Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0008718

Physical Location & Seq

Genomic Coordinates Reverse (-)

4148752 .. 4151768

Gene Structure 3017 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G036500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGAGCTGCCAACATTGGATTTAAAGGCAGGCAAAGATATGAATGCTGCTCAAACACAAGATAGTTTTATAATGAAGCCTATTGATCAAAGAGAGCGCACCAGAAGTCGTAATGATGTTCTGACTCGTCGCCTGAAGAACCGAGAACGACAACGTAGGTATAGGGCCCGGAAGCGCCTTGAAGCAGATATGAAGAAGCCTAGCATCATAAAGCAATCACCTCCACCACAAGTGGAAGTGCAAATGAATGGATTTGTTAGCAATTATGTACCCCGTGTGCACTGTAAACGAGATTGGAAAAAGGATGCAAGGAGGGCTCGTGTTTCTGAGTATCCTGAAGTTACACCTAATGGTTGTGCTGTCCTTACTCCTATGTCAACCAGTGAGAGTCAAACTGTGTTATTATCTGGAACTACGGCAGAGCCACTATTAGATAGTGAAACCCATTCCGAGATATCTGTGAACCAGAATAACTTTGAAATGCATAGACCCAAACTGTGTCGAAGAGATTGGAAAGCCGATGCAAGGAAGAAGAAAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

181

Amino Acids

20.99

Weight (kDa)

10.13

Isoelectric Point (pI)

