Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002616.1

Orthogroup ID

OG0008718

Physical Location & Seq

Genomic Coordinates Forward (+)

55846 .. 56316

Gene Structure 471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002616.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

atgaagcctattgatcaaagagagcgcaccaggggtcgtaatgacattctcactcgtcgcttgaaaaaccgagaaagacaacgtagatatagggcccggaagcgtcttgaagcagaattgaaaaattccagcattataaagccctcaacttcaccagatgtagaagtgcaatttaatgaaactgttagcaattacacaccccgtgtgcactgcaaacggaattggaaaaaggatgcaaggagagctcatgtttctaagaatcctgaagttacagctaatgcttatgctgcccctactttgatgtcaaccagtgtaagtcaaaccgtgttcatgtctggaactacagcagaaccaaaatttgagagtgaaacgtattcagaggtatctgttgaccaaaataactgtgaaatgaatagacctaaactggggagaagagattggaaagctgatgcaagaaagaagaaaaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

156

Amino Acids

18.26

Weight (kDa)

10.4

Isoelectric Point (pI)

43.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32630 AT1G32630
fragaria_vesca	FvH4_5g22080
malus_domestica	MD06G1034100.v1.1 MD06G1034200.v1.1
prunus_persica	Prupe.5G036500_v2.0.a1 Prupe.5G036500_v2.0.a1
pyrus_communis	pycom06g02820 pycom06g02830
rosa_chinensis	RchiOBHm_Chr7g0209731
rosa_laevigata	RLG00000003098
rosa_multiflora	Rmu_sc0002616.1_g000017
rosa_roxburghii	Rroxscaffold_3G00249120
rosa_rugosa	Rorug07G0115700 Rorug07G0115800 Rorug07G0115900 Rorug07G0116000 Rorug07G0116000
rosa_samantha	Rh7AG249400 Rh7BG243300 Rh7CG265400 Rh7DG255200
rosa_wichuraiana	Rw7G021140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	137
AcsI	RAATTY	2 cut(s)	124, 356
AcuI	CTGAAG	1 cut(s)	285
AdeI	CACNNNGTG	1 cut(s)	203
AfiI	CCNNNNNNNGG	1 cut(s)	425
AgsI	TTSAA	3 cut(s)	64, 110, 121
AjnI	CCWGG	1 cut(s)	29
AluBI	AGCT	3 cut(s)	245, 275, 446
AluI	AGCT	3 cut(s)	245, 275, 446
Alw21I	GWGCWC	2 cut(s)	210, 247
Alw44I	GTGCAC	1 cut(s)	206
AoxI	GGCC	1 cut(s)	93
ApaI	GGGCCC	1 cut(s)	97
ApaLI	GTGCAC	1 cut(s)	206
ApeKI	GCWGC	1 cut(s)	287
ApoI	RAATTY	2 cut(s)	124, 356
AspLEI	GCGC	1 cut(s)	27
AspS9I	GGNCC	2 cut(s)	93, 94
AsuC2I	CCSGG	1 cut(s)	97
AsuHPI	GGTGA	1 cut(s)	144
BaeGI	GKGCMC	2 cut(s)	97, 210
BanII	GRGCYC	2 cut(s)	97, 247
Bbv12I	GWGCWC	2 cut(s)	210, 247
BbvI	GCAGC	1 cut(s)	274
BciT130I	CCWGG	1 cut(s)	31
BclI	TGATCA	1 cut(s)	13
BcnI	CCSGG	1 cut(s)	97
BfmI	CTRYAG	1 cut(s)	342
BisI	GCNGC	1 cut(s)	288
BlsI	GCNGC	1 cut(s)	289
Bme1390I	CCNGG	2 cut(s)	31, 97
