Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0008718

Physical Location & Seq

Genomic Coordinates Forward (+)

4251225 .. 4254775

Gene Structure 3551 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1034200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGAAGCCTATTGATCAAAGAGAGCGCACCAGAAATCGTAATGATGTTCAGACTCGTCGCATGAAGAACAGAGAACGACAACGTAGATATAGAGCCCGTAAGCGTCTTGAAGCAGATTTGAAGAAGTCTAGCATTATAAAGCAACCAACTGCACCAGAAGTAGAAGTGCAACGAAATGAGTTCATTTACACACCCCGTGTGTACTGTAAACGAGATTGGAAAAAGGATGCAAGGAGTGCTCATGTTTCTAAGGCCGCTGAAATTACCCCTAATGGTTATGCTGTCCCTACTCTTACGTCAACCAGTGAGGGTCAAAGTGTGTTCTTGTTTGGACCTAAGGCAGAGCCGCAATTAGATATTGAATCCCTGTCTGAGATAACTGTGAACCAGAATAACTGCGAAATGCATGTATCTAACTTTGGTCGAAGAGATTGGAAAGCCGATGCAAGAAAGAAGAAAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

155

Amino Acids

18.12

Weight (kDa)

10.21

Isoelectric Point (pI)

49.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32630 AT1G32630
fragaria_vesca	FvH4_5g22080
malus_domestica	MD06G1034100.v1.1 MD06G1034200.v1.1
prunus_persica	Prupe.5G036500_v2.0.a1 Prupe.5G036500_v2.0.a1
pyrus_communis	pycom06g02820 pycom06g02830
rosa_chinensis	RchiOBHm_Chr7g0209731
rosa_laevigata	RLG00000003098
rosa_multiflora	Rmu_sc0002616.1_g000017
rosa_roxburghii	Rroxscaffold_3G00249120
rosa_rugosa	Rorug07G0115700 Rorug07G0115800 Rorug07G0115900 Rorug07G0116000 Rorug07G0116000
rosa_samantha	Rh7AG249400 Rh7BG243300 Rh7CG265400 Rh7DG255200
rosa_wichuraiana	Rw7G021140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	137
AciI	CCGC	2 cut(s)	255, 347
AdeI	CACNNNGTG	1 cut(s)	197
AfaI	GTAC	1 cut(s)	203
AgsI	TTSAA	3 cut(s)	110, 121, 362
Alw21I	GWGCWC	1 cut(s)	241
AoxI	GGCC	1 cut(s)	252
AspLEI	GCGC	1 cut(s)	27
AspS9I	GGNCC	1 cut(s)	332
AvaII	GGWCC	1 cut(s)	332
AxyI	CCTNAGG	1 cut(s)	336
BanII	GRGCYC	1 cut(s)	97
Bbv12I	GWGCWC	1 cut(s)	241
BclI	TGATCA	1 cut(s)	13
BfaI	CTAG	1 cut(s)	129
BisI	GCNGC	2 cut(s)	255, 347
BlsI	GCNGC	2 cut(s)	256, 348
Bme18I	GGWCC	1 cut(s)	332
BmgT120I	GGNCC	1 cut(s)	332
BmsI	GCATC	2 cut(s)	217, 433
Bse1I	ACTGG	1 cut(s)	303
Bse21I	CCTNAGG	1 cut(s)	336
BseGI	GGATG	1 cut(s)	232
BseMII	CTCAG	1 cut(s)	363
BseNI	ACTGG	1 cut(s)	303
BsgI	GTGCAG	1 cut(s)	135
BshFI	GGCC	1 cut(s)	254
BsiHKAI	GWGCWC	1 cut(s)	241
BslFI	GGGAC	1 cut(s)	269
BsmFI	GGGAC	1 cut(s)	269
BsnI	GGCC	1 cut(s)	254
Bsp1286I	GDGCHC	2 cut(s)	97, 241
Bsp143I	GATC	1 cut(s)	13
BspACI	CCGC	2 cut(s)	255, 347
BspANI	GGCC	1 cut(s)	254
BspCNI	CTCAG	1 cut(s)	364
BsrI	ACTGG	1 cut(s)	303
BssMI	GATC	1 cut(s)	13
Bst4CI	ACNGT	2 cut(s)	206, 382
Bst6I	CTCTTC	1 cut(s)	421
BstAPI	GCANNNNNTGC	1 cut(s)	236
BstDEI	CTNAG	3 cut(s)	249, 336, 372
BstF5I	GGATG	1 cut(s)	232
BstHHI	GCGC	1 cut(s)	27
BstKTI	GATC	1 cut(s)	16
BstMBI	GATC	1 cut(s)	13
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstNSI	RCATGY	1 cut(s)	410
Bsu36I	CCTNAGG	1 cut(s)	336
BsuRI	GGCC	1 cut(s)	254
BtsCI	GGATG	1 cut(s)	232
BtsIMutI	CAGTG	1 cut(s)	310
CfoI	GCGC	1 cut(s)	27
Cfr13I	GGNCC	1 cut(s)	332
CseI	GACGC	1 cut(s)	92
