Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005729

Physical Location & Seq

Genomic Coordinates Forward (+)

12180483 .. 12184528

Gene Structure 4046 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G33600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1437 bp

ATGAACTCTTGTTGCTTCCCTCTCTTCATCTTTGCATTCGTTATCTTTCTCCGGTGTTTAAGTCCCATTGAAGCTGCCACGTGTCATCCTGATGACGAGGCGGGTCTTTTAGCTTTTAAATCGGGTATAACTCAAGATCCTACGGGTATTCTCAGCTCTTGGAAGAAAGGTACTGACTGCTGTTCATGGAAGGGTGTCGGTTGTCTCACCAACCGCGTCACCGGACTCACTATCAACGGACAATCTGATGTTACTGGAAGCTTTCTTTCTGGCACTATCTCGCCGTCATTGGCCAAACTCCAACACCTTGTTGGTATTTACTTCACCAATCTTCGAAACATCACTGGTTCTTTTCCTCAATTCCTTTTCCAATTACCAAATGTAAAACAAGTCTACTTCACGAATAGCCGTCTCTCCGGTCCTCTTCCAGCTAACATTGGTGCGCTAAGCGAGTTAGGAGAACTAAGTCTCGACGGAAACCTGTTTACTGGTCCGATCCCGAGTTCCATTTCCAATTTAACCCGGTTATATCTGCTCAATCTTGGAGATAATCTCTTAACCGGAACTATACCTTTAGGTCTTGCTAATCTCAAGATCTTGTTGTCACTCAACTTTGGCAACAATCGTCTCTCTGAAACCATACCGGATATTTTCAAATCCATGCAGAAGCTCCAATCTCTAACCCTCTCCCGCAACAAATTCTCTGGAAATCTTCCTCCGTCCATTGCATCACTCAAACCAATTCTCAATTACCTCGATCTAAGCCAGAATAATCTCTCTGGGACAATCCCGACCTTTTTATCAAACTTCAAGGTACTAGACTCATTGGATCTTTCTAGAAATAGGTTCTCTGGGGTTGTTCCGAAGAGTTTAGCCAATATGCCTAAACTTTTCCATCTCAATCTCTCCCACAATTTTCTAACTGGTCCACTCCCTGCCATGAAGAACGTTGATGGCCTTGCCACTCTAGATCTTTCATACAACCAATTTCACCTCAAAACGATACCGAAATGGGTGACCTCGTCGCCGTCCATGTACTCGTTGAAGCTGGTAAAATGCGGGATCAATATGAGCTTAGACAATTGGAAGCCAGTGAGACCCAATATTTACTTTTACATCGATCTGTCAGAAAACGAGATCTCAGGGAGTCTAACATGGTTCTTCAACCTAGCGCATAACCTATATGAGTTTCAAGCGTCAGGGAACAAACTTCGATTCGACATGGGGAAGCTGAATTTAAGTGAGAGACTAGAAAGCCTCGATCTATCAAGGAATTTGATATTTGGGAAGGTACCAATGACCGTGGCTAAACTGCAAAAATTGAACTTGAGTCATAACCATCTTTGTGGAAAGCTTCCAGTGACTAAATTCCCGGCCAGCGCGTTTGTCGGTAATGACTGTCTCTGCGGCTCTCCGCTTTCTCCTTGTAAAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0036094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048507 GO:0048856 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8

Protein Analysis

478

Amino Acids

52.47

Weight (kDa)

9.17

Isoelectric Point (pI)

