Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0008718

Physical Location & Seq

Genomic Coordinates Forward (+)

13429059 .. 13429529

Gene Structure 471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g22080.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGAAGCCTATTGATCAAAGAGAGCGCACTGGGGGTCGTAGTGACATTCACACTCGTCGCCTGAAGAACCGAGAAAGGCAACGTCGATATAGGGCTCGGAAGCGTCTTGAAGCAGAATTGAAAAATCCCAGCACTATAAAGCCCTCAACTTCACCAAATGTACAAGTACAACTTAATGGAACTGTTAGCAATTACACACCCCGTGTGTACTGCAAACGGAATTGGAAAAAGGATGCAAGGAGAGGTCATGTTTCTAGGGATCCTGAAGTTACAGCCAATGCTTATGTTGCCCCTACTTTGATGTCAACCGGTGAGAGTCAAACTGTGTTTCTCGCTGGAACTACAGCAGAAGGAAAATTTGAGAGTGAAACGTATTCAGAAGTATCTGTTGACCGAAATAACAGTGAAATGAATAGACCTAAACTGGGGAGAAGAGATTGGAAAGCTGATGCAAGAAAGAAGAAAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

157

Amino Acids

18.05

Weight (kDa)

10.6

Isoelectric Point (pI)

41.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32630 AT1G32630
fragaria_vesca	FvH4_5g22080
malus_domestica	MD06G1034100.v1.1 MD06G1034200.v1.1
prunus_persica	Prupe.5G036500_v2.0.a1 Prupe.5G036500_v2.0.a1
pyrus_communis	pycom06g02820 pycom06g02830
rosa_chinensis	RchiOBHm_Chr7g0209731
rosa_laevigata	RLG00000003098
rosa_multiflora	Rmu_sc0002616.1_g000017
rosa_roxburghii	Rroxscaffold_3G00249120
rosa_rugosa	Rorug07G0115700 Rorug07G0115800 Rorug07G0115900 Rorug07G0116000 Rorug07G0116000
rosa_samantha	Rh7AG249400 Rh7BG243300 Rh7CG265400 Rh7DG255200
rosa_wichuraiana	Rw7G021140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	254, 267
AcsI	RAATTY	1 cut(s)	356
AcuI	CTGAAG	2 cut(s)	83, 285
AdeI	CACNNNGTG	1 cut(s)	203
AfaI	GTAC	3 cut(s)	162, 168, 209
AfiI	CCNNNNNNNGG	1 cut(s)	425
AgeI	ACCGGT	1 cut(s)	308
AgsI	TTSAA	2 cut(s)	110, 121
AluBI	AGCT	1 cut(s)	446
AluI	AGCT	1 cut(s)	446
AlwI	GGATC	2 cut(s)	254, 267
ApoI	RAATTY	1 cut(s)	356
AsiGI	ACCGGT	1 cut(s)	308
AspLEI	GCGC	1 cut(s)	27
AsuHPI	GGTGA	2 cut(s)	144, 323
BamHI	GGATCC	1 cut(s)	259
BanII	GRGCYC	1 cut(s)	97
BclI	TGATCA	1 cut(s)	13
BfaI	CTAG	1 cut(s)	255
BfmI	CTRYAG	1 cut(s)	342
BmiI	GGNNCC	1 cut(s)	261
BmrI	ACTGGG	2 cut(s)	39, 434
BmsI	GCATC	2 cut(s)	223, 439
BmuI	ACTGGG	2 cut(s)	39, 434
BsaWI	WCCGGW	1 cut(s)	308
Bsc4I	CCNNNNNNNGG	1 cut(s)	425
Bse118I	RCCGGY	1 cut(s)	308
Bse1I	ACTGG	2 cut(s)	34, 429
BseGI	GGATG	1 cut(s)	238
BseLI	CCNNNNNNNGG	1 cut(s)	425
BseNI	ACTGG	2 cut(s)	34, 429
BseYI	CCCAGC	1 cut(s)	128
BshTI	ACCGGT	1 cut(s)	308
BsiSI	CCGG	1 cut(s)	309
BslI	CCNNNNNNNGG	1 cut(s)	425
Bsp1286I	GDGCHC	1 cut(s)	97
Bsp1407I	TGTACA	1 cut(s)	160
Bsp143I	GATC	2 cut(s)	13, 259
BspLI	GGNNCC	1 cut(s)	261
BspPI	GGATC	2 cut(s)	254, 267
BsrFI	RCCGGY	1 cut(s)	308
BsrGI	TGTACA	1 cut(s)	160
BsrI	ACTGG	2 cut(s)	34, 429
BssAI	RCCGGY	1 cut(s)	308
BssMI	GATC	2 cut(s)	13, 259
Bst4CI	ACNGT	3 cut(s)	184, 325, 404
Bst6I	CTCTTC	1 cut(s)	427
BstAUI	TGTACA	1 cut(s)	160
BstF5I	GGATG	1 cut(s)	238
BstHHI	GCGC	1 cut(s)	27
BstKTI	GATC	2 cut(s)	16, 262
BstMBI	GATC	2 cut(s)	13, 259
BstMWI	GCNNNNNNNGC	1 cut(s)	287
BstSFI	CTRYAG	1 cut(s)	342
BstX2I	RGATCY	1 cut(s)	259
BstYI	RGATCY	1 cut(s)	259
BtsCI	GGATG	1 cut(s)	238
BtsIMutI	CAGTG	2 cut(s)	27, 409
