pycom06g02830

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Forward (+)
3448651 .. 3449193
543 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g02830.1

Sequence Viewer

Length: 543 bp
ATGCTTTATTACCAGACTTGGTCTGAATGTGAGACAGGCAAAGATATGAATGTTGTACAAACAGAAGATAGTTTTATAATGAAGCCTATTGATCAAAGAGAGCGCACCAGAAATCGTAATGATGTTCAGACTCGTCGCATGAAGAACAGAGAACGACAACGTAGATATAGAGCCCGTAAGCGTCTTGAAGCAGATTTGAAGAAGTCTAGCATCATAAAGCAACCAACTACAGCAGAAGTAGAAGTGCAACGAAATGAGTTCATTTACACACCCCGTGTGTACTGTAAACGAGATTGGAAAAAGGATGCAAGGAGGGTTCATGTTTCTAAGGCCCCTGAAATTACCCCTAATGGTTATGCTGCCCCTACTCTTACGTCAACCAGTGAGGGTCAAAGTGTGTTCTTGTCTGGACCTAAGGCAGAGCCACAATTAGATTTTGAATCCCTGTCTGAGATAACTGTGAACCAGAGTAACCGCGAAATGCATGTATCTAACTTTGGTCGAAGAGATTGGAAAGCCGATGCAAGAAAAAAGAAAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

181

Amino Acids

21.32

Weight (kDa)

9.92

Isoelectric Point (pI)

