Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024842.1

Orthogroup ID

OG0005729

Physical Location & Seq

Genomic Coordinates Forward (+)

11949 .. 13233

Gene Structure 1285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024842.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

atgaagcaccaccacctctccctcctcctcctcttcttcgccctcaccctccgctccctcacccccacctccgccgtctgccacgtcgacgaccaaaccggcctcctcgccttcaagtcaggcatcaaagccgacccctccaacatgctcacctcatggaaaaagggcacagactgctgcacgtggtacggcgtaacctgcaacagcaacaaccgggtcagaatgctgtacctctcgggccaacccgacaagcccaactcctccttatccggtacaatctctccctccctctcaaagctcaaattcctagacggcatctatctccaggacctcagaaacctcacgggtcctttcccggttttcctcttccagctccccaatctcaaatacgtctacatcgaaaacagcaagctctcgggtcggatacccgattccgtcggtaacttgacccagcttggggccctcagtttctactacaaccggttcaccggtccaatcccgagttcaatatccaggttgactcagttggatcagctcaaactcggcggcaaccttttaaccgggtccataccaaccggcatcaaaaaccttagcaagctcacctatctgactctcgagcgaaacgggttgtcgggtcccatacccgacttcttcgcctcttttccagagctccgaattctcaatcttacccgcaataaatttaccgggaaaatcccagcttcaatctccgctttggcgccaaaattgctctaccttgagcttggtcacaatgccttgaccgtgtctgggcttgacagattgaacgtcagctataatcatctgtgtggacagcttccggccaccaagtttccggcttcagcatttttgggaaacgattgtctctgcggttctccactggctgcatgtaaaaaggtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0036094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048507 GO:0048856 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8

Protein Analysis

305

Amino Acids

33.29

Weight (kDa)

9.5

Isoelectric Point (pI)

