AT1G33590

BEST Arabidopsis thaliana protein match is Leucine-rich repeat (LRR) family protein (TAIR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0005729
Physical Location & Seq
Forward (+)
12177673 .. 12179628
1956 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G33590.2

Sequence Viewer

Length: 1434 bp
ATGAACTCTTCCTTTACTCTCTTCATCTTTACCTTCGTCATCTTCCTCCAATGTCTAAATCCCACCGGAGCTGCCACGTGTCATCCTGATGATGAAGCGGGTCTTCTAGCTTTCAAAGCGGGTATAACCCGAGATCCTTCGGGTATTCTCAGTTCTTGGAAGAAAGGTACCGCTTGTTGTTCTTGGAACGGTGTCACTTGTCTCACCACTGACCGTGTCTCTGCACTCTCTGTCGCTGGACAAGCCGATGTTGCTGGAAGCTTCCTCTCCGGCACTCTCTCGCCGTCGTTGGCTAAACTCAAGCACCTTGATGGGATTTACTTCACCGATCTCAAGAACATCACTGGTTCTTTTCCTCAATTCCTTTTCCAATTACCAAATCTTAAGTACGTATACATTGAGAATAACCGTCTCTCTGGTACTCTTCCGGCTAACATCGGTGCGCTAAGCCAGCTTGAAGCGTTCAGCCTCGAGGGAAACCGGTTCACCGGTCCGATCCCGAGCTCGATATCTAATTTGACTCTGTTAACTCAACTCAAACTCGGCAATAATCTCCTAACCGGAACTATACCGTTAGGGGTCGCTAATCTCAAGCTCATGTCGTATCTCAACCTTGGAGGTAACCGTCTCACTGGAACCATTCCAGATATTTTCAAATCCATGCCAGAGCTCCGATCTTTAACTCTCTCCCGCAACGGATTCTCCGGGAATCTTCCTCCGTCCATTGCATCACTCGCACCGATTCTTAGGTTCCTCGAGTTAGGCCATAACAAACTCTCCGGGACGATTCCAAACTTTTTATCAAACTTCAAGGCGCTCGACACATTGGATCTCTCCAAGAATCGGTTCTCGGGTGTCATACCGAAGAGTTTCGCCAATCTGACCAAGATATTCAATCTTGATCTCTCCCATAATCTTCTAACCGATCCATTCCCTGTCTTGAACGTTAAAGGCATTGAATCTTTGGATCTTTCTTACAACCAGTTTCACTTGAATACGATCCCGAAATGGGTGACTTCGTCGCCGATCATCTTCTCGTTGAAGCTAGCAAAATGCGGGATCAAGATGAGCTTAGACGATTGGAAGCCAGCGCAAACATTCTACTATGATTTCATCGATCTGTCGGAAAACGAGATCACAGGGAGTCCAGCAAGGTTCTTGAACCAAACAGAGTATCTAGTGGAGTTCAAGGCAGCGGGTAACAAACTACGATTCGATATGGGGAAGCTAACGTTTGCAAAGACGCTGACAACTTTAGATATATCAAGGAACTTGGTATTTGGGAAGGTGCCGGCAATGGTGGCTGGACTAAAGACATTGAACGTGAGTCACAACCATCTTTGTGGAAAGCTTCCAGTAACAAAGTTCCCGGCCAGTGCGTTTGTGGGTAATGACTGTCTTTGCGGCTCTCCTCTTTCTCCTTGTAAAGCTTAA

Protein Analysis

477

Amino Acids

51.74

Weight (kDa)

9.11

Isoelectric Point (pI)