CfoI	GCGC	1 cut(s)	27
Cfr10I	RCCGGY	1 cut(s)	308
CseI	GACGC	1 cut(s)	92
Csp6I	GTAC	3 cut(s)	161, 167, 208
CspAI	ACCGGT	1 cut(s)	308
CviAII	CATG	1 cut(s)	248
CviJI	RGCY	5 cut(s)	7, 95, 142, 275, 446
CviKI_1	RGCY	5 cut(s)	7, 95, 142, 275, 446
CviQI	GTAC	3 cut(s)	161, 167, 208
DpnI	GATC	2 cut(s)	15, 261
DpnII	GATC	2 cut(s)	13, 259
DraIII	CACNNNGTG	1 cut(s)	203
Eam1104I	CTCTTC	1 cut(s)	427
EarI	CTCTTC	1 cut(s)	427
Eco24I	GRGCYC	1 cut(s)	97
Eco57I	CTGAAG	2 cut(s)	83, 285
EcoT38I	GRGCYC	1 cut(s)	97
FaeI	CATG	1 cut(s)	251
FaiI	YATR	4 cut(s)	90, 137, 249, 285
FalI	AAGNNNNNCTT	2 cut(s)	156, 188
FatI	CATG	1 cut(s)	247
FbaI	TGATCA	1 cut(s)	13
FokI	GGATG	1 cut(s)	245
FriOI	GRGCYC	1 cut(s)	97
FspBI	CTAG	1 cut(s)	255
GlaI	GCGC	1 cut(s)	26
GsaI	CCCAGC	1 cut(s)	132
HapII	CCGG	1 cut(s)	309
HgaI	GACGC	1 cut(s)	92
HhaI	GCGC	1 cut(s)	27
Hin1II	CATG	1 cut(s)	251
Hin6I	GCGC	1 cut(s)	25
HinP1I	GCGC	1 cut(s)	25
HincII	GTYRAC	2 cut(s)	306, 391
HindII	GTYRAC	2 cut(s)	306, 391
HinfI	GANTC	1 cut(s)	316
HpaII	CCGG	1 cut(s)	309
HphI	GGTGA	2 cut(s)	144, 323
Hpy166II	GTNNAC	3 cut(s)	208, 306, 391
Hpy188I	TCNGA	2 cut(s)	99, 379
Hpy188III	TCNNGA	2 cut(s)	107, 263
Hpy8I	GTNNAC	3 cut(s)	208, 306, 391
Hpy99I	CGWCG	2 cut(s)	60, 87
HpyAV	CCTTC	1 cut(s)	344
HpyCH4III	ACNGT	3 cut(s)	184, 325, 404
HpyCH4IV	ACGT	2 cut(s)	82, 371
HpyCH4V	TGCA	3 cut(s)	213, 236, 452
HpyF10VI	GCNNNNNNNGC	1 cut(s)	287
HpySE526I	ACGT	2 cut(s)	82, 371
Hsp92II	CATG	1 cut(s)	251
HspAI	GCGC	1 cut(s)	25
Ksp22I	TGATCA	1 cut(s)	13
Kzo9I	GATC	2 cut(s)	13, 259
LpnPI	CCDG	7 cut(s)	15, 74, 142, 276, 321, 322, 410
LweI	GCATC	2 cut(s)	223, 439
MaeI	CTAG	1 cut(s)	255
MaeII	ACGT	2 cut(s)	82, 371
MaeIII	GTNAC	2 cut(s)	41, 268
MalI	GATC	2 cut(s)	15, 261
MboI	GATC	2 cut(s)	13, 259
MboII	GAAGA	2 cut(s)	76, 444
MflI	RGATCY	1 cut(s)	259
MhlI	GDGCHC	1 cut(s)	97
MluCI	AATT	4 cut(s)	116, 190, 220, 356
MlyI	GAGTC	1 cut(s)	325
MnlI	CCTC	2 cut(s)	154, 236
MseI	TTAA	1 cut(s)	174
MspI	CCGG	1 cut(s)	309
MwoI	GCNNNNNNNGC	1 cut(s)	287
NdeII	GATC	2 cut(s)	13, 259
NlaIII	CATG	1 cut(s)	251
NlaIV	GGNNCC	1 cut(s)	261
NmuCI	GTSAC	1 cut(s)	41
PinAI	ACCGGT	1 cut(s)	308
PleI	GAGTC	1 cut(s)	324
PpsI	GAGTC	1 cut(s)	324
PspFI	CCCAGC	1 cut(s)	128
PspN4I	GGNNCC	1 cut(s)	261
PsuI	RGATCY	1 cut(s)	259
RsaI	GTAC	3 cut(s)	162, 168, 209
RsaNI	GTAC	3 cut(s)	161, 167, 208
SaqAI	TTAA	1 cut(s)	174
Sau3AI	GATC	2 cut(s)	13, 259
SchI	GAGTC	1 cut(s)	325
SduI	GDGCHC	1 cut(s)	97
SetI	ASST	5 cut(s)	85, 247, 374, 421, 448
SfaNI	GCATC	2 cut(s)	223, 439
SfcI	CTRYAG	1 cut(s)	342
Sse9I	AATT	4 cut(s)	116, 190, 220, 356
SspMI	CTAG	1 cut(s)	255
TaaI	ACNGT	3 cut(s)	184, 325, 404
TaiI	ACGT	2 cut(s)	85, 374
TaqI	TCGA	1 cut(s)	85
TaqII	GACCGA	1 cut(s)	408
TasI	AATT	4 cut(s)	116, 190, 220, 356
TatI	WGTACW	3 cut(s)	160, 166, 207
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TscAI	CASTG	2 cut(s)	34, 409
TseFI	GTSAC	1 cut(s)	41
Tsp45I	GTSAC	1 cut(s)	41
TspDTI	ATGAA	2 cut(s)	17, 425
TspGWI	ACGGA	1 cut(s)	232
TspRI	CASTG	2 cut(s)	34, 409
XapI	RAATTY	1 cut(s)	356
XspI	CTAG	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.