AT1G33610

BEST Arabidopsis thaliana protein match is Leucine-rich repeat (LRR) family protein (TAIR

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
12188678 .. 12190461
1784 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G33610.1

Sequence Viewer

Length: 1437 bp
ATGAATTCACTCTCCTTCACTCTCTTCATATTTTCTGTCATTACCTTTCTACAATGTTTAAGTTCAACCGGAGCTGCCACGTGTCATCCTGATGACGAGGCGGGTCTTTTAGCTTTCAAATCCGGTATAACACAAGATCCTTCGGGCATGCTCAGCTCTTGGAAGAAGGGTACTTCTTGCTGCTCGTGGAAAGGTATCATTTGCTTTAACAGTGACCGCGTCACCATGCTTGAACTAGTAGGATTTCCCAAAAAACCCGAACGTTCCCTCTCCGGCACTCTCTCACCGTCGCTAGCCAAACTCCAGCACCTAAGCGTGATTAGCTTAGGAGGTCATGTGAACATCACTGGATCTTTTCCTAAGTTCCTTCTCCAATTACCAAAGCTAAGGTACGTTGACATCCAAAATAACCGTCTCTCCGGTCCACTTCCGGCTAACATCGGCGTGCTAAGCTTGTTGGAAGAAATCTTTCTTCAAGGAAATAAGTTCACCGGTCCCATCCCGAACTCGATATCGAATCTAACTCGATTATCTTATCTCATTTTTGGCGGTAATCTCCTAACCGGGACTATACCCTTAGGGATTGCTAATCTCAAGCTCATGCAGAATCTGCAACTCGGCGACAACCGCCTCTCTGGCACCATCCCGGATATTTTCGAATCCATGAAGTTGCTCAAATTTCTCGATCTCTCCAGCAACGAATTCTACGGGAAACTTCCTCTATCGATTGCTACACTGGCACCGACACTCCTGGCCCTCCAAGTGAGCCAGAACAATCTCTCTGGGGCGATCCCAAACTATATATCAAGATTCAACAAGCTTGAAAAGTTAGATCTCTCCAAGAACCGGTTCTCGGGGGTTGTGCCTCAAGGTTTCGTCAATCTCACCAATATTAACAATCTTGATCTCTCTCACAATCTTCTAACCGGTCAATTTCCTGACTTGACCGTCAACACTATCGAATATCTTGATCTCTCTTACAACCAATTTCAACTAGAAACGATTCCACAATGGGTGACCTTGTTGCCGAGCGTCTTCTTGTTGAAGCTAGCAAAATGCGGGATCAAGATGAGCTTAGATGATTGGAAGCCAGCGGAACCGTTGTACTACCATTACATTGATTTGTCGAAAAACGAGATCTCAGGGAGTCTAGAAAGGTTCTTGAACGAGACGAGGTATCTGCTTGAGTTTCGGGCGGCGGAGAACAAACTTCGATTCGATATGGGGAACCTAACGTTTCCGAGGACACTAAAAACTTTGGATCTGTCAAGGAACTTGGTATTTGGTAAGGTGCCTGTCACGGTGGCTGGTCTACAAAGACTAAACTTAAGTCAAAACCATCTTTGTGGAGAACTTCCTACGACAAAGTTCCCGGCTAGCGCCTTCGCCGGTAACGACTGTCTTTGTGGCTCTCCACTTTCTCCTTGTAAAGCTTAG

Protein Analysis

478

Amino Acids

52.67

Weight (kDa)

8.8

Isoelectric Point (pI)

