Rorug07G0115800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0008718
Physical Location & Seq
Reverse (-)
9022079 .. 9023897
1819 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0115800.1

Sequence Viewer

Length: 1185 bp
ATGATTGACCCTTCGATGATTTATAGATTTTACGATGATCTACATAGCTACCTTGCAAATTGCAATATAGACGGAGTGAAGGTGGATATACACAATGAAGTGGAACTCCTTGCTTCTGGTTATGGAGGCCAGGTTGCATTGATGAGGCATTTCCAAGAAGCCCTCGAGGAATCTGTCATGAGAAACTTTGGCAGCAATAACCTTATTTGTTCCATGAGTCTAAGCAATGACTACATTTACAGCTCAAAGAAGAGTGCAGCTTCAAGAGTGTCAGAGGACTTCATGCCACTAGAGAAAACATTTCAGACCCTACAAGTTGCTGCAGTAGCTTTTAACAGTCTTCTTATGGGAGAGATTGTTGTACCAGATTGGGACATGTTCTTTAGCGACCACTACACCCGGGAGTTCCATGCTGCAGCCAGAGCATTGGGTGGATGTCCAGTATATGTAAGTGACAAGCCTGGCAGCCATAATTTCAATGTCCTCAAAAAGCTTGTACTGCCTGATGGCTCTATTCTGAGAGCTAGATTCGCTGGCCGGCCTACTAGGGACTGCTTATTCAGTGACCCTGTGGTCGATGGAAAAAGTCTGCTGAAGATTTGGAATCTAAACAAGGTATCAGGAGTTATTGGTGTTTTCAATTGCCAAAGAGCCGGAAAGTGGCCACCAATTGAAGGTGCTCAATATGTGCCTCCCTCCGAATCTGCACCGCCTCTTATAGGCCTTGTCAGCCCCATAGATATTAATATGCTTGAAGATGTTGCAAATGAAAGTTGGGGAGGAGGATGTGCAGTATATGCATACCATTCAGGTACTCTTTCTGTAATGCCAAAGAAAGACCATTTTGAAGTATCCTTGGATGTGCTAGAATGTGAAGTTTTCACCATATCTCCTATTATGGTTTTTGGTGACAACCTTCAATTTGCCCCAATAGGGTTGCTTGATATGTACAATTCAGGAGGAGCACTTGAATCTCTAGATGTCAGCAACAATGATCTGTTCGACTGTGTTGTGAAGGTTCGAGTCAGAGGATGTGGTCGATTTGGAGCCTACTCAAACAAAAAACCAAAGTCTTGTCTGGTGGACAAGAAAGAGGAGTTTATAGTCTACAATGCTAATAATGGTTTGTTGGTACTTAAACTTCAAGGCGATTGCAAAGTAAAAGAGATTGAGTTCATGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

394

Amino Acids

43.62

Weight (kDa)

5.26

Isoelectric Point (pI)