33.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	29 - 68	6.1e-14	Leucine rich repeat N-terminal domain
LRR_8	PF13855	175 - 234	4.1e-06	Leucine rich repeat
LRR_8	PF13855	249 - 305	2.4e-10	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33590 AT1G33590 AT1G33590 AT1G33600 AT1G33600 AT1G33610 AT1G33612 AT1G33670 AT2G26380
fragaria_vesca	FvH4_2g00740
malus_domestica	MD05G1002900.v1.1
prunus_persica	Prupe.8G006300_v2.0.a1
pyrus_communis	pycom05g00270
rosa_chinensis	RchiOBHm_Chr6g0251101
rosa_laevigata	RLG00000015484
rosa_multiflora	Rmu_sc0002219.1_g000008 Rmu_sc0002219.1_g000013 Rmu_sc0002219.1_g000015 Rmu_sc0024842.1_g000002
rosa_roxburghii	Rroxscaffold_7G00217040
rosa_rugosa	Rorug05G0500300
rosa_samantha	Rh6AG008300 Rh6AG008900 Rh6BG002700 Rh6BG002800 Rh6CG006100 Rh6DG006300
rosa_wichuraiana	Rw6G000920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1291
AccB1I	GGYRCC	1 cut(s)	1291
AccI	GTMKAC	1 cut(s)	393
AccII	CGCG	2 cut(s)	216, 1382
AciI	CCGC	6 cut(s)	101, 214, 691, 1059, 1407, 1415
AclI	AACGTT	1 cut(s)	948
AclWI	GGATC	4 cut(s)	131, 490, 837, 1070
AcoI	YGGCCR	2 cut(s)	291, 1374
AcsI	RAATTY	5 cut(s)	698, 1234, 1273, 1367, 1431
AcvI	CACGTG	1 cut(s)	81
AfaI	GTAC	4 cut(s)	172, 816, 1037, 1293
AflIII	ACRYGT	1 cut(s)	80
AgsI	TTSAA	7 cut(s)	71, 655, 811, 1045, 1165, 1193, 1324
Alw26I	GTCTC	7 cut(s)	209, 416, 473, 632, 1090, 1240, 1406
AlwI	GGATC	4 cut(s)	131, 490, 837, 1070
Ama87I	CYCGRG	1 cut(s)	499
AoxI	GGCC	3 cut(s)	291, 955, 1374
ApeKI	GCWGC	1 cut(s)	74
ApoI	RAATTY	5 cut(s)	698, 1234, 1273, 1367, 1431
Asp718I	GGTACC	1 cut(s)	1291
AspLEI	GCGC	3 cut(s)	445, 1174, 1382
AspS9I	GGNCC	3 cut(s)	419, 491, 926
AsuC2I	CCSGG	2 cut(s)	523, 1373
AsuHPI	GGTGA	5 cut(s)	199, 211, 316, 983, 1027
AsuII	TTCGAA	1 cut(s)	334
AvaI	CYCGRG	1 cut(s)	499
AvaII	GGWCC	3 cut(s)	419, 491, 926
BalI	TGGCCA	1 cut(s)	293
BanI	GGYRCC	1 cut(s)	1291
BbrPI	CACGTG	1 cut(s)	81
BbvI	GCAGC	1 cut(s)	61
BccI	CCATC	3 cut(s)	903, 947, 1347
BceAI	ACGGC	3 cut(s)	268, 393, 1012
BcnI	CCSGG	2 cut(s)	523, 1373
BcoDI	GTCTC	7 cut(s)	209, 416, 473, 632, 1090, 1240, 1406
BfaI	CTAG	5 cut(s)	818, 837, 968, 1169, 1250
BglII	AGATCT	3 cut(s)	594, 970, 1137
BisI	GCNGC	2 cut(s)	75, 1408
BlpI	GCTNAGC	1 cut(s)	446
BlsI	GCNGC	2 cut(s)	76, 1409
Bme1390I	CCNGG	2 cut(s)	523, 1373
Bme18I	GGWCC	3 cut(s)	419, 491, 926
BmeT110I	CYCGRG	1 cut(s)	499
BmgT120I	GGNCC	3 cut(s)	419, 491, 926
BmiI	GGNNCC	1 cut(s)	1293
BmrFI	CCNGG	2 cut(s)	523, 1373
BmsI	GCATC	1 cut(s)	737