34.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 29 - 68 1.5e-13 Leucine rich repeat N-terminal domain
LRR_14 PF23598 94 - 207 7.3e-12 Leucine-rich repeat region
LRR_8 PF13855 249 - 308 4.5e-08 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 947
AccB1I GGYRCC 3 cut(s) 638, 739, 1291
AccI GTMKAC 1 cut(s) 1312
AccII CGCG 1 cut(s) 219
AciI CCGC 8 cut(s) 101, 217, 549, 628, 1059, 1094, 1196, 1199
AclI AACGTT 2 cut(s) 262, 1235
AclWI GGATC 5 cut(s) 131, 358, 784, 1070, 1269
AcsI RAATTY 3 cut(s) 4, 677, 701
AcvI CACGTG 1 cut(s) 81
AfaI GTAC 3 cut(s) 172, 392, 1106
AfiI CCNNNNNNNGG 2 cut(s) 846, 853
AflII CTTAAG 1 cut(s) 1327
AflIII ACRYGT 1 cut(s) 80
AgeI ACCGGT 3 cut(s) 491, 846, 926
AgsI TTSAA 9 cut(s) 66, 118, 233, 476, 814, 824, 992, 1045, 1165
AhlI ACTAGT 1 cut(s) 235
AjnI CCWGG 1 cut(s) 750
AjuI GAANNNNNNNTTGG 2 cut(s) 833, 865
Alw26I GTCTC 2 cut(s) 419, 1163
AlwI GGATC 5 cut(s) 131, 358, 784, 1070, 1269
AlwNI CAGNNNCTG 1 cut(s) 610
Ama87I CYCGRG 1 cut(s) 853
AoxI GGCC 1 cut(s) 753
ApeKI GCWGC 2 cut(s) 74, 180
ApoI RAATTY 3 cut(s) 4, 677, 701
ArsI GACNNNNNNTTYG 2 cut(s) 397, 429
AsiGI ACCGGT 3 cut(s) 491, 846, 926
Asp700I GAANNNNTTC 3 cut(s) 468, 848, 1002
AspLEI GCGC 1 cut(s) 1382
AspS9I GGNCC 3 cut(s) 422, 494, 754
AsuC2I CCSGG 3 cut(s) 565, 647, 1373
AsuHPI GGTGA 5 cut(s) 214, 276, 481, 877, 1027
AsuII TTCGAA 1 cut(s) 657
AsuNHI GCTAGC 3 cut(s) 292, 1048, 1376
AvaI CYCGRG 1 cut(s) 853
AvaII GGWCC 2 cut(s) 422, 494
AxyI CCTNAGG 1 cut(s) 577
BanI GGYRCC 3 cut(s) 638, 739, 1291
BauI CACGAG 1 cut(s) 184
BbrPI CACGTG 1 cut(s) 81
BbsI GAAGAC 1 cut(s) 1027
BbvI GCAGC 2 cut(s) 61, 167
BccI CCATC 3 cut(s) 506, 650, 1347
BcgI CGANNNNNNTGC 2 cut(s) 1162, 1196
BciT130I CCWGG 1 cut(s) 752
BcnI CCSGG 3 cut(s) 565, 647, 1373
BcoDI GTCTC 2 cut(s) 419, 1163
BcuI ACTAGT 1 cut(s) 235
BfaI CTAG 6 cut(s) 236, 293, 995, 1049, 1151, 1377
BfoI RGCGCY 1 cut(s) 1383
BfrI CTTAAG 1 cut(s) 1327
BglI GCCNNNNNGGC 1 cut(s) 636
BglII AGATCT 2 cut(s) 832, 1137
BisI GCNGC 3 cut(s) 75, 181, 1197
BlpI GCTNAGC 2 cut(s) 152, 449
BlsI GCNGC 3 cut(s) 76, 182, 1198
Bme1390I CCNGG 4 cut(s) 565, 647, 752, 1373