53.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32630 AT1G32630
fragaria_vesca	FvH4_5g22080
malus_domestica	MD06G1034100.v1.1 MD06G1034200.v1.1
prunus_persica	Prupe.5G036500_v2.0.a1 Prupe.5G036500_v2.0.a1
pyrus_communis	pycom06g02820 pycom06g02830
rosa_chinensis	RchiOBHm_Chr7g0209731
rosa_laevigata	RLG00000003098
rosa_multiflora	Rmu_sc0002616.1_g000017
rosa_roxburghii	Rroxscaffold_3G00249120
rosa_rugosa	Rorug07G0115700 Rorug07G0115800 Rorug07G0115900 Rorug07G0116000 Rorug07G0116000
rosa_samantha	Rh7AG249400 Rh7BG243300 Rh7CG265400 Rh7DG255200
rosa_wichuraiana	Rw7G021140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	71
AcuI	CTGAAG	2 cut(s)	155, 357
AfaI	GTAC	1 cut(s)	270
AfiI	CCNNNNNNNGG	1 cut(s)	525
AgsI	TTSAA	2 cut(s)	182, 479
AluBI	AGCT	1 cut(s)	7
AluI	AGCT	1 cut(s)	7
Alw21I	GWGCWC	1 cut(s)	282
Alw44I	GTGCAC	1 cut(s)	278
AoxI	GGCC	1 cut(s)	165
ApaI	GGGCCC	1 cut(s)	169
ApaLI	GTGCAC	1 cut(s)	278
ApeKI	GCWGC	2 cut(s)	7, 47
AspLEI	GCGC	2 cut(s)	99, 177
AspS9I	GGNCC	2 cut(s)	165, 166
AsuC2I	CCSGG	1 cut(s)	169
AsuHPI	GGTGA	1 cut(s)	210
BaeGI	GKGCMC	2 cut(s)	169, 282
BanII	GRGCYC	2 cut(s)	169, 319
BauI	CACGAG	1 cut(s)	318
Bbv12I	GWGCWC	1 cut(s)	282
BbvI	GCAGC	1 cut(s)	34
BceAI	ACGGC	1 cut(s)	432
BciVI	GTATCC	1 cut(s)	342
BclI	TGATCA	1 cut(s)	85
BcnI	CCSGG	1 cut(s)	169
BfaI	CTAG	1 cut(s)	201
BfoI	RGCGCY	1 cut(s)	178
BfuI	GTATCC	1 cut(s)	342
BisI	GCNGC	2 cut(s)	8, 48
BlsI	GCNGC	2 cut(s)	9, 49
Bme1390I	CCNGG	1 cut(s)	169
BmgT120I	GGNCC	2 cut(s)	165, 166
BmiI	GGNNCC	1 cut(s)	167
BmrFI	CCNGG	1 cut(s)	169
BmsI	GCATC	3 cut(s)	213, 295, 511
BpuMI	CCSGG	1 cut(s)	169
BsaXI	ACNNNNNCTCC	2 cut(s)	304, 334
Bsc4I	CCNNNNNNNGG	1 cut(s)	525
Bse1I	ACTGG	1 cut(s)	381
BseGI	GGATG	1 cut(s)	310
BseLI	CCNNNNNNNGG	1 cut(s)	525
BseMII	CTCAG	1 cut(s)	318
BseNI	ACTGG	1 cut(s)	381
BseSI	GKGCMC	2 cut(s)	169, 282
BseXI	GCAGC	1 cut(s)	34
BshFI	GGCC	1 cut(s)	167
BsiHKAI	GWGCWC	1 cut(s)	282
BsiSI	CCGG	1 cut(s)	169
BslI	CCNNNNNNNGG	1 cut(s)	525
BsmI	GAATGC	1 cut(s)	49
BsnI	GGCC	1 cut(s)	167
Bsp120I	GGGCCC	1 cut(s)	165
Bsp1286I	GDGCHC	3 cut(s)	169, 282, 319
Bsp143I	GATC	1 cut(s)	85
BspANI	GGCC	1 cut(s)	167
BspCNI	CTCAG	1 cut(s)	319
BspLI	GGNNCC	1 cut(s)	167
BsrI	ACTGG	1 cut(s)	381
BssMI	GATC	1 cut(s)	85
BssSI	CACGAG	1 cut(s)	318
Bst2BI	CACGAG	1 cut(s)	318
Bst4CI	ACNGT	3 cut(s)	284, 397, 498
Bst6I	CTCTTC	1 cut(s)	499
BstC8I	GCNNGC	1 cut(s)	31
BstDEI	CTNAG	1 cut(s)	327
BstF5I	GGATG	1 cut(s)	310
BstH2I	RGCGCY	1 cut(s)	178
BstHHI	GCGC	2 cut(s)	99, 177
BstKTI	GATC	1 cut(s)	88
BstMBI	GATC	1 cut(s)	85
BstMWI	GCNNNNNNNGC	1 cut(s)	314
BstSCI	CCNGG	1 cut(s)	167
BstSLI	GKGCMC	2 cut(s)	169, 282
BstV1I	GCAGC	1 cut(s)	34
BsuI	GTATCC	1 cut(s)	342
BsuRI	GGCC	1 cut(s)	167
BtsCI	GGATG	1 cut(s)	310
BtsIMutI	CAGTG	2 cut(s)	280, 388
Cac8I	GCNNGC	1 cut(s)	31
CfoI	GCGC	2 cut(s)	99, 177
Cfr13I	GGNCC	2 cut(s)	165, 166
Csp6I	GTAC	1 cut(s)	269
CviJI	RGCY	7 cut(s)	7, 79, 167, 199, 317, 424, 518
CviKI_1	RGCY	7 cut(s)	7, 79, 167, 199, 317, 424, 518
CviQI	GTAC	1 cut(s)	269
DdeI	CTNAG	1 cut(s)	327
DpnI	GATC	1 cut(s)	87