33.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 65 - 104 2.2e-14 Leucine rich repeat N-terminal domain
LRR_14 PF23598 132 - 266 2.3e-08 Leucine-rich repeat region
LRR_8 PF13855 163 - 223 6.4e-06 Leucine rich repeat
LRR_8 PF13855 213 - 270 1.1e-06 Leucine rich repeat
LRR_8 PF13855 286 - 344 4.8e-09 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 470
Acc65I GGTACC 1 cut(s) 167
AccB1I GGYRCC 2 cut(s) 167, 1288
AccI GTMKAC 1 cut(s) 393
AciI CCGC 7 cut(s) 98, 119, 171, 691, 1056, 1196, 1404
AclI AACGTT 2 cut(s) 945, 1232
AclWI GGATC 7 cut(s) 128, 490, 837, 920, 975, 994, 1067
AcoI YGGCCR 1 cut(s) 1371
AcvI CACGTG 1 cut(s) 78
AfaI GTAC 3 cut(s) 169, 389, 421
AfiI CCNNNNNNNGG 2 cut(s) 843, 1009
AflII CTTAAG 1 cut(s) 383
AflIII ACRYGT 1 cut(s) 77
AgeI ACCGGT 2 cut(s) 480, 488
AjuI GAANNNNNNNTTGG 2 cut(s) 830, 862
Alw21I GWGCWC 2 cut(s) 506, 672
Alw26I GTCTC 4 cut(s) 206, 223, 416, 632
AlwI GGATC 7 cut(s) 128, 490, 837, 920, 975, 994, 1067
Ama87I CYCGRG 5 cut(s) 129, 470, 499, 755, 850
AoxI GGCC 2 cut(s) 763, 1371
ApeKI GCWGC 2 cut(s) 71, 1193
AsiGI ACCGGT 2 cut(s) 480, 488
Asp700I GAANNNNTTC 2 cut(s) 845, 869
Asp718I GGTACC 1 cut(s) 167
AspLEI GCGC 3 cut(s) 445, 817, 1093
AspS9I GGNCC 1 cut(s) 491
AsuC2I CCSGG 3 cut(s) 706, 781, 1370
AsuHPI GGTGA 4 cut(s) 196, 316, 478, 1024
AsuNHI GCTAGC 1 cut(s) 1045
AvaI CYCGRG 5 cut(s) 129, 470, 499, 755, 850
AvaII GGWCC 1 cut(s) 491
BanI GGYRCC 2 cut(s) 167, 1288
BanII GRGCYC 2 cut(s) 506, 672
BbrPI CACGTG 1 cut(s) 78
BbsI GAAGAC 1 cut(s) 95
Bbv12I GWGCWC 2 cut(s) 506, 672
BbvI GCAGC 2 cut(s) 58, 1205
BccI CCATC 2 cut(s) 305, 1344
BceAI ACGGC 1 cut(s) 268
BcnI CCSGG 3 cut(s) 706, 781, 1370
BcoDI GTCTC 4 cut(s) 206, 223, 416, 632
BfaI CTAG 3 cut(s) 107, 1046, 1178
BfoI RGCGCY 1 cut(s) 818
BfrI CTTAAG 1 cut(s) 383
BisI GCNGC 3 cut(s) 72, 1194, 1405
BlpI GCTNAGC 1 cut(s) 446
BlsI GCNGC 3 cut(s) 73, 1195, 1406
Bme1390I CCNGG 3 cut(s) 706, 781, 1370
Bme18I GGWCC 1 cut(s) 491
BmeT110I CYCGRG 5 cut(s) 129, 470, 499, 755, 850
BmgT120I GGNCC 1 cut(s) 491
BmiI GGNNCC 4 cut(s) 169, 637, 752, 1290
BmrFI CCNGG 3 cut(s) 706, 781, 1370
BmsI GCATC 1 cut(s) 737
BmtI GCTAGC 1 cut(s) 1049
BpiI GAAGAC 1 cut(s) 95
Bpu1102I GCTNAGC 1 cut(s) 446