38.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Raffinose_syn PF05691 2 - 380 3.8e-134 Raffinose synthase or seed imbibition protein Sip1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 572
AbsI CCTCGAGG 1 cut(s) 164
AccI GTMKAC 1 cut(s) 1107
AciI CCGC 1 cut(s) 710
AcoI YGGCCR 2 cut(s) 535, 662
AcuI CTGAAG 1 cut(s) 614
AfaI GTAC 6 cut(s) 363, 498, 814, 950, 1134, 1181
AfiI CCNNNNNNNGG 4 cut(s) 660, 674, 719, 933
AflIII ACRYGT 1 cut(s) 375
AgsI TTSAA 9 cut(s) 264, 478, 640, 674, 755, 848, 920, 971, 1145
AjnI CCWGG 2 cut(s) 129, 460
AluBI AGCT 6 cut(s) 48, 243, 260, 329, 493, 524
AluI AGCT 6 cut(s) 48, 243, 260, 329, 493, 524
Alw21I GWGCWC 2 cut(s) 682, 967
Ama87I CYCGRG 2 cut(s) 164, 399
AoxI GGCC 5 cut(s) 127, 535, 539, 662, 721
ApeKI GCWGC 6 cut(s) 192, 257, 320, 413, 416, 465
AseI ATTAAT 1 cut(s) 744
AsuC2I CCSGG 2 cut(s) 400, 401
AsuHPI GGTGA 2 cut(s) 874, 920
AvaI CYCGRG 2 cut(s) 164, 399
BalI TGGCCA 1 cut(s) 664
BarI GAAGNNNNNNTAC 2 cut(s) 1125, 1157
BbsI GAAGAC 1 cut(s) 332
Bbv12I GWGCWC 2 cut(s) 682, 967
BbvI GCAGC 6 cut(s) 204, 269, 307, 400, 428, 477
BccI CCATC 2 cut(s) 500, 572
BciT130I CCWGG 2 cut(s) 131, 462
BciVI GTATCC 1 cut(s) 862
BcnI CCSGG 2 cut(s) 400, 401
BfaI CTAG 5 cut(s) 290, 525, 546, 866, 977
BfmI CTRYAG 2 cut(s) 321, 414
BfuI GTATCC 1 cut(s) 862
BisI GCNGC 6 cut(s) 193, 258, 321, 414, 417, 466
BlsI GCNGC 6 cut(s) 194, 259, 322, 415, 418, 467
Bme1390I CCNGG 4 cut(s) 131, 400, 401, 462
BmeT110I CYCGRG 2 cut(s) 164, 399
BmiI GGNNCC 1 cut(s) 1048
BmrFI CCNGG 4 cut(s) 131, 400, 401, 462
BpiI GAAGAC 1 cut(s) 332
BpuMI CCSGG 2 cut(s) 400, 401
BsaJI CCNNGG 2 cut(s) 399, 855
BsaXI ACNNNNNCTCC 8 cut(s) 66, 96, 117, 147, 342, 372, 874, 904
Bsc4I CCNNNNNNNGG 4 cut(s) 660, 674, 719, 933
Bse118I RCCGGY 1 cut(s) 537
Bse1I ACTGG 1 cut(s) 440
Bse3DI GCAATG 1 cut(s) 232
BseBI CCWGG 2 cut(s) 131, 462
BseDI CCNNGG 2 cut(s) 399, 855
BseGI GGATG 4 cut(s) 440, 791, 865, 1037
BseLI CCNNNNNNNGG 4 cut(s) 660, 674, 719, 933
BseMI GCAATG 1 cut(s) 232
BseMII CTCAG 1 cut(s) 509
BseNI ACTGG 1 cut(s) 440
BseRI GAGGAG 3 cut(s) 795, 975, 1109
BseXI GCAGC 6 cut(s) 204, 269, 307, 400, 428, 477
BsgI GTGCAG 3 cut(s) 276, 690, 810
BshFI GGCC 5 cut(s) 129, 537, 541, 664, 723