27.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005729)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33590 AT1G33590 AT1G33590 AT1G33600 AT1G33600 AT1G33610 AT1G33612 AT1G33670 AT2G26380
fragaria_vesca	FvH4_2g00740
malus_domestica	MD05G1002900.v1.1
prunus_persica	Prupe.8G006300_v2.0.a1
pyrus_communis	pycom05g00270
rosa_chinensis	RchiOBHm_Chr6g0251101
rosa_laevigata	RLG00000015484
rosa_multiflora	Rmu_sc0002219.1_g000008 Rmu_sc0002219.1_g000013 Rmu_sc0002219.1_g000015 Rmu_sc0024842.1_g000002
rosa_roxburghii	Rroxscaffold_7G00217040
rosa_rugosa	Rorug05G0500300
rosa_samantha	Rh6AG008300 Rh6AG008900 Rh6BG002700 Rh6BG002800 Rh6CG006100 Rh6DG006300
rosa_wichuraiana	Rw6G000920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	206
AccB1I	GGYRCC	1 cut(s)	736
AccBSI	CCGCTC	1 cut(s)	54
AccI	GTMKAC	2 cut(s)	87, 393
AciI	CCGC	6 cut(s)	52, 72, 546, 691, 729, 885
AclWI	GGATC	1 cut(s)	537
AcoI	YGGCCR	1 cut(s)	837
AcsI	RAATTY	3 cut(s)	302, 675, 698
AcuI	CTGAAG	1 cut(s)	840
AcvI	CACGTG	1 cut(s)	183
AcyI	GRCGYC	1 cut(s)	737
AfaI	GTAC	3 cut(s)	188, 230, 274
AfiI	CCNNNNNNNGG	3 cut(s)	456, 457, 786
AgeI	ACCGGT	2 cut(s)	480, 488
AgsI	TTSAA	4 cut(s)	115, 507, 723, 802
AjiI	CACGTC	1 cut(s)	85
AjnI	CCWGG	2 cut(s)	324, 512
AjuI	GAANNNNNNNTTGG	2 cut(s)	487, 519
Alw21I	GWGCWC	1 cut(s)	672
Alw26I	GTCTC	1 cut(s)	884
AlwI	GGATC	1 cut(s)	537
Ama87I	CYCGRG	4 cut(s)	235, 415, 499, 614
AoxI	GGCC	4 cut(s)	100, 238, 459, 837
ApaI	GGGCCC	1 cut(s)	463
ApeKI	GCWGC	2 cut(s)	177, 899
ApoI	RAATTY	3 cut(s)	302, 675, 698
AsiGI	ACCGGT	2 cut(s)	480, 488
AspLEI	GCGC	1 cut(s)	739
AspS9I	GGNCC	8 cut(s)	238, 328, 347, 459, 460, 491, 564, 635
AsuC2I	CCSGG	4 cut(s)	215, 356, 562, 706
AsuHPI	GGTGA	5 cut(s)	37, 52, 142, 478, 592
AvaI	CYCGRG	4 cut(s)	235, 415, 499, 614
AvaII	GGWCC	5 cut(s)	328, 347, 491, 564, 635
BaeGI	GKGCMC	2 cut(s)	170, 463
BanI	GGYRCC	1 cut(s)	736
BanII	GRGCYC	2 cut(s)	463, 672
BbrPI	CACGTG	1 cut(s)	183
Bbv12I	GWGCWC	1 cut(s)	672
BbvI	GCAGC	2 cut(s)	164, 886
BceAI	ACGGC	3 cut(s)	59, 205, 328
BciT130I	CCWGG	2 cut(s)	326, 514
BciVI	GTATCC	1 cut(s)	417
BcnI	CCSGG	4 cut(s)	215, 356, 562, 706
BcoDI	GTCTC	1 cut(s)	884
BfaI	CTAG	2 cut(s)	308, 916
BfoI	RGCGCY	1 cut(s)	740
BfuAI	ACCTGC	1 cut(s)	206
BfuI	GTATCC	1 cut(s)	417
BisI	GCNGC	3 cut(s)	178, 547, 900
BlsI	GCNGC	3 cut(s)	179, 548, 901
Bme1390I	CCNGG	6 cut(s)	215, 326, 356, 514, 562, 706
Bme18I	GGWCC	5 cut(s)	328, 347, 491, 564, 635
BmeT110I	CYCGRG	4 cut(s)	235, 415, 499, 614
BmgBI	CACGTC	1 cut(s)	85
BmgT120I	GGNCC	8 cut(s)	238, 328, 347, 459, 460, 491, 564, 635
BmiI	GGNNCC	7 cut(s)	348, 460, 461, 565, 636, 637, 738
BmrFI	CCNGG	6 cut(s)	215, 326, 356, 514, 562, 706
BmsI	GCATC	3 cut(s)	132, 324, 588
