RLG00000003098

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0008718
Physical Location & Seq
Reverse (-)
44387671 .. 44390999
3329 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003098

Sequence Viewer

Length: 561 bp
ATGATTGAGGATCTGCTTCCATTTCCCTTAAAGGAGTTCCGGTTTGATGGCAAATGTATGAACAGTATTCAAACACAGAATAGTATTACAATGAAGCCTATTGATCAAAGAGAGCGCACCAGGGGTCGTAATGACATTCTCACTCGTCGCTTGAAGAACCGAGAAAGACAACGTAGATATAGGGCCCGGAAGCGTCTTGAAGCAGAATTGAAAAATTCCAGCATTATAAAGCCCTCAACTTCACCAGATGTAGAAGTGCAATTTAATGAAACTGTTAGCAATTACACACCCCGTGTGCACTGCAAACGGAATTGGAAAAAGGATGCAAGGAGAGCTCATGTTTCTAAGAATCCTGAAGTTACAGCGAATGCTTATGCTGTCCCTACTTTGATGGCAACCAGTGAAAGTCAAACTGTGTTCGTGTCTGGAACTACAGCAGAACCAAAATTTGAGAGTGAAACGTATTCAGAGGTACCTGTTGACCAAAATAACTGTGAAATGAATAGACCTAAACTGGGGAGAAGAGATTGGAAAGCTGATGCAAGAAAGAAGAAAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

187

Amino Acids

21.77

Weight (kDa)

10.04

Isoelectric Point (pI)