BpuEI CTTGAG 3 cut(s) 284, 317, 575
BpuMI CCSGG 3 cut(s) 706, 781, 1370
Bsa29I ATCGAT 1 cut(s) 1116
BsaAI YACGTR 2 cut(s) 78, 391
BsaJI CCNNGG 1 cut(s) 613
BsaWI WCCGGW 4 cut(s) 65, 480, 488, 560
BsaXI ACNNNNNCTCC 4 cut(s) 686, 716, 761, 791
Bsc4I CCNNNNNNNGG 2 cut(s) 843, 1009
Bse118I RCCGGY 3 cut(s) 480, 488, 1291
Bse1I ACTGG 5 cut(s) 349, 637, 982, 1355, 1374
Bse3DI GCAATG 2 cut(s) 723, 1302
BseCI ATCGAT 1 cut(s) 1116
BseDI CCNNGG 1 cut(s) 613
BseGI GGATG 1 cut(s) 82
BseLI CCNNNNNNNGG 2 cut(s) 843, 1009
BseMI GCAATG 2 cut(s) 723, 1302
BseMII CTCAG 1 cut(s) 163
BseNI ACTGG 5 cut(s) 349, 637, 982, 1355, 1374
BseRI GAGGAG 1 cut(s) 1401
BseXI GCAGC 2 cut(s) 58, 1205
BsgI GTGCAG 1 cut(s) 207
BshFI GGCC 2 cut(s) 765, 1373
BshNI GGYRCC 2 cut(s) 167, 1288
BshTI ACCGGT 2 cut(s) 480, 488
BshVI ATCGAT 1 cut(s) 1116
BsiHKAI GWGCWC 2 cut(s) 506, 672
BsiHKCI CYCGRG 5 cut(s) 129, 470, 499, 755, 850
BslFI GGGAC 1 cut(s) 796
BslI CCNNNNNNNGG 2 cut(s) 843, 1009
BsmAI GTCTC 4 cut(s) 206, 223, 416, 632
BsmBI CGTCTC 2 cut(s) 416, 632
BsmFI GGGAC 1 cut(s) 796
BsnI GGCC 2 cut(s) 765, 1373
BsoBI CYCGRG 5 cut(s) 129, 470, 499, 755, 850
Bsp1286I GDGCHC 2 cut(s) 506, 672
Bsp1720I GCTNAGC 1 cut(s) 446
BspACI CCGC 7 cut(s) 98, 119, 171, 691, 1056, 1196, 1404
BspANI GGCC 2 cut(s) 765, 1373
BspCNI CTCAG 1 cut(s) 162
BspDI ATCGAT 1 cut(s) 1116
BspLI GGNNCC 4 cut(s) 169, 637, 752, 1290
BspOI GCTAGC 1 cut(s) 1049
BspPI GGATC 7 cut(s) 128, 490, 837, 920, 975, 994, 1067
BspT107I GGYRCC 2 cut(s) 167, 1288
BspTI CTTAAG 1 cut(s) 383
BsrDI GCAATG 2 cut(s) 723, 1302
BsrFI RCCGGY 3 cut(s) 480, 488, 1291
BsrI ACTGG 5 cut(s) 349, 637, 982, 1355, 1374
BssAI RCCGGY 3 cut(s) 480, 488, 1291
BssECI CCNNGG 1 cut(s) 613
BssNAI GTATAC 1 cut(s) 394
BssT1I CCWWGG 1 cut(s) 613
Bst1107I GTATAC 1 cut(s) 394
Bst4CI ACNGT 6 cut(s) 191, 215, 410, 573, 626, 1397
Bst6I CTCTTC 4 cut(s) 13, 26, 429, 860
BstAFI CTTAAG 1 cut(s) 383
BstBAI YACGTR 2 cut(s) 78, 391
BstC8I GCNNGC 4 cut(s) 452, 1047, 1089, 1293
BstDEI CTNAG 4 cut(s) 149, 446, 746, 1072
BstEII GGTNACC 1 cut(s) 620
BstF5I GGATG 1 cut(s) 82
BstH2I RGCGCY 1 cut(s) 818
BstHHI GCGC 3 cut(s) 445, 817, 1093
BstMAI GTCTC 4 cut(s) 206, 223, 416, 632
BstMWI GCNNNNNNNGC 6 cut(s) 116, 242, 251, 451, 734, 1301