50.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 77
AccII CGCG 1 cut(s) 477
AciI CCGC 1 cut(s) 475
AdeI CACNNNGTG 1 cut(s) 275
AfaI GTAC 2 cut(s) 57, 281
AgsI TTSAA 3 cut(s) 188, 199, 440
Alw26I GTCTC 1 cut(s) 26
AoxI GGCC 1 cut(s) 330
ApeKI GCWGC 1 cut(s) 359
AspLEI GCGC 1 cut(s) 105
AspS9I GGNCC 2 cut(s) 331, 410
AvaII GGWCC 1 cut(s) 410
AxyI CCTNAGG 1 cut(s) 414
BanII GRGCYC 1 cut(s) 175
BbvI GCAGC 1 cut(s) 346
BclI TGATCA 1 cut(s) 91
BcoDI GTCTC 1 cut(s) 26
BfaI CTAG 1 cut(s) 207
BfmI CTRYAG 1 cut(s) 228
BisI GCNGC 1 cut(s) 360
BlsI GCNGC 1 cut(s) 361
Bme18I GGWCC 1 cut(s) 410
BmgT120I GGNCC 2 cut(s) 331, 410
BmiI GGNNCC 1 cut(s) 333
BmsI GCATC 3 cut(s) 219, 295, 511
Bse1I ACTGG 1 cut(s) 381
Bse21I CCTNAGG 1 cut(s) 414
BseGI GGATG 1 cut(s) 310
BseMII CTCAG 1 cut(s) 441
BseNI ACTGG 1 cut(s) 381
BseXI GCAGC 1 cut(s) 346
Bsh1236I CGCG 1 cut(s) 477
BshFI GGCC 1 cut(s) 332
BsmAI GTCTC 1 cut(s) 26
BsnI GGCC 1 cut(s) 332
Bsp1286I GDGCHC 1 cut(s) 175
Bsp1407I TGTACA 1 cut(s) 55
Bsp143I GATC 1 cut(s) 91
BspACI CCGC 1 cut(s) 475
BspANI GGCC 1 cut(s) 332
BspCNI CTCAG 1 cut(s) 442
BspFNI CGCG 1 cut(s) 477
BspLI GGNNCC 1 cut(s) 333
BsrGI TGTACA 1 cut(s) 55
BsrI ACTGG 1 cut(s) 381
BssMI GATC 1 cut(s) 91
Bst4CI ACNGT 2 cut(s) 284, 460
Bst6I CTCTTC 1 cut(s) 499
BstAUI TGTACA 1 cut(s) 55
BstDEI CTNAG 3 cut(s) 327, 414, 450
BstF5I GGATG 1 cut(s) 310
BstFNI CGCG 1 cut(s) 477
BstHHI GCGC 1 cut(s) 105
BstKTI GATC 1 cut(s) 94
BstMAI GTCTC 1 cut(s) 26
BstMBI GATC 1 cut(s) 91
BstNSI RCATGY 1 cut(s) 488
BstSFI CTRYAG 1 cut(s) 228
BstUI CGCG 1 cut(s) 477
BstV1I GCAGC 1 cut(s) 346
Bsu36I CCTNAGG 1 cut(s) 414
BsuRI GGCC 1 cut(s) 332
BtsCI GGATG 1 cut(s) 310
BtsIMutI CAGTG 1 cut(s) 388
CfoI GCGC 1 cut(s) 105
Cfr13I GGNCC 2 cut(s) 331, 410
CseI GACGC 1 cut(s) 170
Csp6I GTAC 2 cut(s) 56, 280
CviAII CATG 3 cut(s) 139, 320, 485
CviJI RGCY 5 cut(s) 85, 173, 332, 424, 518
CviKI_1 RGCY 5 cut(s) 85, 173, 332, 424, 518
CviQI GTAC 2 cut(s) 56, 280
DdeI CTNAG 3 cut(s) 327, 414, 450
DpnI GATC 1 cut(s) 93
DpnII GATC 1 cut(s) 91
DraIII CACNNNGTG 1 cut(s) 275
Eam1104I CTCTTC 1 cut(s) 499
EarI CTCTTC 1 cut(s) 499
Eco24I GRGCYC 1 cut(s) 175
Eco47I GGWCC 1 cut(s) 410
Eco81I CCTNAGG 1 cut(s) 414
EcoO109I RGGNCCY 1 cut(s) 331
EcoT22I ATGCAT 1 cut(s) 486
EcoT38I GRGCYC 1 cut(s) 175
FaeI CATG 3 cut(s) 142, 323, 488
FaiI YATR 8 cut(s) 47, 77, 140, 168, 215, 321, 357, 486
FatI CATG 3 cut(s) 138, 319, 484
FbaI TGATCA 1 cut(s) 91
Fnu4HI GCNGC 1 cut(s) 360
FokI GGATG 1 cut(s) 317
FriOI GRGCYC 1 cut(s) 175
Fsp4HI GCNGC 1 cut(s) 360
FspBI CTAG 1 cut(s) 207
GlaI GCGC 1 cut(s) 104
GluI GCNGC 1 cut(s) 360
HaeIII GGCC 1 cut(s) 332
HgaI GACGC 1 cut(s) 170
HhaI GCGC 1 cut(s) 105
Hin1II CATG 3 cut(s) 142, 323, 488
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HincII GTYRAC 1 cut(s) 378
HindII GTYRAC 1 cut(s) 378
HinfI GANTC 2 cut(s) 130, 440
Hpy166II GTNNAC 4 cut(s) 280, 287, 378, 463
Hpy188I TCNGA 3 cut(s) 25, 129, 451
Hpy188III TCNNGA 2 cut(s) 185, 408
Hpy8I GTNNAC 4 cut(s) 280, 287, 378, 463
Hpy99I CGWCG 1 cut(s) 138
HpyCH4III ACNGT 2 cut(s) 284, 460
HpyCH4IV ACGT 2 cut(s) 160, 374
HpyCH4V TGCA 4 cut(s) 247, 308, 484, 524
HpyF3I CTNAG 3 cut(s) 327, 414, 450
HpySE526I ACGT 2 cut(s) 160, 374
Hsp92II CATG 3 cut(s) 142, 323, 488
HspAI GCGC 1 cut(s) 103
Ksp22I TGATCA 1 cut(s) 91
Kzo9I GATC 1 cut(s) 91
LpnPI CCDG 8 cut(s) 21, 26, 121, 348, 393, 394, 458, 479
Lsp1109I GCAGC 1 cut(s) 346
LweI GCATC 3 cut(s) 219, 295, 511
MaeI CTAG 1 cut(s) 207
MaeII ACGT 2 cut(s) 160, 374
MaeIII GTNAC 1 cut(s) 470
MalI GATC 1 cut(s) 93
MboI GATC 1 cut(s) 91
MboII GAAGA 4 cut(s) 77, 154, 211, 516
MhlI GDGCHC 1 cut(s) 175
MluCI AATT 2 cut(s) 339, 428
MlyI GAGTC 1 cut(s) 124
MnlI CCTC 2 cut(s) 306, 379
Mph1103I ATGCAT 1 cut(s) 486
MvnI CGCG 1 cut(s) 477
NdeII GATC 1 cut(s) 91
NlaIII CATG 3 cut(s) 142, 323, 488
NlaIV GGNNCC 1 cut(s) 333
NsiI ATGCAT 1 cut(s) 486
NspI RCATGY 1 cut(s) 488
PfeI GAWTC 1 cut(s) 440
PflFI GACNNNGTC 1 cut(s) 19
PkrI GCNGC 1 cut(s) 361
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
PsiI TTATAA 1 cut(s) 77
PspN4I GGNNCC 1 cut(s) 333
PspPI GGNCC 2 cut(s) 331, 410
PsyI GACNNNGTC 1 cut(s) 19
RsaI GTAC 2 cut(s) 57, 281
RsaNI GTAC 2 cut(s) 56, 280
SatI GCNGC 1 cut(s) 360
Sau3AI GATC 1 cut(s) 91
Sau96I GGNCC 2 cut(s) 331, 410
SchI GAGTC 1 cut(s) 124
SduI GDGCHC 1 cut(s) 175
SetI ASST 3 cut(s) 163, 377, 415
SfaNI GCATC 3 cut(s) 219, 295, 511
SfcI CTRYAG 1 cut(s) 228
SinI GGWCC 1 cut(s) 410
Sse9I AATT 2 cut(s) 339, 428
SsiI CCGC 1 cut(s) 475
SspMI CTAG 1 cut(s) 207
TaaI ACNGT 2 cut(s) 284, 460
TaiI ACGT 2 cut(s) 163, 377
TaqI TCGA 1 cut(s) 502
TasI AATT 2 cut(s) 339, 428
TatI WGTACW 2 cut(s) 55, 279
TfiI GAWTC 1 cut(s) 440
TscAI CASTG 1 cut(s) 388
TseI GCWGC 1 cut(s) 359
TspDTI ATGAA 5 cut(s) 62, 95, 155, 250, 308
TspRI CASTG 1 cut(s) 388
Tth111I GACNNNGTC 1 cut(s) 19
VpaK11BI GGWCC 1 cut(s) 410
XceI RCATGY 1 cut(s) 488
XspI CTAG 1 cut(s) 207
Zsp2I ATGCAT 1 cut(s) 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.