Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0008718

Physical Location & Seq

Genomic Coordinates Forward (+)

4245696 .. 4249079

Gene Structure 3384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1034100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGAAGCCTATTGATCAAAGAGAGCGCACCAGAAACCGTAATGATATTCAGACAAGTCGCATGAAGAACAGAGAACGACAACGTAGGTATAGGGCCCGTAAGCGTCTTGAAGCAGATTTGAAGAAGTCTAGCATCATAAAGCAACCAACTGCACCAGAAGTAGAAGTGCAACGAAATGAGTTCATTTACACACCCCGTGTGTACTGTAAACGAGATTGGAAAAAGGATGCAAGGAGTGCTCATGCTTTTAAGGCCCCTGAATTTACCCATAATGGTTATGCCATCCCTACTCTTACGTCAATCAGTGAGGGTCAAAGTGTGTTTTTGTCTGGAGCAGAGCTACAATTAGATAGTGAATCCCGGTCTGAGATAATTGTGAACCAGAATAACTGCGAAATGCATGTATCTAATTTTGGTCGAAGAGATTGGAAAGCCGATGCAAGAAAGAAGAAAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

153

Amino Acids

17.98

Weight (kDa)

10.18

Isoelectric Point (pI)

49.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32630 AT1G32630
fragaria_vesca	FvH4_5g22080
malus_domestica	MD06G1034100.v1.1 MD06G1034200.v1.1
prunus_persica	Prupe.5G036500_v2.0.a1 Prupe.5G036500_v2.0.a1
pyrus_communis	pycom06g02820 pycom06g02830
rosa_chinensis	RchiOBHm_Chr7g0209731
rosa_laevigata	RLG00000003098
rosa_multiflora	Rmu_sc0002616.1_g000017
rosa_roxburghii	Rroxscaffold_3G00249120
rosa_rugosa	Rorug07G0115700 Rorug07G0115800 Rorug07G0115900 Rorug07G0116000 Rorug07G0116000
rosa_samantha	Rh7AG249400 Rh7BG243300 Rh7CG265400 Rh7DG255200
rosa_wichuraiana	Rw7G021140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	260
AdeI	CACNNNGTG	1 cut(s)	197
AfaI	GTAC	1 cut(s)	203
AgsI	TTSAA	2 cut(s)	110, 121
AluBI	AGCT	1 cut(s)	340
AluI	AGCT	1 cut(s)	340
Alw21I	GWGCWC	1 cut(s)	241
AoxI	GGCC	2 cut(s)	93, 252
ApaI	GGGCCC	1 cut(s)	97
ApoI	RAATTY	1 cut(s)	260
AspLEI	GCGC	1 cut(s)	27
AspS9I	GGNCC	3 cut(s)	93, 94, 253
AsuC2I	CCSGG	1 cut(s)	361
BaeGI	GKGCMC	1 cut(s)	97
BanII	GRGCYC	1 cut(s)	97
Bbv12I	GWGCWC	1 cut(s)	241
BccI	CCATC	1 cut(s)	290
BclI	TGATCA	1 cut(s)	13
BcnI	CCSGG	1 cut(s)	361
BfaI	CTAG	1 cut(s)	129
Bme1390I	CCNGG	1 cut(s)	361
BmgT120I	GGNCC	3 cut(s)	93, 94, 253
BmiI	GGNNCC	2 cut(s)	95, 255
BmrFI	CCNGG	1 cut(s)	361
BmsI	GCATC	3 cut(s)	141, 217, 427
BpmI	CTGGAG	1 cut(s)	351
BpuMI	CCSGG	1 cut(s)	361
BseGI	GGATG	2 cut(s)	232, 282
BseMII	CTCAG	1 cut(s)	357
BseSI	GKGCMC	1 cut(s)	97
BsgI	GTGCAG	1 cut(s)	135
BshFI	GGCC	2 cut(s)	95, 254
BsiHKAI	GWGCWC	1 cut(s)	241
BsiSI	CCGG	1 cut(s)	361
BsnI	GGCC	2 cut(s)	95, 254
Bsp120I	GGGCCC	1 cut(s)	93
Bsp1286I	GDGCHC	2 cut(s)	97, 241
Bsp143I	GATC	1 cut(s)	13
BspANI	GGCC	2 cut(s)	95, 254
BspCNI	CTCAG	1 cut(s)	358
BspLI	GGNNCC	2 cut(s)	95, 255
BssMI	GATC	1 cut(s)	13
Bst4CI	ACNGT	2 cut(s)	38, 206
Bst6I	CTCTTC	1 cut(s)	415
BstAPI	GCANNNNNTGC	1 cut(s)	236
BstDEI	CTNAG	1 cut(s)	366
BstF5I	GGATG	2 cut(s)	232, 282
BstHHI	GCGC	1 cut(s)	27
BstKTI	GATC	1 cut(s)	16
BstMBI	GATC	1 cut(s)	13
BstMWI	GCNNNNNNNGC	2 cut(s)	236, 251
BstNSI	RCATGY	1 cut(s)	404
BstSCI	CCNGG	1 cut(s)	359
BstSLI	GKGCMC	1 cut(s)	97
BsuRI	GGCC	2 cut(s)	95, 254
BtsCI	GGATG	2 cut(s)	232, 282
BtsIMutI	CAGTG	1 cut(s)	310
CfoI	GCGC	1 cut(s)	27