BsiHKAI GWGCWC 2 cut(s) 682, 967
BsiHKCI CYCGRG 2 cut(s) 164, 399
BsiSI CCGG 3 cut(s) 400, 538, 654
BslFI GGGAC 2 cut(s) 386, 563
BslI CCNNNNNNNGG 4 cut(s) 660, 674, 719, 933
BsmFI GGGAC 2 cut(s) 386, 563
BsnI GGCC 5 cut(s) 129, 537, 541, 664, 723
BsoBI CYCGRG 2 cut(s) 164, 399
Bsp1286I GDGCHC 2 cut(s) 682, 967
Bsp1407I TGTACA 1 cut(s) 948
Bsp143I GATC 2 cut(s) 37, 994
BspACI CCGC 1 cut(s) 710
BspANI GGCC 5 cut(s) 129, 537, 541, 664, 723
BspCNI CTCAG 1 cut(s) 510
BspHI TCATGA 1 cut(s) 177
BspLI GGNNCC 1 cut(s) 1048
BspMAI CTGCAG 2 cut(s) 325, 418
BsrDI GCAATG 1 cut(s) 232
BsrFI RCCGGY 1 cut(s) 537
BsrGI TGTACA 1 cut(s) 948
BsrI ACTGG 1 cut(s) 440
BssAI RCCGGY 1 cut(s) 537
BssECI CCNNGG 2 cut(s) 399, 855
BssMI GATC 2 cut(s) 37, 994
BssT1I CCWWGG 1 cut(s) 855
Bst2UI CCWGG 2 cut(s) 131, 462
Bst4CI ACNGT 2 cut(s) 338, 1007
Bst6I CTCTTC 1 cut(s) 245
BstAPI GCANNNNNTGC 1 cut(s) 797
BstAUI TGTACA 1 cut(s) 948
BstC8I GCNNGC 2 cut(s) 535, 539
BstDEI CTNAG 2 cut(s) 221, 518
BstENI CCTNNNNNAGG 1 cut(s) 717
BstF5I GGATG 4 cut(s) 440, 791, 865, 1037
BstKTI GATC 2 cut(s) 40, 997
BstMBI GATC 2 cut(s) 37, 994
BstMWI GCNNNNNNNGC 6 cut(s) 326, 422, 499, 530, 729, 797
BstNI CCWGG 2 cut(s) 131, 462
BstNSI RCATGY 1 cut(s) 379
BstSCI CCNGG 4 cut(s) 129, 398, 399, 460
BstSFI CTRYAG 2 cut(s) 321, 414
BstV1I GCAGC 6 cut(s) 204, 269, 307, 400, 428, 477
BstV2I GAAGAC 1 cut(s) 332
BstXI CCANNNNNNTGG 1 cut(s) 427
BsuI GTATCC 1 cut(s) 862
BsuRI GGCC 5 cut(s) 129, 537, 541, 664, 723
BtsCI GGATG 4 cut(s) 440, 791, 865, 1037
BtsIMutI CAGTG 1 cut(s) 568
Cac8I GCNNGC 2 cut(s) 535, 539
CciI TCATGA 1 cut(s) 177
Cfr10I RCCGGY 1 cut(s) 537
Cfr9I CCCGGG 1 cut(s) 399
Csp6I GTAC 6 cut(s) 362, 497, 813, 949, 1133, 1180
CviAII CATG 6 cut(s) 178, 214, 283, 376, 410, 1177
CviQI GTAC 6 cut(s) 362, 497, 813, 949, 1133, 1180
DdeI CTNAG 2 cut(s) 221, 518
DpnI GATC 2 cut(s) 39, 996
DpnII GATC 2 cut(s) 37, 994
DrdI GACNNNNNNGTC 1 cut(s) 572
DseDI GACNNNNNNGTC 1 cut(s) 572
EaeI YGGCCR 2 cut(s) 535, 662
Eam1104I CTCTTC 1 cut(s) 245
EarI CTCTTC 1 cut(s) 245
Eco130I CCWWGG 1 cut(s) 855
Eco147I AGGCCT 1 cut(s) 723
Eco57I CTGAAG 1 cut(s) 614
Eco88I CYCGRG 2 cut(s) 164, 399
EcoNI CCTNNNNNAGG 1 cut(s) 717