Bme18I GGWCC 2 cut(s) 422, 494
BmeT110I CYCGRG 1 cut(s) 853
BmgT120I GGNCC 3 cut(s) 422, 494, 754
BmiI GGNNCC 6 cut(s) 496, 640, 741, 1098, 1229, 1293
BmrFI CCNGG 4 cut(s) 565, 647, 752, 1373
BmtI GCTAGC 3 cut(s) 296, 1052, 1380
BpiI GAAGAC 1 cut(s) 1027
BpmI CTGGAG 2 cut(s) 287, 676
Bpu10I CCTNAGC 3 cut(s) 311, 325, 386
Bpu1102I GCTNAGC 2 cut(s) 152, 449
Bpu14I TTCGAA 1 cut(s) 657
BpuEI CTTGAG 3 cut(s) 578, 852, 1205
BpuMI CCSGG 3 cut(s) 565, 647, 1373
Bsa29I ATCGAT 1 cut(s) 725
BsaAI YACGTR 1 cut(s) 81
BsaJI CCNNGG 1 cut(s) 1241
BsaWI WCCGGW 6 cut(s) 68, 122, 419, 491, 846, 926
BsaXI ACNNNNNCTCC 6 cut(s) 321, 351, 401, 431, 732, 762
Bsc4I CCNNNNNNNGG 2 cut(s) 846, 853
Bse118I RCCGGY 4 cut(s) 491, 846, 926, 1388
Bse1I ACTGG 2 cut(s) 352, 741
Bse21I CCTNAGG 1 cut(s) 577
BseBI CCWGG 1 cut(s) 752
BseCI ATCGAT 1 cut(s) 725
BseDI CCNNGG 1 cut(s) 1241
BseGI GGATG 4 cut(s) 85, 399, 498, 642
BseLI CCNNNNNNNGG 2 cut(s) 846, 853
BseMII CTCAG 2 cut(s) 166, 1155
BseNI ACTGG 2 cut(s) 352, 741
BseXI GCAGC 2 cut(s) 61, 167
Bsh1236I CGCG 1 cut(s) 219
BshFI GGCC 1 cut(s) 755
BshNI GGYRCC 3 cut(s) 638, 739, 1291
BshTI ACCGGT 3 cut(s) 491, 846, 926
BshVI ATCGAT 1 cut(s) 725
BsiHKCI CYCGRG 1 cut(s) 853
BslFI GGGAC 2 cut(s) 480, 580
BslI CCNNNNNNNGG 2 cut(s) 846, 853
BsmAI GTCTC 2 cut(s) 419, 1163
BsmBI CGTCTC 2 cut(s) 419, 1163
BsmFI GGGAC 2 cut(s) 480, 580
BsnI GGCC 1 cut(s) 755
BsoBI CYCGRG 1 cut(s) 853
Bsp119I TTCGAA 1 cut(s) 657
Bsp1720I GCTNAGC 2 cut(s) 152, 449
BspACI CCGC 8 cut(s) 101, 217, 549, 628, 1059, 1094, 1196, 1199
BspANI GGCC 1 cut(s) 755
BspCNI CTCAG 2 cut(s) 165, 1154
BspDI ATCGAT 1 cut(s) 725
BspFNI CGCG 1 cut(s) 219
BspLI GGNNCC 6 cut(s) 496, 640, 741, 1098, 1229, 1293
BspOI GCTAGC 3 cut(s) 296, 1052, 1380
BspPI GGATC 5 cut(s) 131, 358, 784, 1070, 1269
BspT104I TTCGAA 1 cut(s) 657
BspT107I GGYRCC 3 cut(s) 638, 739, 1291
BspTI CTTAAG 1 cut(s) 1327
BsrFI RCCGGY 4 cut(s) 491, 846, 926, 1388
BsrI ACTGG 2 cut(s) 352, 741
BssAI RCCGGY 4 cut(s) 491, 846, 926, 1388
BssECI CCNNGG 1 cut(s) 1241
BssSI CACGAG 1 cut(s) 184
Bst2BI CACGAG 1 cut(s) 184