BpmI	CTGGAG	1 cut(s)	308
Bpu10I	CCTNAGC	1 cut(s)	590
BpuEI	CTTGAG	1 cut(s)	776
BpuMI	CCSGG	4 cut(s)	215, 356, 562, 706
BsaAI	YACGTR	1 cut(s)	183
BsaHI	GRCGYC	1 cut(s)	737
BsaWI	WCCGGW	3 cut(s)	269, 480, 488
BsaXI	ACNNNNNCTCC	3 cut(s)	32, 265, 295
Bsc4I	CCNNNNNNNGG	3 cut(s)	456, 457, 786
Bse118I	RCCGGY	4 cut(s)	98, 480, 488, 575
Bse1I	ACTGG	1 cut(s)	900
BseBI	CCWGG	2 cut(s)	326, 514
BseLI	CCNNNNNNNGG	3 cut(s)	456, 457, 786
BseMII	CTCAG	3 cut(s)	346, 478, 536
BseNI	ACTGG	1 cut(s)	900
BseRI	GAGGAG	5 cut(s)	14, 17, 20, 95, 250
BseSI	GKGCMC	2 cut(s)	170, 463
BseXI	GCAGC	2 cut(s)	164, 886
BseYI	CCCAGC	2 cut(s)	450, 715
BsgI	GTGCAG	1 cut(s)	163
BshFI	GGCC	4 cut(s)	102, 240, 461, 839
BshNI	GGYRCC	1 cut(s)	736
BshTI	ACCGGT	2 cut(s)	480, 488
BsiHKAI	GWGCWC	1 cut(s)	672
BsiHKCI	CYCGRG	4 cut(s)	235, 415, 499, 614
BslFI	GGGAC	1 cut(s)	621
BslI	CCNNNNNNNGG	3 cut(s)	456, 457, 786
BsmAI	GTCTC	1 cut(s)	884
BsmFI	GGGAC	1 cut(s)	621
BsmI	GAATGC	1 cut(s)	228
BsnI	GGCC	4 cut(s)	102, 240, 461, 839
BsoBI	CYCGRG	4 cut(s)	235, 415, 499, 614
Bsp120I	GGGCCC	1 cut(s)	459
Bsp1286I	GDGCHC	3 cut(s)	170, 463, 672
Bsp143I	GATC	1 cut(s)	529
BspACI	CCGC	6 cut(s)	52, 72, 546, 691, 729, 885
BspANI	GGCC	4 cut(s)	102, 240, 461, 839
BspCNI	CTCAG	3 cut(s)	345, 477, 535
BspLI	GGNNCC	7 cut(s)	348, 460, 461, 565, 636, 637, 738
BspMI	ACCTGC	1 cut(s)	206
BspPI	GGATC	1 cut(s)	537
BspT107I	GGYRCC	1 cut(s)	736
BsrBI	CCGCTC	1 cut(s)	54
BsrFI	RCCGGY	4 cut(s)	98, 480, 488, 575
BsrI	ACTGG	1 cut(s)	900
BssAI	RCCGGY	4 cut(s)	98, 480, 488, 575
BssMI	GATC	1 cut(s)	529
BssNI	GRCGYC	1 cut(s)	737
Bst2UI	CCWGG	2 cut(s)	326, 514
Bst4CI	ACNGT	1 cut(s)	781
Bst6I	CTCTTC	2 cut(s)	38, 371
BstACI	GRCGYC	1 cut(s)	737
BstAPI	GCANNNNNTGC	1 cut(s)	174
BstBAI	YACGTR	1 cut(s)	183
BstC8I	GCNNGC	2 cut(s)	410, 596
BstDEI	CTNAG	4 cut(s)	332, 464, 522, 590
BstH2I	RGCGCY	1 cut(s)	740
BstHHI	GCGC	1 cut(s)	739
BstKTI	GATC	1 cut(s)	532
BstMAI	GTCTC	1 cut(s)	884
BstMBI	GATC	1 cut(s)	529
BstMWI	GCNNNNNNNGC	3 cut(s)	174, 198, 745
BstNI	CCWGG	2 cut(s)	326, 514
BstNSI	RCATGY	2 cut(s)	148, 906
BstSCI	CCNGG	6 cut(s)	213, 324, 354, 512, 560, 704
BstSLI	GKGCMC	2 cut(s)	170, 463
BstV1I	GCAGC	2 cut(s)	164, 886
BsuI	GTATCC	1 cut(s)	417
BsuRI	GGCC	4 cut(s)	102, 240, 461, 839
BtrI	CACGTC	1 cut(s)	85
BtsIMutI	CAGTG	1 cut(s)	893
BveI	ACCTGC	1 cut(s)	206
Cac8I	GCNNGC	2 cut(s)	410, 596
CfoI	GCGC	1 cut(s)	739
Cfr10I	RCCGGY	4 cut(s)	98, 480, 488, 575
Cfr13I	GGNCC	8 cut(s)	238, 328, 347, 459, 460, 491, 564, 635
Csp6I	GTAC	3 cut(s)	187, 229, 273
CspAI	ACCGGT	2 cut(s)	480, 488
CviAII	CATG	3 cut(s)	145, 156, 903
CviQI	GTAC	3 cut(s)	187, 229, 273
DdeI	CTNAG	4 cut(s)	332, 464, 522, 590
DinI	GGCGCC	1 cut(s)	738
DpnI	GATC	1 cut(s)	531