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	3 cut(s)	61, 242, 407
CviJI	RGCY	5 cut(s)	7, 95, 254, 346, 440
CviKI_1	RGCY	5 cut(s)	7, 95, 254, 346, 440
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	3 cut(s)	249, 336, 372
DpnI	GATC	1 cut(s)	15
DpnII	GATC	1 cut(s)	13
DraIII	CACNNNGTG	1 cut(s)	197
Eam1104I	CTCTTC	1 cut(s)	421
EarI	CTCTTC	1 cut(s)	421
Eco24I	GRGCYC	1 cut(s)	97
Eco47I	GGWCC	1 cut(s)	332
Eco81I	CCTNAGG	1 cut(s)	336
EcoT22I	ATGCAT	1 cut(s)	408
EcoT38I	GRGCYC	1 cut(s)	97
FaeI	CATG	3 cut(s)	64, 245, 410
FaiI	YATR	6 cut(s)	62, 90, 137, 243, 279, 408
FaqI	GGGAC	1 cut(s)	269
FatI	CATG	3 cut(s)	60, 241, 406
FbaI	TGATCA	1 cut(s)	13
Fnu4HI	GCNGC	2 cut(s)	255, 347
FokI	GGATG	1 cut(s)	239
FriOI	GRGCYC	1 cut(s)	97
Fsp4HI	GCNGC	2 cut(s)	255, 347
FspBI	CTAG	1 cut(s)	129
GlaI	GCGC	1 cut(s)	26
GluI	GCNGC	2 cut(s)	255, 347
HaeIII	GGCC	1 cut(s)	254
HgaI	GACGC	1 cut(s)	92
HhaI	GCGC	1 cut(s)	27
Hin1II	CATG	3 cut(s)	64, 245, 410
Hin6I	GCGC	1 cut(s)	25
HinP1I	GCGC	1 cut(s)	25
HincII	GTYRAC	1 cut(s)	300
HindII	GTYRAC	1 cut(s)	300
HinfI	GANTC	2 cut(s)	52, 362
Hpy166II	GTNNAC	4 cut(s)	202, 209, 300, 385
Hpy188I	TCNGA	2 cut(s)	51, 373
Hpy188III	TCNNGA	1 cut(s)	107
Hpy8I	GTNNAC	4 cut(s)	202, 209, 300, 385
Hpy99I	CGWCG	1 cut(s)	60
HpyCH4III	ACNGT	2 cut(s)	206, 382
HpyCH4IV	ACGT	2 cut(s)	82, 296
HpyCH4V	TGCA	5 cut(s)	152, 169, 230, 406, 446
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
HpyF3I	CTNAG	3 cut(s)	249, 336, 372
HpySE526I	ACGT	2 cut(s)	82, 296
Hsp92II	CATG	3 cut(s)	64, 245, 410
HspAI	GCGC	1 cut(s)	25
Ksp22I	TGATCA	1 cut(s)	13
Kzo9I	GATC	1 cut(s)	13
LpnPI	CCDG	5 cut(s)	43, 168, 316, 380, 401
LweI	GCATC	2 cut(s)	217, 433
MaeI	CTAG	1 cut(s)	129
MaeII	ACGT	2 cut(s)	82, 296
MalI	GATC	1 cut(s)	15
MboI	GATC	1 cut(s)	13
MboII	GAAGA	3 cut(s)	76, 133, 438
MhlI	GDGCHC	2 cut(s)	97, 241
MluCI	AATT	2 cut(s)	261, 350
MlyI	GAGTC	1 cut(s)	46
MnlI	CCTC	1 cut(s)	301
Mph1103I	ATGCAT	1 cut(s)	408
MspA1I	CMGCKG	1 cut(s)	257
MwoI	GCNNNNNNNGC	1 cut(s)	236
NdeII	GATC	1 cut(s)	13
NlaIII	CATG	3 cut(s)	64, 245, 410
NsiI	ATGCAT	1 cut(s)	408
NspI	RCATGY	1 cut(s)	410
PfeI	GAWTC	1 cut(s)	362
PkrI	GCNGC	2 cut(s)	256, 348
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
PsiI	TTATAA	1 cut(s)	137
PspPI	GGNCC	1 cut(s)	332
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
SatI	GCNGC	2 cut(s)	255, 347
Sau3AI	GATC	1 cut(s)	13
Sau96I	GGNCC	1 cut(s)	332
SchI	GAGTC	1 cut(s)	46
SduI	GDGCHC	2 cut(s)	97, 241
SetI	ASST	3 cut(s)	85, 299, 337
SfaNI	GCATC	2 cut(s)	217, 433
SinI	GGWCC	1 cut(s)	332
Sse9I	AATT	2 cut(s)	261, 350
SsiI	CCGC	2 cut(s)	255, 347
SspMI	CTAG	1 cut(s)	129
TaaI	ACNGT	2 cut(s)	206, 382
TaiI	ACGT	2 cut(s)	85, 299
TaqI	TCGA	1 cut(s)	424
TasI	AATT	2 cut(s)	261, 350
TatI	WGTACW	1 cut(s)	201
TauI	GCSGC	2 cut(s)	257, 349
TfiI	GAWTC	1 cut(s)	362
TscAI	CASTG	1 cut(s)	310
TspDTI	ATGAA	3 cut(s)	17, 77, 172
TspRI	CASTG	1 cut(s)	310
VpaK11BI	GGWCC	1 cut(s)	332
XceI	RCATGY	1 cut(s)	410
XspI	CTAG	1 cut(s)	129
Zsp2I	ATGCAT	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.