EcoRII CCWGG 2 cut(s) 129, 460
EcoT14I CCWWGG 1 cut(s) 855
EcoT22I ATGCAT 1 cut(s) 802
ErhI CCWWGG 1 cut(s) 855
FaeI CATG 6 cut(s) 181, 217, 286, 379, 413, 1180
FaqI GGGAC 2 cut(s) 386, 563
FatI CATG 6 cut(s) 177, 213, 282, 375, 409, 1176
FblI GTMKAC 1 cut(s) 1107
Fnu4HI GCNGC 6 cut(s) 193, 258, 321, 414, 417, 466
FokI GGATG 4 cut(s) 447, 798, 872, 1044
FseI GGCCGGCC 1 cut(s) 541
Fsp4HI GCNGC 6 cut(s) 193, 258, 321, 414, 417, 466
FspBI CTAG 5 cut(s) 290, 525, 546, 866, 977
GluI GCNGC 6 cut(s) 193, 258, 321, 414, 417, 466
HaeIII GGCC 5 cut(s) 129, 537, 541, 664, 723
HapII CCGG 3 cut(s) 400, 538, 654
Hin1II CATG 6 cut(s) 181, 217, 286, 379, 413, 1180
HindIII AAGCTT 1 cut(s) 491
HinfI GANTC 7 cut(s) 170, 217, 528, 604, 701, 971, 1023
HpaII CCGG 3 cut(s) 400, 538, 654
HphI GGTGA 2 cut(s) 874, 920
Hpy166II GTNNAC 2 cut(s) 1084, 1108
Hpy188I TCNGA 5 cut(s) 274, 306, 519, 700, 1028
Hpy188III TCNNGA 5 cut(s) 178, 264, 621, 957, 977
Hpy8I GTNNAC 2 cut(s) 1084, 1108
HpyAV CCTTC 5 cut(s) 21, 73, 668, 926, 1009
HpyCH4III ACNGT 2 cut(s) 338, 1007
HpyF10VI GCNNNNNNNGC 6 cut(s) 326, 422, 499, 530, 729, 797
HpyF3I CTNAG 2 cut(s) 221, 518
Hsp92II CATG 6 cut(s) 181, 217, 286, 379, 413, 1180
KroI GCCGGC 1 cut(s) 537
KroNI GCCGGC 1 cut(s) 539
Kzo9I GATC 2 cut(s) 37, 994
LmnI GCTCC 2 cut(s) 962, 1046
Lsp1109I GCAGC 6 cut(s) 204, 269, 307, 400, 428, 477
MaeI CTAG 5 cut(s) 290, 525, 546, 866, 977
MaeIII GTNAC 3 cut(s) 452, 563, 908
MalI GATC 2 cut(s) 39, 996
MboI GATC 2 cut(s) 37, 994
MboII GAAGA 4 cut(s) 262, 332, 607, 767
MfeI CAATTG 2 cut(s) 640, 669
MhlI GDGCHC 2 cut(s) 682, 967
MlsI TGGCCA 1 cut(s) 664
MluCI AATT 6 cut(s) 58, 472, 640, 669, 920, 952
MluNI TGGCCA 1 cut(s) 664
MlyI GAGTC 2 cut(s) 226, 1032
Mox20I TGGCCA 1 cut(s) 664
Mph1103I ATGCAT 1 cut(s) 802
MroNI GCCGGC 1 cut(s) 537
MscI TGGCCA 1 cut(s) 664
MseI TTAA 3 cut(s) 333, 744, 1137
Msp20I TGGCCA 1 cut(s) 664
MspI CCGG 3 cut(s) 400, 538, 654
MspR9I CCNGG 4 cut(s) 131, 400, 401, 462
MunI CAATTG 2 cut(s) 640, 669
MvaI CCWGG 2 cut(s) 131, 462
MwoI GCNNNNNNNGC 6 cut(s) 326, 422, 499, 530, 729, 797
NaeI GCCGGC 1 cut(s) 539
NciI CCSGG 2 cut(s) 400, 401
NdeII GATC 2 cut(s) 37, 994
NgoMIV GCCGGC 1 cut(s) 537