BplI	GAGNNNNNCTC	2 cut(s)	537, 569
Bpu1102I	GCTNAGC	1 cut(s)	446
Bpu14I	TTCGAA	1 cut(s)	334
BpuEI	CTTGAG	3 cut(s)	117, 575, 1348
BpuMI	CCSGG	2 cut(s)	523, 1373
Bsa29I	ATCGAT	1 cut(s)	1119
BsaAI	YACGTR	1 cut(s)	81
BsaI	GGTCTC	1 cut(s)	1090
BsaJI	CCNNGG	1 cut(s)	1302
BsaWI	WCCGGW	5 cut(s)	51, 221, 416, 560, 643
Bse1I	ACTGG	6 cut(s)	259, 349, 493, 928, 1091, 1358
Bse3DI	GCAATG	1 cut(s)	723
BseCI	ATCGAT	1 cut(s)	1119
BseDI	CCNNGG	1 cut(s)	1302
BseGI	GGATG	1 cut(s)	85
BseMI	GCAATG	1 cut(s)	723
BseMII	CTCAG	2 cut(s)	166, 1155
BseNI	ACTGG	6 cut(s)	259, 349, 493, 928, 1091, 1358
BseXI	GCAGC	1 cut(s)	61
Bsh1236I	CGCG	2 cut(s)	216, 1382
BshFI	GGCC	3 cut(s)	293, 957, 1376
BshNI	GGYRCC	1 cut(s)	1291
BshVI	ATCGAT	1 cut(s)	1119
BsiHKCI	CYCGRG	1 cut(s)	499
BsiSI	CCGG	7 cut(s)	52, 222, 417, 523, 561, 644, 1373
BslFI	GGGAC	2 cut(s)	48, 796
BsmAI	GTCTC	7 cut(s)	209, 416, 473, 632, 1090, 1240, 1406
BsmBI	CGTCTC	2 cut(s)	416, 632
BsmFI	GGGAC	2 cut(s)	48, 796
BsmI	GAATGC	1 cut(s)	35
BsnI	GGCC	3 cut(s)	293, 957, 1376
Bso31I	GGTCTC	1 cut(s)	1090
BsoBI	CYCGRG	1 cut(s)	499
Bsp119I	TTCGAA	1 cut(s)	334
Bsp1720I	GCTNAGC	1 cut(s)	446
BspACI	CCGC	6 cut(s)	101, 214, 691, 1059, 1407, 1415
BspANI	GGCC	3 cut(s)	293, 957, 1376
BspCNI	CTCAG	2 cut(s)	165, 1154
BspDI	ATCGAT	1 cut(s)	1119
BspFNI	CGCG	2 cut(s)	216, 1382
BspLI	GGNNCC	1 cut(s)	1293
BspPI	GGATC	4 cut(s)	131, 490, 837, 1070
BspT104I	TTCGAA	1 cut(s)	334
BspT107I	GGYRCC	1 cut(s)	1291
BspTNI	GGTCTC	1 cut(s)	1090
BsrDI	GCAATG	1 cut(s)	723
BsrI	ACTGG	6 cut(s)	259, 349, 493, 928, 1091, 1358
BssECI	CCNNGG	1 cut(s)	1302
Bst4CI	ACNGT	2 cut(s)	1303, 1400
Bst6I	CTCTTC	3 cut(s)	29, 429, 860
BstBAI	YACGTR	1 cut(s)	81
BstBI	TTCGAA	1 cut(s)	334
BstC8I	GCNNGC	1 cut(s)	1378
BstDEI	CTNAG	6 cut(s)	152, 446, 464, 761, 1075, 1141
BstDSI	CCRYGG	1 cut(s)	1302
BstEII	GGTNACC	1 cut(s)	1015
BstF5I	GGATG	1 cut(s)	85
BstFNI	CGCG	2 cut(s)	216, 1382
BstHHI	GCGC	3 cut(s)	445, 1174, 1382
BstMAI	GTCTC	7 cut(s)	209, 416, 473, 632, 1090, 1240, 1406
BstPI	GGTNACC	1 cut(s)	1015
BstSCI	CCNGG	2 cut(s)	521, 1371
BstUI	CGCG	2 cut(s)	216, 1382
BstV1I	GCAGC	1 cut(s)	61
BstX2I	RGATCY	5 cut(s)	136, 594, 829, 970, 1137
BstXI	CCANNNNNNTGG	1 cut(s)	1346
BstYI	RGATCY	5 cut(s)	136, 594, 829, 970, 1137
Bsu15I	ATCGAT	1 cut(s)	1119
BsuRI	GGCC	3 cut(s)	293, 957, 1376
BsuTUI	ATCGAT	1 cut(s)	1119
BtgI	CCRYGG	1 cut(s)	1302
BtsCI	GGATG	1 cut(s)	85
BtsIMutI	CAGTG	3 cut(s)	342, 1098, 1365
Cac8I	GCNNGC	1 cut(s)	1378
CfoI	GCGC	3 cut(s)	445, 1174, 1382