Bst2UI CCWGG 1 cut(s) 752
Bst4CI ACNGT 7 cut(s) 212, 288, 413, 949, 1101, 1303, 1400
Bst6I CTCTTC 1 cut(s) 29
BstAFI CTTAAG 1 cut(s) 1327
BstAPI GCANNNNNTGC 1 cut(s) 610
BstBAI YACGTR 1 cut(s) 81
BstBI TTCGAA 1 cut(s) 657
BstC8I GCNNGC 6 cut(s) 149, 294, 446, 1050, 1092, 1378
BstEII GGTNACC 1 cut(s) 1015
BstF5I GGATG 4 cut(s) 85, 399, 498, 642
BstFNI CGCG 1 cut(s) 219
BstH2I RGCGCY 1 cut(s) 1383
BstHHI GCGC 1 cut(s) 1382
BstMAI GTCTC 2 cut(s) 419, 1163
BstMWI GCNNNNNNNGC 7 cut(s) 153, 321, 450, 610, 627, 636, 737
BstNI CCWGG 1 cut(s) 752
BstNSI RCATGY 1 cut(s) 151
BstPI GGTNACC 1 cut(s) 1015
BstSCI CCNGG 4 cut(s) 563, 645, 750, 1371
BstUI CGCG 1 cut(s) 219
BstV1I GCAGC 2 cut(s) 61, 167
BstV2I GAAGAC 1 cut(s) 1027
BstX2I RGATCY 5 cut(s) 136, 350, 832, 1137, 1261
BstXI CCANNNNNNTGG 1 cut(s) 1346
BstYI RGATCY 5 cut(s) 136, 350, 832, 1137, 1261
Bsu15I ATCGAT 1 cut(s) 725
Bsu36I CCTNAGG 1 cut(s) 577
BsuRI GGCC 1 cut(s) 755
BsuTUI ATCGAT 1 cut(s) 725
BtsCI GGATG 4 cut(s) 85, 399, 498, 642
BtsIMutI CAGTG 3 cut(s) 217, 345, 734
Cac8I GCNNGC 6 cut(s) 149, 294, 446, 1050, 1092, 1378
CaiI CAGNNNCTG 1 cut(s) 610
CfoI GCGC 1 cut(s) 1382
Cfr10I RCCGGY 4 cut(s) 491, 846, 926, 1388
Cfr13I GGNCC 3 cut(s) 422, 494, 754
ClaI ATCGAT 1 cut(s) 725
CseI GACGC 2 cut(s) 208, 1021
Csp6I GTAC 3 cut(s) 171, 391, 1105
CspAI ACCGGT 3 cut(s) 491, 846, 926
CviAII CATG 5 cut(s) 148, 226, 335, 601, 664
CviQI GTAC 3 cut(s) 171, 391, 1105
DrdI GACNNNNNNGTC 1 cut(s) 947
DseDI GACNNNNNNGTC 1 cut(s) 947
Eam1104I CTCTTC 1 cut(s) 29
EarI CTCTTC 1 cut(s) 29
EciI GGCGGA 1 cut(s) 1214
Eco32I GATATC 1 cut(s) 513
Eco47I GGWCC 2 cut(s) 422, 494
Eco72I CACGTG 1 cut(s) 81
Eco81I CCTNAGG 1 cut(s) 577
Eco88I CYCGRG 1 cut(s) 853
Eco91I GGTNACC 1 cut(s) 1015
EcoO65I GGTNACC 1 cut(s) 1015
EcoRI GAATTC 2 cut(s) 4, 701
EcoRII CCWGG 1 cut(s) 750
EcoRV GATATC 1 cut(s) 513
Esp3I CGTCTC 2 cut(s) 419, 1163
FaeI CATG 5 cut(s) 151, 229, 338, 604, 667
FalI AAGNNNNNCTT 2 cut(s) 1058, 1090
FaqI GGGAC 2 cut(s) 480, 580
FatI CATG 5 cut(s) 147, 225, 334, 600, 663
FauI CCCGC 2 cut(s) 94, 1052
FblI GTMKAC 1 cut(s) 1312
Fnu4HI GCNGC 3 cut(s) 75, 181, 1197