BstPI GGTNACC 1 cut(s) 620
BstSCI CCNGG 3 cut(s) 704, 779, 1368
BstSNI TACGTA 1 cut(s) 391
BstV1I GCAGC 2 cut(s) 58, 1205
BstV2I GAAGAC 1 cut(s) 95
BstX2I RGATCY 3 cut(s) 133, 829, 967
BstXI CCANNNNNNTGG 1 cut(s) 1343
BstYI RGATCY 3 cut(s) 133, 829, 967
BstZ17I GTATAC 1 cut(s) 394
Bsu15I ATCGAT 1 cut(s) 1116
BsuRI GGCC 2 cut(s) 765, 1373
BsuTUI ATCGAT 1 cut(s) 1116
BtsCI GGATG 1 cut(s) 82
BtsIMutI CAGTG 4 cut(s) 207, 342, 630, 1381
Cac8I GCNNGC 4 cut(s) 452, 1047, 1089, 1293
CfoI GCGC 3 cut(s) 445, 817, 1093
Cfr10I RCCGGY 3 cut(s) 480, 488, 1291
Cfr13I GGNCC 1 cut(s) 491
ClaI ATCGAT 1 cut(s) 1116
CpoI CGGWCCG 1 cut(s) 491
CseI GACGC 1 cut(s) 1252
Csp6I GTAC 3 cut(s) 168, 388, 420
CspAI ACCGGT 2 cut(s) 480, 488
CspI CGGWCCG 1 cut(s) 491
CviAII CATG 2 cut(s) 598, 661
CviQI GTAC 3 cut(s) 168, 388, 420
DdeI CTNAG 4 cut(s) 149, 446, 746, 1072
EaeI YGGCCR 1 cut(s) 1371
Eam1104I CTCTTC 4 cut(s) 13, 26, 429, 860
EarI CTCTTC 4 cut(s) 13, 26, 429, 860
Ecl136II GAGCTC 2 cut(s) 504, 670
Eco105I TACGTA 1 cut(s) 391
Eco130I CCWWGG 1 cut(s) 613
Eco24I GRGCYC 2 cut(s) 506, 672
Eco32I GATATC 1 cut(s) 510
Eco47I GGWCC 1 cut(s) 491
Eco53kI GAGCTC 2 cut(s) 504, 670
Eco72I CACGTG 1 cut(s) 78
Eco88I CYCGRG 5 cut(s) 129, 470, 499, 755, 850
Eco91I GGTNACC 1 cut(s) 620
EcoICRI GAGCTC 2 cut(s) 504, 670
EcoO65I GGTNACC 1 cut(s) 620
EcoRV GATATC 1 cut(s) 510
EcoT14I CCWWGG 1 cut(s) 613
EcoT38I GRGCYC 2 cut(s) 506, 672
ErhI CCWWGG 1 cut(s) 613
Esp3I CGTCTC 2 cut(s) 416, 632
FaeI CATG 2 cut(s) 601, 664
FalI AAGNNNNNCTT 4 cut(s) 87, 119, 1055, 1087
FaqI GGGAC 1 cut(s) 796
FatI CATG 2 cut(s) 597, 660
FauI CCCGC 5 cut(s) 91, 112, 698, 1049, 1189
FblI GTMKAC 1 cut(s) 393
Fnu4HI GCNGC 3 cut(s) 72, 1194, 1405
FokI GGATG 1 cut(s) 69
FriOI GRGCYC 2 cut(s) 506, 672
Fsp4HI GCNGC 3 cut(s) 72, 1194, 1405
FspBI CTAG 3 cut(s) 107, 1046, 1178
GlaI GCGC 3 cut(s) 444, 816, 1092
GluI GCNGC 3 cut(s) 72, 1194, 1405
HaeII RGCGCY 1 cut(s) 818
HaeIII GGCC 2 cut(s) 765, 1373
HgaI GACGC 1 cut(s) 1252
HhaI GCGC 3 cut(s) 445, 817, 1093
Hin1II CATG 2 cut(s) 601, 664
Hin6I GCGC 3 cut(s) 443, 815, 1091
HinP1I GCGC 3 cut(s) 443, 815, 1091
HincII GTYRAC 1 cut(s) 528
HindII GTYRAC 1 cut(s) 528