Cfr13I	GGNCC	3 cut(s)	93, 94, 253
CseI	GACGC	1 cut(s)	92
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	3 cut(s)	61, 242, 401
CviJI	RGCY	5 cut(s)	7, 95, 254, 340, 434
CviKI_1	RGCY	5 cut(s)	7, 95, 254, 340, 434
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	1 cut(s)	366
DpnI	GATC	1 cut(s)	15
DpnII	GATC	1 cut(s)	13
DraIII	CACNNNGTG	1 cut(s)	197
Eam1104I	CTCTTC	1 cut(s)	415
EarI	CTCTTC	1 cut(s)	415
Eco24I	GRGCYC	1 cut(s)	97
EcoO109I	RGGNCCY	2 cut(s)	93, 253
EcoT22I	ATGCAT	1 cut(s)	402
EcoT38I	GRGCYC	1 cut(s)	97
FaeI	CATG	3 cut(s)	64, 245, 404
FaiI	YATR	7 cut(s)	62, 90, 137, 243, 270, 279, 402
FatI	CATG	3 cut(s)	60, 241, 400
FbaI	TGATCA	1 cut(s)	13
FokI	GGATG	2 cut(s)	239, 269
FriOI	GRGCYC	1 cut(s)	97
FspBI	CTAG	1 cut(s)	129
GlaI	GCGC	1 cut(s)	26
GsuI	CTGGAG	1 cut(s)	351
HaeIII	GGCC	2 cut(s)	95, 254
HapII	CCGG	1 cut(s)	361
HgaI	GACGC	1 cut(s)	92
HhaI	GCGC	1 cut(s)	27
Hin1II	CATG	3 cut(s)	64, 245, 404
Hin6I	GCGC	1 cut(s)	25
HinP1I	GCGC	1 cut(s)	25
HinfI	GANTC	1 cut(s)	356
HpaII	CCGG	1 cut(s)	361
Hpy166II	GTNNAC	3 cut(s)	202, 209, 379
Hpy188I	TCNGA	2 cut(s)	51, 367
Hpy188III	TCNNGA	2 cut(s)	107, 330
Hpy8I	GTNNAC	3 cut(s)	202, 209, 379
HpyCH4III	ACNGT	2 cut(s)	38, 206
HpyCH4IV	ACGT	2 cut(s)	82, 296
HpyCH4V	TGCA	5 cut(s)	152, 169, 230, 400, 440
HpyF10VI	GCNNNNNNNGC	2 cut(s)	236, 251
HpyF3I	CTNAG	1 cut(s)	366
HpySE526I	ACGT	2 cut(s)	82, 296
Hsp92II	CATG	3 cut(s)	64, 245, 404
HspAI	GCGC	1 cut(s)	25
Ksp22I	TGATCA	1 cut(s)	13
Kzo9I	GATC	1 cut(s)	13
LmnI	GCTCC	1 cut(s)	332
LpnPI	CCDG	6 cut(s)	43, 168, 270, 315, 374, 395
LweI	GCATC	3 cut(s)	141, 217, 427
MaeI	CTAG	1 cut(s)	129
MaeII	ACGT	2 cut(s)	82, 296
MalI	GATC	1 cut(s)	15
MboI	GATC	1 cut(s)	13
MboII	GAAGA	3 cut(s)	76, 133, 432
MhlI	GDGCHC	2 cut(s)	97, 241
MluCI	AATT	4 cut(s)	260, 344, 372, 409
MnlI	CCTC	1 cut(s)	301
Mph1103I	ATGCAT	1 cut(s)	402
MseI	TTAA	1 cut(s)	249
MspI	CCGG	1 cut(s)	361
MspR9I	CCNGG	1 cut(s)	361
MwoI	GCNNNNNNNGC	2 cut(s)	236, 251
NciI	CCSGG	1 cut(s)	361
NdeII	GATC	1 cut(s)	13
NlaIII	CATG	3 cut(s)	64, 245, 404
NlaIV	GGNNCC	2 cut(s)	95, 255
NsiI	ATGCAT	1 cut(s)	402
NspI	RCATGY	1 cut(s)	404
PfeI	GAWTC	1 cut(s)	356
PspN4I	GGNNCC	2 cut(s)	95, 255
PspOMI	GGGCCC	1 cut(s)	93
PspPI	GGNCC	3 cut(s)	93, 94, 253
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
SaqAI	TTAA	1 cut(s)	249
Sau3AI	GATC	1 cut(s)	13
Sau96I	GGNCC	3 cut(s)	93, 94, 253
ScrFI	CCNGG	1 cut(s)	361
SduI	GDGCHC	2 cut(s)	97, 241
SetI	ASST	4 cut(s)	85, 89, 299, 342
SfaNI	GCATC	3 cut(s)	141, 217, 427
Sse9I	AATT	4 cut(s)	260, 344, 372, 409
SspMI	CTAG	1 cut(s)	129
StyD4I	CCNGG	1 cut(s)	359
TaaI	ACNGT	2 cut(s)	38, 206
TaiI	ACGT	2 cut(s)	85, 299
TaqI	TCGA	1 cut(s)	418
TasI	AATT	4 cut(s)	260, 344, 372, 409
TatI	WGTACW	1 cut(s)	201
TfiI	GAWTC	1 cut(s)	356
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TscAI	CASTG	1 cut(s)	310
TspDTI	ATGAA	3 cut(s)	17, 77, 172
TspRI	CASTG	1 cut(s)	310
XapI	RAATTY	1 cut(s)	260
XceI	RCATGY	1 cut(s)	404
XspI	CTAG	1 cut(s)	129
Zsp2I	ATGCAT	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.