Cfr13I	GGNCC	3 cut(s)	419, 491, 926
ClaI	ATCGAT	1 cut(s)	1119
CseI	GACGC	2 cut(s)	205, 1185
Csp6I	GTAC	4 cut(s)	171, 815, 1036, 1292
CspCI	CAANNNNNGTGG	2 cut(s)	1284, 1319
CviAII	CATG	6 cut(s)	186, 661, 940, 1033, 1155, 1222
CviQI	GTAC	4 cut(s)	171, 815, 1036, 1292
DdeI	CTNAG	6 cut(s)	152, 446, 464, 761, 1075, 1141
DraI	TTTAAA	1 cut(s)	118
EaeI	YGGCCR	2 cut(s)	291, 1374
Eam1104I	CTCTTC	3 cut(s)	29, 429, 860
EarI	CTCTTC	3 cut(s)	29, 429, 860
Eco31I	GGTCTC	1 cut(s)	1090
Eco47I	GGWCC	3 cut(s)	419, 491, 926
Eco72I	CACGTG	1 cut(s)	81
Eco88I	CYCGRG	1 cut(s)	499
Eco91I	GGTNACC	1 cut(s)	1015
EcoO65I	GGTNACC	1 cut(s)	1015
Esp3I	CGTCTC	2 cut(s)	416, 632
FaeI	CATG	6 cut(s)	189, 664, 943, 1036, 1158, 1225
FaqI	GGGAC	2 cut(s)	48, 796
FatI	CATG	6 cut(s)	185, 660, 939, 1032, 1154, 1221
FauI	CCCGC	3 cut(s)	94, 698, 1052
FblI	GTMKAC	1 cut(s)	393
Fnu4HI	GCNGC	2 cut(s)	75, 1408
FokI	GGATG	1 cut(s)	72
Fsp4HI	GCNGC	2 cut(s)	75, 1408
FspBI	CTAG	5 cut(s)	818, 837, 968, 1169, 1250
GlaI	GCGC	3 cut(s)	444, 1173, 1381
GluI	GCNGC	2 cut(s)	75, 1408
HaeIII	GGCC	3 cut(s)	293, 957, 1376
HapII	CCGG	7 cut(s)	52, 222, 417, 523, 561, 644, 1373
HgaI	GACGC	2 cut(s)	205, 1185
HhaI	GCGC	3 cut(s)	445, 1174, 1382
Hin1II	CATG	6 cut(s)	189, 664, 943, 1036, 1158, 1225
Hin6I	GCGC	3 cut(s)	443, 1172, 1380
HinP1I	GCGC	3 cut(s)	443, 1172, 1380
HindIII	AAGCTT	2 cut(s)	259, 1352
HinfI	GANTC	5 cut(s)	225, 821, 1147, 1215, 1330
HpaII	CCGG	7 cut(s)	52, 222, 417, 523, 561, 644, 1373
HphI	GGTGA	5 cut(s)	199, 211, 316, 983, 1027
Hpy166II	GTNNAC	3 cut(s)	394, 486, 929
Hpy188I	TCNGA	5 cut(s)	247, 495, 634, 864, 1129
Hpy8I	GTNNAC	3 cut(s)	394, 486, 929
Hpy99I	CGWCG	2 cut(s)	476, 1027
HpyAV	CCTTC	2 cut(s)	184, 1282
HpyCH4III	ACNGT	2 cut(s)	1303, 1400
HpyCH4IV	ACGT	2 cut(s)	80, 948
HpyCH4V	TGCA	4 cut(s)	35, 664, 728, 1315
HpyF3I	CTNAG	6 cut(s)	152, 446, 464, 761, 1075, 1141
HpySE526I	ACGT	2 cut(s)	80, 948
Hsp92II	CATG	6 cut(s)	189, 664, 943, 1036, 1158, 1225
HspAI	GCGC	3 cut(s)	443, 1172, 1380
KpnI	GGTACC	1 cut(s)	1295
LmnI	GCTCC	1 cut(s)	675
Lsp1109I	GCAGC	1 cut(s)	61
LweI	GCATC	1 cut(s)	737
MaeI	CTAG	5 cut(s)	818, 837, 968, 1169, 1250
MaeII	ACGT	2 cut(s)	80, 948
MaeIII	GTNAC	5 cut(s)	217, 250, 603, 1015, 1360
MboII	GAAGA	8 cut(s)	16, 175, 323, 416, 704, 877, 955, 1153
MfeI	CAATTG	1 cut(s)	1081
MflI	RGATCY	5 cut(s)	136, 594, 829, 970, 1137
MlsI	TGGCCA	1 cut(s)	293
MluNI	TGGCCA	1 cut(s)	293
MlyI	GAGTC	4 cut(s)	219, 815, 1156, 1339
MmeI	TCCRAC	1 cut(s)	325
Mox20I	TGGCCA	1 cut(s)	293