HindIII AAGCTT 3 cut(s) 259, 1349, 1428
HpaI GTTAAC 1 cut(s) 528
HphI GGTGA 4 cut(s) 196, 316, 478, 1024
Hpy166II GTNNAC 3 cut(s) 394, 486, 528
Hpy188I TCNGA 4 cut(s) 495, 674, 882, 1126
Hpy188III TCNNGA 9 cut(s) 86, 334, 499, 644, 899, 940, 1003, 1063, 1159
Hpy8I GTNNAC 3 cut(s) 394, 486, 528
Hpy99I CGWCG 2 cut(s) 289, 1024
HpyAV CCTTC 3 cut(s) 43, 147, 1279
HpyCH4III ACNGT 6 cut(s) 191, 215, 410, 573, 626, 1397
HpyCH4IV ACGT 5 cut(s) 77, 390, 945, 1232, 1323
HpyCH4V TGCA 3 cut(s) 224, 728, 1238
HpyF10VI GCNNNNNNNGC 6 cut(s) 116, 242, 251, 451, 734, 1301
HpyF3I CTNAG 4 cut(s) 149, 446, 746, 1072
HpySE526I ACGT 5 cut(s) 77, 390, 945, 1232, 1323
Hsp92II CATG 2 cut(s) 601, 664
HspAI GCGC 3 cut(s) 443, 815, 1091
KpnI GGTACC 1 cut(s) 171
KroI GCCGGC 1 cut(s) 1291
KroNI GCCGGC 1 cut(s) 1293
KspAI GTTAAC 1 cut(s) 528
LmnI GCTCC 2 cut(s) 68, 675
Lsp1109I GCAGC 2 cut(s) 58, 1205
LweI GCATC 1 cut(s) 737
MaeI CTAG 3 cut(s) 107, 1046, 1178
MaeII ACGT 5 cut(s) 77, 390, 945, 1232, 1323
MaeIII GTNAC 6 cut(s) 193, 620, 1012, 1199, 1328, 1357
MboII GAAGA 9 cut(s) 13, 34, 95, 172, 416, 704, 877, 908, 1024
MflI RGATCY 3 cut(s) 133, 829, 967
MhlI GDGCHC 2 cut(s) 506, 672
MluCI AATT 3 cut(s) 359, 371, 514
MlyI GAGTC 3 cut(s) 514, 1153, 1336
MmeI TCCRAC 1 cut(s) 1104
MnlI CCTC 9 cut(s) 56, 275, 366, 466, 479, 611, 726, 764, 1422
MroNI GCCGGC 1 cut(s) 1291
MroXI GAANNNNTTC 2 cut(s) 845, 869
MseI TTAA 5 cut(s) 384, 527, 680, 948, 1432
MslI CAYNNNNRTG 3 cut(s) 87, 309, 1341
MspA1I CMGCKG 1 cut(s) 1196
MspCI CTTAAG 1 cut(s) 383
MspR9I CCNGG 3 cut(s) 706, 781, 1370
MwoI GCNNNNNNNGC 6 cut(s) 116, 242, 251, 451, 734, 1301
NaeI GCCGGC 1 cut(s) 1293
NciI CCSGG 3 cut(s) 706, 781, 1370
NgoMIV GCCGGC 1 cut(s) 1291
NheI GCTAGC 1 cut(s) 1045
NlaIII CATG 2 cut(s) 601, 664
NlaIV GGNNCC 4 cut(s) 169, 637, 752, 1290
NmeAIII GCCGAG 1 cut(s) 522
NmuCI GTSAC 3 cut(s) 193, 1012, 1328
PaeR7I CTCGAG 2 cut(s) 470, 755
PdiI GCCGGC 1 cut(s) 1293
PdmI GAANNNNTTC 2 cut(s) 845, 869
PfeI GAWTC 7 cut(s) 699, 709, 742, 787, 841, 959, 1212
PflFI GACNNNGTC 2 cut(s) 215, 1018
PfoI TCCNGGA 2 cut(s) 704, 779
PinAI ACCGGT 2 cut(s) 480, 488
PkrI GCNGC 3 cut(s) 73, 1195, 1406
PleI GAGTC 3 cut(s) 514, 1152, 1335
PmaCI CACGTG 1 cut(s) 78