DpnII	GATC	1 cut(s)	529
EaeI	YGGCCR	1 cut(s)	837
Eam1104I	CTCTTC	2 cut(s)	38, 371
EarI	CTCTTC	2 cut(s)	38, 371
EciI	GGCGGA	1 cut(s)	61
Ecl136II	GAGCTC	1 cut(s)	670
Eco24I	GRGCYC	2 cut(s)	463, 672
Eco47I	GGWCC	5 cut(s)	328, 347, 491, 564, 635
Eco53kI	GAGCTC	1 cut(s)	670
Eco57I	CTGAAG	1 cut(s)	840
Eco72I	CACGTG	1 cut(s)	183
Eco88I	CYCGRG	4 cut(s)	235, 415, 499, 614
EcoICRI	GAGCTC	1 cut(s)	670
EcoO109I	RGGNCCY	5 cut(s)	328, 347, 459, 460, 635
EcoRI	GAATTC	1 cut(s)	675
EcoRII	CCWGG	2 cut(s)	324, 512
EcoT38I	GRGCYC	2 cut(s)	463, 672
EgeI	GGCGCC	1 cut(s)	738
EheI	GGCGCC	1 cut(s)	738
FaeI	CATG	3 cut(s)	148, 159, 906
FaiI	YATR	6 cut(s)	146, 157, 569, 641, 813, 904
FaqI	GGGAC	1 cut(s)	621
FatI	CATG	3 cut(s)	144, 155, 902
FauI	CCCGC	1 cut(s)	698
FblI	GTMKAC	2 cut(s)	87, 393
Fnu4HI	GCNGC	3 cut(s)	178, 547, 900
FriOI	GRGCYC	2 cut(s)	463, 672
Fsp4HI	GCNGC	3 cut(s)	178, 547, 900
FspBI	CTAG	2 cut(s)	308, 916
GlaI	GCGC	1 cut(s)	738
GluI	GCNGC	3 cut(s)	178, 547, 900
GsaI	CCCAGC	2 cut(s)	454, 719
GsuI	CTGGAG	1 cut(s)	308
HaeII	RGCGCY	1 cut(s)	740
HaeIII	GGCC	4 cut(s)	102, 240, 461, 839
HhaI	GCGC	1 cut(s)	739
Hin1I	GRCGYC	1 cut(s)	737
Hin1II	CATG	3 cut(s)	148, 159, 906
Hin6I	GCGC	1 cut(s)	737
HinP1I	GCGC	1 cut(s)	737
HincII	GTYRAC	2 cut(s)	88, 519
HindII	GTYRAC	2 cut(s)	88, 519
HinfI	GANTC	3 cut(s)	431, 520, 610
HphI	GGTGA	5 cut(s)	37, 52, 142, 478, 592
Hpy166II	GTNNAC	5 cut(s)	88, 394, 486, 519, 827
Hpy188I	TCNGA	5 cut(s)	221, 335, 423, 609, 674
Hpy188III	TCNNGA	3 cut(s)	499, 614, 665
Hpy8I	GTNNAC	5 cut(s)	88, 394, 486, 519, 827
Hpy99I	CGWCG	3 cut(s)	89, 92, 440
HpyAV	CCTTC	1 cut(s)	121
HpyCH4III	ACNGT	1 cut(s)	781
HpyCH4IV	ACGT	4 cut(s)	84, 182, 390, 804
HpyCH4V	TGCA	3 cut(s)	180, 201, 902
HpyF10VI	GCNNNNNNNGC	3 cut(s)	174, 198, 745
HpyF3I	CTNAG	4 cut(s)	332, 464, 522, 590
HpySE526I	ACGT	4 cut(s)	84, 182, 390, 804
Hsp92I	GRCGYC	1 cut(s)	737
Hsp92II	CATG	3 cut(s)	148, 159, 906
HspAI	GCGC	1 cut(s)	737
KasI	GGCGCC	1 cut(s)	736
KflI	GGGWCCC	1 cut(s)	635
Kzo9I	GATC	1 cut(s)	529
LmnI	GCTCC	3 cut(s)	59, 378, 675
Lsp1109I	GCAGC	2 cut(s)	164, 886
LweI	GCATC	3 cut(s)	132, 324, 588
MaeI	CTAG	2 cut(s)	308, 916
MaeII	ACGT	4 cut(s)	84, 182, 390, 804
MaeIII	GTNAC	3 cut(s)	193, 440, 764
MalI	GATC	1 cut(s)	531
MbiI	CCGCTC	1 cut(s)	54
MboI	GATC	1 cut(s)	529
MboII	GAAGA	4 cut(s)	25, 28, 358, 643
MhlI	GDGCHC	3 cut(s)	170, 463, 672
MluCI	AATT	4 cut(s)	302, 675, 698, 743
Mly113I	GGCGCC	1 cut(s)	737
MlyI	GAGTC	2 cut(s)	514, 604
MmeI	TCCRAC	3 cut(s)	165, 401, 507
MseI	TTAA	1 cut(s)	557
MslI	CAYNNNNRTG	1 cut(s)	822
MspR9I	CCNGG	6 cut(s)	215, 326, 356, 514, 562, 706
Mva1269I	GAATGC	1 cut(s)	228
MvaI	CCWGG	2 cut(s)	326, 514
MwoI	GCNNNNNNNGC	3 cut(s)	174, 198, 745