BmgT120I	GGNCC	2 cut(s)	93, 94
BmiI	GGNNCC	1 cut(s)	95
BmrFI	CCNGG	2 cut(s)	31, 97
BmrI	ACTGGG	1 cut(s)	434
BmsI	GCATC	2 cut(s)	223, 439
BmuI	ACTGGG	1 cut(s)	434
BpuMI	CCSGG	1 cut(s)	97
BsaJI	CCNNGG	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	1 cut(s)	425
Bse1I	ACTGG	2 cut(s)	309, 429
BseBI	CCWGG	1 cut(s)	31
BseDI	CCNNGG	1 cut(s)	30
BseGI	GGATG	1 cut(s)	238
BseLI	CCNNNNNNNGG	1 cut(s)	425
BseNI	ACTGG	2 cut(s)	309, 429
BseSI	GKGCMC	2 cut(s)	97, 210
BseXI	GCAGC	1 cut(s)	274
BshFI	GGCC	1 cut(s)	95
BsiHKAI	GWGCWC	2 cut(s)	210, 247
BsiSI	CCGG	1 cut(s)	97
BslI	CCNNNNNNNGG	1 cut(s)	425
BsnI	GGCC	1 cut(s)	95
Bsp120I	GGGCCC	1 cut(s)	93
Bsp1286I	GDGCHC	3 cut(s)	97, 210, 247
Bsp143I	GATC	1 cut(s)	13
BspANI	GGCC	1 cut(s)	95
BspLI	GGNNCC	1 cut(s)	95
BsrI	ACTGG	2 cut(s)	309, 429
BssECI	CCNNGG	1 cut(s)	30
BssMI	GATC	1 cut(s)	13
Bst2UI	CCWGG	1 cut(s)	31
Bst4CI	ACNGT	3 cut(s)	184, 325, 404
Bst6I	CTCTTC	1 cut(s)	427
BstDEI	CTNAG	1 cut(s)	255
BstF5I	GGATG	1 cut(s)	238
BstHHI	GCGC	1 cut(s)	27
BstKTI	GATC	1 cut(s)	16
BstMBI	GATC	1 cut(s)	13
BstMWI	GCNNNNNNNGC	2 cut(s)	242, 287
BstNI	CCWGG	1 cut(s)	31
BstSCI	CCNGG	2 cut(s)	29, 95
BstSFI	CTRYAG	1 cut(s)	342
BstSLI	GKGCMC	2 cut(s)	97, 210
BstV1I	GCAGC	1 cut(s)	274
BsuRI	GGCC	1 cut(s)	95
BtsCI	GGATG	1 cut(s)	238
BtsI	GCAGTG	1 cut(s)	208
BtsIMutI	CAGTG	2 cut(s)	208, 316
CfoI	GCGC	1 cut(s)	27
Cfr13I	GGNCC	2 cut(s)	93, 94
CseI	GACGC	1 cut(s)	92
CviAII	CATG	2 cut(s)	248, 331
CviJI	RGCY	6 cut(s)	7, 95, 142, 245, 275, 446
CviKI_1	RGCY	6 cut(s)	7, 95, 142, 245, 275, 446
DdeI	CTNAG	1 cut(s)	255
DpnI	GATC	1 cut(s)	15
DpnII	GATC	1 cut(s)	13
DraIII	CACNNNGTG	1 cut(s)	203
Eam1104I	CTCTTC	1 cut(s)	427
EarI	CTCTTC	1 cut(s)	427
Ecl136II	GAGCTC	1 cut(s)	245
Eco24I	GRGCYC	2 cut(s)	97, 247
Eco53kI	GAGCTC	1 cut(s)	245
Eco57I	CTGAAG	1 cut(s)	285
EcoICRI	GAGCTC	1 cut(s)	245
EcoO109I	RGGNCCY	1 cut(s)	93
EcoRII	CCWGG	1 cut(s)	29
EcoT38I	GRGCYC	2 cut(s)	97, 247
FaeI	CATG	2 cut(s)	251, 334
FaiI	YATR	5 cut(s)	90, 137, 249, 285, 332
FatI	CATG	2 cut(s)	247, 330
FbaI	TGATCA	1 cut(s)	13
Fnu4HI	GCNGC	1 cut(s)	288
FokI	GGATG	1 cut(s)	245
FriOI	GRGCYC	2 cut(s)	97, 247
Fsp4HI	GCNGC	1 cut(s)	288
GlaI	GCGC	1 cut(s)	26
GluI	GCNGC	1 cut(s)	288
HaeIII	GGCC	1 cut(s)	95
HapII	CCGG	1 cut(s)	97
HgaI	GACGC	1 cut(s)	92
HhaI	GCGC	1 cut(s)	27
Hin1II	CATG	2 cut(s)	251, 334
Hin6I	GCGC	1 cut(s)	25