45.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 227
Acc65I GGTACC 1 cut(s) 472
AccB1I GGYRCC 1 cut(s) 472
AclWI GGATC 1 cut(s) 18
AcsI RAATTY 2 cut(s) 214, 446
AcuI CTGAAG 1 cut(s) 375
AdeI CACNNNGTG 1 cut(s) 293
AfaI GTAC 1 cut(s) 474
AfiI CCNNNNNNNGG 1 cut(s) 515
AgsI TTSAA 4 cut(s) 71, 154, 200, 211
AjnI CCWGG 1 cut(s) 119
AluBI AGCT 2 cut(s) 335, 536
AluI AGCT 2 cut(s) 335, 536
Alw21I GWGCWC 2 cut(s) 300, 337
Alw44I GTGCAC 1 cut(s) 296
AlwI GGATC 1 cut(s) 18
AoxI GGCC 1 cut(s) 183
ApaI GGGCCC 1 cut(s) 187
ApaLI GTGCAC 1 cut(s) 296
ApoI RAATTY 2 cut(s) 214, 446
Asp718I GGTACC 1 cut(s) 472
AspLEI GCGC 1 cut(s) 117
AspS9I GGNCC 2 cut(s) 183, 184
AsuC2I CCSGG 1 cut(s) 187
AsuHPI GGTGA 1 cut(s) 234
BaeGI GKGCMC 2 cut(s) 187, 300
BanI GGYRCC 1 cut(s) 472
BanII GRGCYC 2 cut(s) 187, 337
Bbv12I GWGCWC 2 cut(s) 300, 337
BccI CCATC 2 cut(s) 41, 385
BciT130I CCWGG 1 cut(s) 121
BclI TGATCA 1 cut(s) 103
BcnI CCSGG 1 cut(s) 187
BfmI CTRYAG 1 cut(s) 432
Bme1390I CCNGG 2 cut(s) 121, 187
BmgT120I GGNCC 2 cut(s) 183, 184
BmiI GGNNCC 2 cut(s) 185, 474
BmrFI CCNGG 2 cut(s) 121, 187
BmrI ACTGGG 1 cut(s) 524
BmsI GCATC 2 cut(s) 313, 529
BmuI ACTGGG 1 cut(s) 524
BpuMI CCSGG 1 cut(s) 187
BsaJI CCNNGG 1 cut(s) 120
BsaWI WCCGGW 1 cut(s) 39
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bsc4I CCNNNNNNNGG 1 cut(s) 515
Bse1I ACTGG 2 cut(s) 399, 519
BseBI CCWGG 1 cut(s) 121
BseDI CCNNGG 1 cut(s) 120
BseGI GGATG 1 cut(s) 328
BseLI CCNNNNNNNGG 1 cut(s) 515
BseNI ACTGG 2 cut(s) 399, 519
BseSI GKGCMC 2 cut(s) 187, 300
BshFI GGCC 1 cut(s) 185
BshNI GGYRCC 1 cut(s) 472
BsiHKAI GWGCWC 2 cut(s) 300, 337
BsiSI CCGG 2 cut(s) 40, 187
BslFI GGGAC 1 cut(s) 365
BslI CCNNNNNNNGG 1 cut(s) 515
BsmFI GGGAC 1 cut(s) 365
BsmI GAATGC 1 cut(s) 373
BsnI GGCC 1 cut(s) 185
Bsp120I GGGCCC 1 cut(s) 183
Bsp1286I GDGCHC 3 cut(s) 187, 300, 337
Bsp143I GATC 2 cut(s) 10, 103
BspANI GGCC 1 cut(s) 185
BspLI GGNNCC 2 cut(s) 185, 474
BspPI GGATC 1 cut(s) 18
BspT107I GGYRCC 1 cut(s) 472
BsrI ACTGG 2 cut(s) 399, 519
BssECI CCNNGG 1 cut(s) 120
BssMI GATC 2 cut(s) 10, 103
Bst2UI CCWGG 1 cut(s) 121
Bst4CI ACNGT 4 cut(s) 65, 274, 415, 494
Bst6I CTCTTC 1 cut(s) 517
BstDEI CTNAG 1 cut(s) 345
BstF5I GGATG 1 cut(s) 328
BstHHI GCGC 1 cut(s) 117
BstKTI GATC 2 cut(s) 13, 106
BstMBI GATC 2 cut(s) 10, 103
BstMWI GCNNNNNNNGC 1 cut(s) 332
BstNI CCWGG 1 cut(s) 121
BstSCI CCNGG 2 cut(s) 119, 185
BstSFI CTRYAG 1 cut(s) 432
BstSLI GKGCMC 2 cut(s) 187, 300
BstX2I RGATCY 1 cut(s) 10
BstYI RGATCY 1 cut(s) 10
BsuRI GGCC 1 cut(s) 185
BtsCI GGATG 1 cut(s) 328
BtsI GCAGTG 1 cut(s) 298
BtsIMutI CAGTG 2 cut(s) 298, 406
CfoI GCGC 1 cut(s) 117
Cfr13I GGNCC 2 cut(s) 183, 184
CseI GACGC 1 cut(s) 182
Csp6I GTAC 1 cut(s) 473
CviAII CATG 1 cut(s) 338
CviJI RGCY 5 cut(s) 97, 185, 232, 335, 536
CviKI_1 RGCY 5 cut(s) 97, 185, 232, 335, 536
CviQI GTAC 1 cut(s) 473
DdeI CTNAG 1 cut(s) 345
DpnI GATC 2 cut(s) 12, 105
DpnII GATC 2 cut(s) 10, 103
DraIII CACNNNGTG 1 cut(s) 293
Eam1104I CTCTTC 1 cut(s) 517