PmlI CACGTG 1 cut(s) 78
PpsI GAGTC 3 cut(s) 514, 1152, 1335
Ppu21I YACGTR 2 cut(s) 78, 391
Psp124BI GAGCTC 2 cut(s) 506, 672
Psp1406I AACGTT 2 cut(s) 945, 1232
PspCI CACGTG 1 cut(s) 78
PspEI GGTNACC 1 cut(s) 620
PspN4I GGNNCC 4 cut(s) 169, 637, 752, 1290
PspPI GGNCC 1 cut(s) 491
PspXI VCTCGAGB 2 cut(s) 470, 755
PsrI GAACNNNNNNTAC 2 cut(s) 136, 168
PsuI RGATCY 3 cut(s) 133, 829, 967
PsyI GACNNNGTC 2 cut(s) 215, 1018
RsaI GTAC 3 cut(s) 169, 389, 421
RsaNI GTAC 3 cut(s) 168, 388, 420
RseI CAYNNNNRTG 3 cut(s) 87, 309, 1341
Rsr2I CGGWCCG 1 cut(s) 491
RsrII CGGWCCG 1 cut(s) 491
SacI GAGCTC 2 cut(s) 506, 672
SaqAI TTAA 5 cut(s) 384, 527, 680, 948, 1432
SatI GCNGC 3 cut(s) 72, 1194, 1405
Sau96I GGNCC 1 cut(s) 491
SchI GAGTC 3 cut(s) 514, 1153, 1336
ScrFI CCNGG 3 cut(s) 706, 781, 1370
SduI GDGCHC 2 cut(s) 506, 672
SfaNI GCATC 1 cut(s) 737
Sfr274I CTCGAG 2 cut(s) 470, 755
SinI GGWCC 1 cut(s) 491
SlaI CTCGAG 2 cut(s) 470, 755
SmiMI CAYNNNNRTG 3 cut(s) 87, 309, 1341
SmlI CTYRAG 6 cut(s) 299, 332, 383, 470, 590, 755
SmoI CTYRAG 6 cut(s) 299, 332, 383, 470, 590, 755
SnaBI TACGTA 1 cut(s) 391
Sse9I AATT 3 cut(s) 359, 371, 514
SsiI CCGC 7 cut(s) 98, 119, 171, 691, 1056, 1196, 1404
SspMI CTAG 3 cut(s) 107, 1046, 1178
SstI GAGCTC 2 cut(s) 506, 672
StyD4I CCNGG 3 cut(s) 704, 779, 1368
StyI CCWWGG 1 cut(s) 613
TaaI ACNGT 6 cut(s) 191, 215, 410, 573, 626, 1397
TaiI ACGT 5 cut(s) 80, 393, 948, 1235, 1326
TaqI TCGA 6 cut(s) 471, 506, 756, 819, 1116, 1215
TasI AATT 3 cut(s) 359, 371, 514
TauI GCSGC 1 cut(s) 1407
TfiI GAWTC 7 cut(s) 699, 709, 742, 787, 841, 959, 1212
Tru1I TTAA 5 cut(s) 384, 527, 680, 948, 1432
Tru9I TTAA 5 cut(s) 384, 527, 680, 948, 1432
TscAI CASTG 4 cut(s) 214, 349, 637, 1381
TseFI GTSAC 3 cut(s) 193, 1012, 1328
TseI GCWGC 2 cut(s) 71, 1193
Tsp45I GTSAC 3 cut(s) 193, 1012, 1328
TspDTI ATGAA 4 cut(s) 13, 17, 108, 1102
TspGWI ACGGA 2 cut(s) 708, 711
TspRI CASTG 4 cut(s) 214, 349, 637, 1381
Tth111I GACNNNGTC 2 cut(s) 215, 1018
Vha464I CTTAAG 1 cut(s) 383
VpaK11BI GGWCC 1 cut(s) 491
XcmI CCANNNNNNNNNTGG 1 cut(s) 1381
XhoI CTCGAG 2 cut(s) 470, 755
XmiI GTMKAC 1 cut(s) 393
XmnI GAANNNNTTC 2 cut(s) 845, 869
XspI CTAG 3 cut(s) 107, 1046, 1178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.