DpnII	GATC	1 cut(s)	85
DraI	TTTAAA	1 cut(s)	24
Eam1104I	CTCTTC	1 cut(s)	499
EarI	CTCTTC	1 cut(s)	499
Eco24I	GRGCYC	2 cut(s)	169, 319
Eco32I	GATATC	1 cut(s)	456
Eco57I	CTGAAG	2 cut(s)	155, 357
EcoO109I	RGGNCCY	1 cut(s)	165
EcoRV	GATATC	1 cut(s)	456
EcoT22I	ATGCAT	1 cut(s)	486
EcoT38I	GRGCYC	2 cut(s)	169, 319
FaiI	YATR	8 cut(s)	41, 71, 162, 191, 209, 267, 374, 486
FbaI	TGATCA	1 cut(s)	85
Fnu4HI	GCNGC	2 cut(s)	8, 48
FokI	GGATG	1 cut(s)	317
FriOI	GRGCYC	2 cut(s)	169, 319
Fsp4HI	GCNGC	2 cut(s)	8, 48
FspBI	CTAG	1 cut(s)	201
GlaI	GCGC	2 cut(s)	98, 176
GluI	GCNGC	2 cut(s)	8, 48
HaeII	RGCGCY	1 cut(s)	178
HaeIII	GGCC	1 cut(s)	167
HapII	CCGG	1 cut(s)	169
HhaI	GCGC	2 cut(s)	99, 177
Hin6I	GCGC	2 cut(s)	97, 175
HinP1I	GCGC	2 cut(s)	97, 175
HincII	GTYRAC	1 cut(s)	378
HindII	GTYRAC	1 cut(s)	378
HinfI	GANTC	2 cut(s)	124, 388
HpaII	CCGG	1 cut(s)	169
HphI	GGTGA	1 cut(s)	210
Hpy166II	GTNNAC	4 cut(s)	280, 287, 378, 463
Hpy188I	TCNGA	3 cut(s)	123, 328, 451
Hpy188III	TCNNGA	2 cut(s)	335, 408
Hpy8I	GTNNAC	4 cut(s)	280, 287, 378, 463
Hpy99I	CGWCG	1 cut(s)	132
HpyCH4III	ACNGT	3 cut(s)	284, 397, 498
HpyCH4IV	ACGT	1 cut(s)	154
HpyCH4V	TGCA	5 cut(s)	241, 280, 308, 484, 524
HpyF10VI	GCNNNNNNNGC	1 cut(s)	314
HpyF3I	CTNAG	1 cut(s)	327
HpySE526I	ACGT	1 cut(s)	154
HspAI	GCGC	2 cut(s)	97, 175
Ksp22I	TGATCA	1 cut(s)	85
Kzo9I	GATC	1 cut(s)	85
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	8 cut(s)	15, 115, 146, 182, 348, 393, 394, 479
Lsp1109I	GCAGC	1 cut(s)	34
LweI	GCATC	3 cut(s)	213, 295, 511
MaeI	CTAG	1 cut(s)	201
MaeII	ACGT	1 cut(s)	154
MaeIII	GTNAC	1 cut(s)	340
MalI	GATC	1 cut(s)	87
MboI	GATC	1 cut(s)	85
MboII	GAAGA	4 cut(s)	148, 205, 516, 541
MhlI	GDGCHC	3 cut(s)	169, 282, 319
MluCI	AATT	1 cut(s)	262
MlyI	GAGTC	2 cut(s)	118, 397
MnlI	CCTC	2 cut(s)	231, 306
Mph1103I	ATGCAT	1 cut(s)	486
MseI	TTAA	1 cut(s)	23
MspI	CCGG	1 cut(s)	169
MspR9I	CCNGG	1 cut(s)	169
Mva1269I	GAATGC	1 cut(s)	49
MwoI	GCNNNNNNNGC	1 cut(s)	314
NciI	CCSGG	1 cut(s)	169
NdeII	GATC	1 cut(s)	85
NlaIV	GGNNCC	1 cut(s)	167
NsiI	ATGCAT	1 cut(s)	486
PctI	GAATGC	1 cut(s)	49
PkrI	GCNGC	2 cut(s)	9, 49
PleI	GAGTC	2 cut(s)	118, 396
PpsI	GAGTC	2 cut(s)	118, 396
PsiI	TTATAA	1 cut(s)	71
PspN4I	GGNNCC	1 cut(s)	167
PspOMI	GGGCCC	1 cut(s)	165
PspPI	GGNCC	2 cut(s)	165, 166
RsaI	GTAC	1 cut(s)	270
RsaNI	GTAC	1 cut(s)	269
SaqAI	TTAA	1 cut(s)	23
SatI	GCNGC	2 cut(s)	8, 48
Sau3AI	GATC	1 cut(s)	85
Sau96I	GGNCC	2 cut(s)	165, 166
SchI	GAGTC	2 cut(s)	118, 397
ScrFI	CCNGG	1 cut(s)	169
SduI	GDGCHC	3 cut(s)	169, 282, 319
SetI	ASST	5 cut(s)	9, 157, 161, 223, 349
SfaNI	GCATC	3 cut(s)	213, 295, 511
Sse9I	AATT	1 cut(s)	262
SspMI	CTAG	1 cut(s)	201
StyD4I	CCNGG	1 cut(s)	167
TaaI	ACNGT	3 cut(s)	284, 397, 498
TaiI	ACGT	1 cut(s)	157
TaqI	TCGA	1 cut(s)	502
TasI	AATT	1 cut(s)	262
Tru1I	TTAA	1 cut(s)	23
Tru9I	TTAA	1 cut(s)	23
TscAI	CASTG	2 cut(s)	287, 388
TseI	GCWGC	2 cut(s)	7, 47
TspDTI	ATGAA	4 cut(s)	56, 89, 206, 260
TspRI	CASTG	2 cut(s)	287, 388
VneI	GTGCAC	1 cut(s)	278
XspI	CTAG	1 cut(s)	201
Zsp2I	ATGCAT	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.