EarI CTCTTC 1 cut(s) 517
Ecl136II GAGCTC 1 cut(s) 335
Eco24I GRGCYC 2 cut(s) 187, 337
Eco53kI GAGCTC 1 cut(s) 335
Eco57I CTGAAG 1 cut(s) 375
EcoICRI GAGCTC 1 cut(s) 335
EcoO109I RGGNCCY 1 cut(s) 183
EcoRII CCWGG 1 cut(s) 119
EcoT38I GRGCYC 2 cut(s) 187, 337
FaeI CATG 1 cut(s) 341
FaiI YATR 5 cut(s) 59, 180, 227, 339, 375
FaqI GGGAC 1 cut(s) 365
FatI CATG 1 cut(s) 337
FbaI TGATCA 1 cut(s) 103
FokI GGATG 1 cut(s) 335
FriOI GRGCYC 2 cut(s) 187, 337
GlaI GCGC 1 cut(s) 116
HaeIII GGCC 1 cut(s) 185
HapII CCGG 2 cut(s) 40, 187
HgaI GACGC 1 cut(s) 182
HhaI GCGC 1 cut(s) 117
Hin1II CATG 1 cut(s) 341
Hin6I GCGC 1 cut(s) 115
HinP1I GCGC 1 cut(s) 115
HincII GTYRAC 1 cut(s) 481
HindII GTYRAC 1 cut(s) 481
HinfI GANTC 1 cut(s) 349
HpaII CCGG 2 cut(s) 40, 187
HphI GGTGA 1 cut(s) 234
Hpy166II GTNNAC 2 cut(s) 298, 481
Hpy188I TCNGA 1 cut(s) 469
Hpy188III TCNNGA 3 cut(s) 197, 353, 426
Hpy8I GTNNAC 2 cut(s) 298, 481
Hpy99I CGWCG 1 cut(s) 150
HpyCH4III ACNGT 4 cut(s) 65, 274, 415, 494
HpyCH4IV ACGT 2 cut(s) 172, 461
HpyCH4V TGCA 5 cut(s) 259, 298, 303, 326, 542
HpyF10VI GCNNNNNNNGC 1 cut(s) 332
HpyF3I CTNAG 1 cut(s) 345
HpySE526I ACGT 2 cut(s) 172, 461
Hsp92II CATG 1 cut(s) 341
HspAI GCGC 1 cut(s) 115
KpnI GGTACC 1 cut(s) 476
Ksp22I TGATCA 1 cut(s) 103
Kzo9I GATC 2 cut(s) 10, 103
LweI GCATC 2 cut(s) 313, 529
MaeII ACGT 2 cut(s) 172, 461
MaeIII GTNAC 1 cut(s) 358
MalI GATC 2 cut(s) 12, 105
MboI GATC 2 cut(s) 10, 103
MboII GAAGA 2 cut(s) 166, 534
MflI RGATCY 1 cut(s) 10
MhlI GDGCHC 3 cut(s) 187, 300, 337
MluCI AATT 6 cut(s) 206, 214, 260, 280, 310, 446
MnlI CCTC 2 cut(s) 244, 463
MseI TTAA 2 cut(s) 29, 264
MspI CCGG 2 cut(s) 40, 187
MspR9I CCNGG 2 cut(s) 121, 187
Mva1269I GAATGC 1 cut(s) 373
MvaI CCWGG 1 cut(s) 121
MwoI GCNNNNNNNGC 1 cut(s) 332
NciI CCSGG 1 cut(s) 187
NdeII GATC 2 cut(s) 10, 103
NlaIII CATG 1 cut(s) 341
NlaIV GGNNCC 2 cut(s) 185, 474
PctI GAATGC 1 cut(s) 373
PfeI GAWTC 1 cut(s) 349
PsiI TTATAA 1 cut(s) 227
Psp124BI GAGCTC 1 cut(s) 337
Psp6I CCWGG 1 cut(s) 119
PspGI CCWGG 1 cut(s) 119
PspN4I GGNNCC 2 cut(s) 185, 474
PspOMI GGGCCC 1 cut(s) 183
PspPI GGNCC 2 cut(s) 183, 184
PsuI RGATCY 1 cut(s) 10
RsaI GTAC 1 cut(s) 474
RsaNI GTAC 1 cut(s) 473
SacI GAGCTC 1 cut(s) 337
SaqAI TTAA 2 cut(s) 29, 264
Sau3AI GATC 2 cut(s) 10, 103
Sau96I GGNCC 2 cut(s) 183, 184
ScrFI CCNGG 2 cut(s) 121, 187
SduI GDGCHC 3 cut(s) 187, 300, 337
SetI ASST 7 cut(s) 175, 337, 464, 474, 478, 511, 538
SfaNI GCATC 2 cut(s) 313, 529
SfcI CTRYAG 1 cut(s) 432
Sse9I AATT 6 cut(s) 206, 214, 260, 280, 310, 446
SstI GAGCTC 1 cut(s) 337
StyD4I CCNGG 2 cut(s) 119, 185
TaaI ACNGT 4 cut(s) 65, 274, 415, 494
TaiI ACGT 2 cut(s) 175, 464
TasI AATT 6 cut(s) 206, 214, 260, 280, 310, 446
TfiI GAWTC 1 cut(s) 349
Tru1I TTAA 2 cut(s) 29, 264
Tru9I TTAA 2 cut(s) 29, 264
TscAI CASTG 2 cut(s) 305, 406
TspDTI ATGAA 4 cut(s) 74, 107, 282, 515
TspGWI ACGGA 1 cut(s) 322
TspRI CASTG 2 cut(s) 305, 406
VneI GTGCAC 1 cut(s) 296
XapI RAATTY 2 cut(s) 214, 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.