCNNGA 3 cut(s) 61, 317, 365
Hpy99I CGWCG 2 cut(s) 72, 366
HpyAV CCTTC 1 cut(s) 29
HpyCH4IV ACGT 1 cut(s) 94
HpyF10VI GCNNNNNNNGC 1 cut(s) 290
HpySE526I ACGT 1 cut(s) 94
Hsp92II CATG 1 cut(s) 64
Kzo9I GATC 1 cut(s) 63
LguI GCTCTTC 1 cut(s) 283
LpnPI CCDG 2 cut(s) 94, 121
LweI GCATC 2 cut(s) 108, 367
MaeI CTAG 4 cut(s) 206, 222, 285, 384
MaeII ACGT 1 cut(s) 94
MaeIII GTNAC 1 cut(s) 137
MalI GATC 1 cut(s) 65
MboI GATC 1 cut(s) 63
MhlI GDGCHC 1 cut(s) 295
MluCI AATT 1 cut(s) 268
MlyI GAGTC 1 cut(s) 341
MnlI CCTC 1 cut(s) 193
MseI TTAA 2 cut(s) 213, 339
MspR9I CCNGG 1 cut(s) 109
MvaI CCWGG 1 cut(s) 109
MwoI GCNNNNNNNGC 1 cut(s) 290
NdeII GATC 1 cut(s) 63
NlaIII CATG 1 cut(s) 64
PagI TCATGA 1 cut(s) 60
PciSI GCTCTTC 1 cut(s) 283
PcsI WCGNNNNNNNCGW 1 cut(s) 100
PkrI GCNGC 2 cut(s) 249, 357
PleI GAGTC 1 cut(s) 340
PpsI GAGTC 1 cut(s) 340
Psp124BI GAGCTC 1 cut(s) 295
Psp6I CCWGG 1 cut(s) 107
PspGI CCWGG 1 cut(s) 107
PspPI GGNCC 1 cut(s) 218
SacI GAGCTC 1 cut(s) 295
SapI GCTCTTC 1 cut(s) 283
SaqAI TTAA 2 cut(s) 213, 339
SatI GCNGC 2 cut(s) 248, 356
Sau3AI GATC 1 cut(s) 63
Sau96I GGNCC 1 cut(s) 218
SchI GAGTC 1 cut(s) 341
ScrFI CCNGG 1 cut(s) 109
SduI GDGCHC 1 cut(s) 295
SetI ASST 7 cut(s) 97, 101, 223, 286, 295, 379, 385
SfaNI GCATC 2 cut(s) 108, 367
SinI GGWCC 1 cut(s) 218
SmlI CTYRAG 1 cut(s) 315
SmoI CTYRAG 1 cut(s) 315
Sse9I AATT 1 cut(s) 268
SsiI CCGC 5 cut(s) 121, 134, 247, 250, 356
SspMI CTAG 4 cut(s) 206, 222, 285, 384
SstI GAGCTC 1 cut(s) 295
StyD4I CCNGG 1 cut(s) 107
TaiI ACGT 1 cut(s) 97
TaqI TCGA 3 cut(s) 70, 103, 364
TasI AATT 1 cut(s) 268
TauI GCSGC 2 cut(s) 250, 358
Tru1I TTAA 2 cut(s) 213, 339
Tru9I TTAA 2 cut(s) 213, 339
TspDTI ATGAA 3 cut(s) 69, 89, 320
TspGWI ACGGA 3 cut(s) 56, 130, 358
VpaK11BI GGWCC 1 cut(s) 218
XspI CTAG 4 cut(s) 206, 222, 285, 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.