NlaIII CATG 6 cut(s) 181, 217, 286, 379, 413, 1180
NlaIV GGNNCC 1 cut(s) 1048
NmuCI GTSAC 3 cut(s) 452, 563, 908
NsiI ATGCAT 1 cut(s) 802
NspI RCATGY 1 cut(s) 379
PaeR7I CTCGAG 1 cut(s) 164
PagI TCATGA 1 cut(s) 177
PceI AGGCCT 1 cut(s) 723
PciI ACATGT 1 cut(s) 375
PdiI GCCGGC 1 cut(s) 539
PfeI GAWTC 5 cut(s) 170, 528, 604, 701, 971
PkrI GCNGC 6 cut(s) 194, 259, 322, 415, 418, 467
PleI GAGTC 2 cut(s) 225, 1031
PpsI GAGTC 2 cut(s) 225, 1031
PscI ACATGT 1 cut(s) 375
PshBI ATTAAT 1 cut(s) 744
Psp6I CCWGG 2 cut(s) 129, 460
PspGI CCWGG 2 cut(s) 129, 460
PspN4I GGNNCC 1 cut(s) 1048
PspXI VCTCGAGB 1 cut(s) 164
PstI CTGCAG 2 cut(s) 325, 418
RigI GGCCGGCC 1 cut(s) 541
RsaI GTAC 6 cut(s) 363, 498, 814, 950, 1134, 1181
RsaNI GTAC 6 cut(s) 362, 497, 813, 949, 1133, 1180
SaqAI TTAA 3 cut(s) 333, 744, 1137
SatI GCNGC 6 cut(s) 193, 258, 321, 414, 417, 466
Sau3AI GATC 2 cut(s) 37, 994
SchI GAGTC 2 cut(s) 226, 1032
ScrFI CCNGG 4 cut(s) 131, 400, 401, 462
SduI GDGCHC 2 cut(s) 682, 967
SfcI CTRYAG 2 cut(s) 321, 414
Sfr274I CTCGAG 1 cut(s) 164
SlaI CTCGAG 1 cut(s) 164
SmaI CCCGGG 1 cut(s) 401
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
Sse9I AATT 6 cut(s) 58, 472, 640, 669, 920, 952
SseBI AGGCCT 1 cut(s) 723
SsiI CCGC 1 cut(s) 710
SspMI CTAG 5 cut(s) 290, 525, 546, 866, 977
StuI AGGCCT 1 cut(s) 723
StyD4I CCNGG 4 cut(s) 129, 398, 399, 460
StyI CCWWGG 1 cut(s) 855
TaaI ACNGT 2 cut(s) 338, 1007
TaqI TCGA 6 cut(s) 14, 165, 576, 1002, 1021, 1039
TasI AATT 6 cut(s) 58, 472, 640, 669, 920, 952
TatI WGTACW 3 cut(s) 496, 948, 1179
TfiI GAWTC 5 cut(s) 170, 528, 604, 701, 971
Tru1I TTAA 3 cut(s) 333, 744, 1137
Tru9I TTAA 3 cut(s) 333, 744, 1137
TscAI CASTG 1 cut(s) 568
TseFI GTSAC 3 cut(s) 452, 563, 908
TseI GCWGC 6 cut(s) 192, 257, 320, 413, 416, 465
Tsp45I GTSAC 3 cut(s) 452, 563, 908
TspDTI ATGAA 4 cut(s) 111, 271, 783, 1165
TspGWI ACGGA 1 cut(s) 87
TspMI CCCGGG 1 cut(s) 399
TspRI CASTG 1 cut(s) 568
VspI ATTAAT 1 cut(s) 744
XagI CCTNNNNNAGG 1 cut(s) 717
XbaI TCTAGA 1 cut(s) 976
XceI RCATGY 1 cut(s) 379
XhoI CTCGAG 1 cut(s) 164
XmaI CCCGGG 1 cut(s) 399
XmiI GTMKAC 1 cut(s) 1107
XspI CTAG 5 cut(s) 290, 525, 546, 866, 977
Zsp2I ATGCAT 1 cut(s) 802
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.