MscI	TGGCCA	1 cut(s)	293
MseI	TTAA	5 cut(s)	59, 117, 518, 557, 1238
MslI	CAYNNNNRTG	2 cut(s)	90, 1344
Msp20I	TGGCCA	1 cut(s)	293
MspI	CCGG	7 cut(s)	52, 222, 417, 523, 561, 644, 1373
MspR9I	CCNGG	2 cut(s)	523, 1373
MunI	CAATTG	1 cut(s)	1081
Mva1269I	GAATGC	1 cut(s)	35
MvnI	CGCG	2 cut(s)	216, 1382
NciI	CCSGG	2 cut(s)	523, 1373
NlaIII	CATG	6 cut(s)	189, 664, 943, 1036, 1158, 1225
NlaIV	GGNNCC	1 cut(s)	1293
NmuCI	GTSAC	4 cut(s)	217, 603, 1015, 1360
NspV	TTCGAA	1 cut(s)	334
PctI	GAATGC	1 cut(s)	35
PfeI	GAWTC	1 cut(s)	1215
PflFI	GACNNNGTC	1 cut(s)	1021
PkrI	GCNGC	2 cut(s)	76, 1409
PleI	GAGTC	4 cut(s)	219, 815, 1155, 1338
PmaCI	CACGTG	1 cut(s)	81
PmlI	CACGTG	1 cut(s)	81
PpsI	GAGTC	4 cut(s)	219, 815, 1155, 1338
Ppu21I	YACGTR	1 cut(s)	81
Psp1406I	AACGTT	1 cut(s)	948
PspCI	CACGTG	1 cut(s)	81
PspEI	GGTNACC	1 cut(s)	1015
PspN4I	GGNNCC	1 cut(s)	1293
PspPI	GGNCC	3 cut(s)	419, 491, 926
PsuI	RGATCY	5 cut(s)	136, 594, 829, 970, 1137
PsyI	GACNNNGTC	1 cut(s)	1021
RsaI	GTAC	4 cut(s)	172, 816, 1037, 1293
RsaNI	GTAC	4 cut(s)	171, 815, 1036, 1292
RseI	CAYNNNNRTG	2 cut(s)	90, 1344
SaqAI	TTAA	5 cut(s)	59, 117, 518, 557, 1238
SatI	GCNGC	2 cut(s)	75, 1408
Sau96I	GGNCC	3 cut(s)	419, 491, 926
SchI	GAGTC	4 cut(s)	219, 815, 1156, 1339
ScrFI	CCNGG	2 cut(s)	523, 1373
SfaNI	GCATC	1 cut(s)	737
SfuI	TTCGAA	1 cut(s)	334
SinI	GGWCC	3 cut(s)	419, 491, 926
SmiMI	CAYNNNNRTG	2 cut(s)	90, 1344
SmlI	CTYRAG	3 cut(s)	132, 590, 1327
SmoI	CTYRAG	3 cut(s)	132, 590, 1327
SsiI	CCGC	6 cut(s)	101, 214, 691, 1059, 1407, 1415
SspI	AATATT	1 cut(s)	1105
SspMI	CTAG	5 cut(s)	818, 837, 968, 1169, 1250
StyD4I	CCNGG	2 cut(s)	521, 1371
TaaI	ACNGT	2 cut(s)	1303, 1400
TaiI	ACGT	2 cut(s)	83, 951
TaqI	TCGA	7 cut(s)	334, 471, 756, 1119, 1213, 1218, 1260
TatI	WGTACW	1 cut(s)	1035
TauI	GCSGC	1 cut(s)	1410
TfiI	GAWTC	1 cut(s)	1215
Tru1I	TTAA	5 cut(s)	59, 117, 518, 557, 1238
Tru9I	TTAA	5 cut(s)	59, 117, 518, 557, 1238
TscAI	CASTG	3 cut(s)	349, 1098, 1365
TseFI	GTSAC	4 cut(s)	217, 603, 1015, 1360
TseI	GCWGC	1 cut(s)	74
Tsp45I	GTSAC	4 cut(s)	217, 603, 1015, 1360
TspDTI	ATGAA	5 cut(s)	16, 17, 174, 956, 966
TspGWI	ACGGA	3 cut(s)	252, 489, 708
TspRI	CASTG	3 cut(s)	349, 1098, 1365
Tth111I	GACNNNGTC	1 cut(s)	1021
VpaK11BI	GGWCC	3 cut(s)	419, 491, 926
XapI	RAATTY	5 cut(s)	698, 1234, 1273, 1367, 1431
XbaI	TCTAGA	2 cut(s)	836, 967
XcmI	CCANNNNNNNNNTGG	1 cut(s)	308
XmiI	GTMKAC	1 cut(s)	393
XspI	CTAG	5 cut(s)	818, 837, 968, 1169, 1250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.