HinP1I	GCGC	1 cut(s)	25
HincII	GTYRAC	2 cut(s)	306, 391
HindII	GTYRAC	2 cut(s)	306, 391
HinfI	GANTC	1 cut(s)	259
HpaII	CCGG	1 cut(s)	97
HphI	GGTGA	1 cut(s)	144
Hpy166II	GTNNAC	3 cut(s)	208, 306, 391
Hpy188I	TCNGA	1 cut(s)	379
Hpy188III	TCNNGA	3 cut(s)	107, 263, 336
Hpy8I	GTNNAC	3 cut(s)	208, 306, 391
Hpy99I	CGWCG	1 cut(s)	60
HpyCH4III	ACNGT	3 cut(s)	184, 325, 404
HpyCH4IV	ACGT	2 cut(s)	82, 371
HpyCH4V	TGCA	5 cut(s)	169, 208, 213, 236, 452
HpyF10VI	GCNNNNNNNGC	2 cut(s)	242, 287
HpyF3I	CTNAG	1 cut(s)	255
HpySE526I	ACGT	2 cut(s)	82, 371
Hsp92II	CATG	2 cut(s)	251, 334
HspAI	GCGC	1 cut(s)	25
Ksp22I	TGATCA	1 cut(s)	13
Kzo9I	GATC	1 cut(s)	13
LpnPI	CCDG	9 cut(s)	16, 43, 110, 142, 168, 276, 321, 322, 410
Lsp1109I	GCAGC	1 cut(s)	274
LweI	GCATC	2 cut(s)	223, 439
MaeII	ACGT	2 cut(s)	82, 371
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	1 cut(s)	15
MboI	GATC	1 cut(s)	13
MboII	GAAGA	1 cut(s)	444
MhlI	GDGCHC	3 cut(s)	97, 210, 247
MluCI	AATT	6 cut(s)	116, 124, 170, 190, 220, 356
MnlI	CCTC	2 cut(s)	154, 373
MseI	TTAA	1 cut(s)	174
MspI	CCGG	1 cut(s)	97
MspR9I	CCNGG	2 cut(s)	31, 97
MvaI	CCWGG	1 cut(s)	31
MwoI	GCNNNNNNNGC	2 cut(s)	242, 287
NciI	CCSGG	1 cut(s)	97
NdeII	GATC	1 cut(s)	13
NlaIII	CATG	2 cut(s)	251, 334
NlaIV	GGNNCC	1 cut(s)	95
PfeI	GAWTC	1 cut(s)	259
PkrI	GCNGC	1 cut(s)	289
PsiI	TTATAA	1 cut(s)	137
Psp124BI	GAGCTC	1 cut(s)	247
Psp6I	CCWGG	1 cut(s)	29
PspGI	CCWGG	1 cut(s)	29
PspN4I	GGNNCC	1 cut(s)	95
PspOMI	GGGCCC	1 cut(s)	93
PspPI	GGNCC	2 cut(s)	93, 94
SacI	GAGCTC	1 cut(s)	247
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	1 cut(s)	288
Sau3AI	GATC	1 cut(s)	13
Sau96I	GGNCC	2 cut(s)	93, 94
ScrFI	CCNGG	2 cut(s)	31, 97
SduI	GDGCHC	3 cut(s)	97, 210, 247
SetI	ASST	7 cut(s)	85, 247, 277, 374, 384, 421, 448
SfaNI	GCATC	2 cut(s)	223, 439
SfcI	CTRYAG	1 cut(s)	342
Sse9I	AATT	6 cut(s)	116, 124, 170, 190, 220, 356
SstI	GAGCTC	1 cut(s)	247
StyD4I	CCNGG	2 cut(s)	29, 95
TaaI	ACNGT	3 cut(s)	184, 325, 404
TaiI	ACGT	2 cut(s)	85, 374
TasI	AATT	6 cut(s)	116, 124, 170, 190, 220, 356
TfiI	GAWTC	1 cut(s)	259
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TscAI	CASTG	2 cut(s)	215, 316
TseI	GCWGC	1 cut(s)	287
TspDTI	ATGAA	4 cut(s)	17, 192, 319, 425
TspGWI	ACGGA	1 cut(s)	232
TspRI	CASTG	2 cut(s)	215, 316
VneI	GTGCAC	1 cut(s)	206
XapI	RAATTY	2 cut(s)	124, 356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.