NarI	GGCGCC	1 cut(s)	737
NciI	CCSGG	4 cut(s)	215, 356, 562, 706
NdeII	GATC	1 cut(s)	529
NlaIII	CATG	3 cut(s)	148, 159, 906
NlaIV	GGNNCC	7 cut(s)	348, 460, 461, 565, 636, 637, 738
NmeAIII	GCCGAG	1 cut(s)	522
NmuCI	GTSAC	1 cut(s)	764
NspI	RCATGY	2 cut(s)	148, 906
PaeR7I	CTCGAG	1 cut(s)	614
PcsI	WCGNNNNNNNCGW	1 cut(s)	396
PctI	GAATGC	1 cut(s)	228
PfeI	GAWTC	1 cut(s)	431
PflFI	GACNNNGTC	1 cut(s)	781
PfoI	TCCNGGA	1 cut(s)	324
PinAI	ACCGGT	2 cut(s)	480, 488
PkrI	GCNGC	3 cut(s)	179, 548, 901
PleI	GAGTC	2 cut(s)	514, 604
PluTI	GGCGCC	1 cut(s)	740
PmaCI	CACGTG	1 cut(s)	183
PmlI	CACGTG	1 cut(s)	183
PpsI	GAGTC	2 cut(s)	514, 604
Ppu21I	YACGTR	1 cut(s)	183
PpuMI	RGGWCCY	3 cut(s)	328, 347, 635
Psp124BI	GAGCTC	1 cut(s)	672
Psp5II	RGGWCCY	3 cut(s)	328, 347, 635
Psp6I	CCWGG	2 cut(s)	324, 512
PspCI	CACGTG	1 cut(s)	183
PspFI	CCCAGC	2 cut(s)	450, 715
PspGI	CCWGG	2 cut(s)	324, 512
PspN4I	GGNNCC	7 cut(s)	348, 460, 461, 565, 636, 637, 738
PspOMI	GGGCCC	1 cut(s)	459
PspPI	GGNCC	8 cut(s)	238, 328, 347, 459, 460, 491, 564, 635
PspPPI	RGGWCCY	3 cut(s)	328, 347, 635
PsyI	GACNNNGTC	1 cut(s)	781
RsaI	GTAC	3 cut(s)	188, 230, 274
RsaNI	GTAC	3 cut(s)	187, 229, 273
RseI	CAYNNNNRTG	1 cut(s)	822
SacI	GAGCTC	1 cut(s)	672
SalI	GTCGAC	1 cut(s)	86
SaqAI	TTAA	1 cut(s)	557
SatI	GCNGC	3 cut(s)	178, 547, 900
Sau3AI	GATC	1 cut(s)	529
Sau96I	GGNCC	8 cut(s)	238, 328, 347, 459, 460, 491, 564, 635
SchI	GAGTC	2 cut(s)	514, 604
ScrFI	CCNGG	6 cut(s)	215, 326, 356, 514, 562, 706
SduI	GDGCHC	3 cut(s)	170, 463, 672
SfaNI	GCATC	3 cut(s)	132, 324, 588
SfoI	GGCGCC	1 cut(s)	738
Sfr274I	CTCGAG	1 cut(s)	614
SgrDI	CGTCGACG	1 cut(s)	86
SinI	GGWCC	5 cut(s)	328, 347, 491, 564, 635
SlaI	CTCGAG	1 cut(s)	614
SmiMI	CAYNNNNRTG	1 cut(s)	822
SmlI	CTYRAG	2 cut(s)	614, 755
SmoI	CTYRAG	2 cut(s)	614, 755
Sse9I	AATT	4 cut(s)	302, 675, 698, 743
SsiI	CCGC	6 cut(s)	52, 72, 546, 691, 729, 885
SspDI	GGCGCC	1 cut(s)	736
SspMI	CTAG	2 cut(s)	308, 916
SstI	GAGCTC	1 cut(s)	672
StyD4I	CCNGG	6 cut(s)	213, 324, 354, 512, 560, 704
TaaI	ACNGT	1 cut(s)	781
TaiI	ACGT	4 cut(s)	87, 185, 393, 807
TaqI	TCGA	3 cut(s)	87, 399, 615
TasI	AATT	4 cut(s)	302, 675, 698, 743
TauI	GCSGC	1 cut(s)	549
TfiI	GAWTC	1 cut(s)	431
Tru1I	TTAA	1 cut(s)	557
Tru9I	TTAA	1 cut(s)	557
TscAI	CASTG	1 cut(s)	900
TseFI	GTSAC	1 cut(s)	764
TseI	GCWGC	2 cut(s)	177, 899
Tsp45I	GTSAC	1 cut(s)	764
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	424
TspRI	CASTG	1 cut(s)	900
Tth111I	GACNNNGTC	1 cut(s)	781
VpaK11BI	GGWCC	5 cut(s)	328, 347, 491, 564, 635
XapI	RAATTY	3 cut(s)	302, 675, 698
XceI	RCATGY	2 cut(s)	148, 906
XhoI	CTCGAG	1 cut(s)	614
XmiI	GTMKAC	2 cut(s)	87, 393
XspI	CTAG	2 cut(s)	308, 916

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.