FokI GGATG 4 cut(s) 72, 386, 485, 629
Fsp4HI GCNGC 3 cut(s) 75, 181, 1197
FspBI CTAG 6 cut(s) 236, 293, 995, 1049, 1151, 1377
GlaI GCGC 1 cut(s) 1381
GluI GCNGC 3 cut(s) 75, 181, 1197
GsuI CTGGAG 2 cut(s) 287, 676
HaeII RGCGCY 1 cut(s) 1383
HaeIII GGCC 1 cut(s) 755
HgaI GACGC 2 cut(s) 208, 1021
HhaI GCGC 1 cut(s) 1382
Hin1II CATG 5 cut(s) 151, 229, 338, 604, 667
Hin6I GCGC 1 cut(s) 1380
HinP1I GCGC 1 cut(s) 1380
HincII GTYRAC 2 cut(s) 397, 952
HindII GTYRAC 2 cut(s) 397, 952
HindIII AAGCTT 3 cut(s) 451, 818, 1431
HinfI GANTC 7 cut(s) 517, 607, 659, 810, 1003, 1147, 1215
HphI GGTGA 5 cut(s) 214, 276, 481, 877, 1027
Hpy166II GTNNAC 6 cut(s) 340, 397, 425, 489, 952, 1313
Hpy188I TCNGA 1 cut(s) 1242
Hpy8I GTNNAC 6 cut(s) 340, 397, 425, 489, 952, 1313
Hpy99I CGWCG 1 cut(s) 292
HpyAV CCTTC 5 cut(s) 25, 150, 160, 377, 1393
HpyCH4III ACNGT 7 cut(s) 212, 288, 413, 949, 1101, 1303, 1400
HpyCH4IV ACGT 4 cut(s) 80, 262, 393, 1235
HpyCH4V TGCA 2 cut(s) 604, 613
HpyF10VI GCNNNNNNNGC 7 cut(s) 153, 321, 450, 610, 627, 636, 737
HpySE526I ACGT 4 cut(s) 80, 262, 393, 1235
Hsp92II CATG 5 cut(s) 151, 229, 338, 604, 667
HspAI GCGC 1 cut(s) 1380
LmnI GCTCC 1 cut(s) 71
Lsp1109I GCAGC 2 cut(s) 61, 167
MaeI CTAG 6 cut(s) 236, 293, 995, 1049, 1151, 1377
MaeII ACGT 4 cut(s) 80, 262, 393, 1235
MaeIII GTNAC 5 cut(s) 212, 220, 1015, 1297, 1391
MboII GAAGA 6 cut(s) 16, 175, 464, 473, 911, 1027
MflI RGATCY 5 cut(s) 136, 350, 832, 1137, 1261
MluCI AATT 6 cut(s) 4, 374, 677, 701, 932, 986
MlyI GAGTC 1 cut(s) 1156
MmeI TCCRAC 1 cut(s) 438
MnlI CCTC 9 cut(s) 91, 278, 323, 641, 729, 767, 876, 1167, 1236
MroXI GAANNNNTTC 3 cut(s) 468, 848, 1002
MseI TTAA 4 cut(s) 59, 207, 894, 1328
MslI CAYNNNNRTG 3 cut(s) 90, 443, 1344
MspA1I CMGCKG 1 cut(s) 1094
MspCI CTTAAG 1 cut(s) 1327
MspR9I CCNGG 4 cut(s) 565, 647, 752, 1373
MvaI CCWGG 1 cut(s) 752
MvnI CGCG 1 cut(s) 219
MwoI GCNNNNNNNGC 7 cut(s) 153, 321, 450, 610, 627, 636, 737
NciI CCSGG 3 cut(s) 565, 647, 1373
NheI GCTAGC 3 cut(s) 292, 1048, 1376
NlaIII CATG 5 cut(s) 151, 229, 338, 604, 667
NlaIV GGNNCC 6 cut(s) 496, 640, 741, 1098, 1229, 1293
NmeAIII GCCGAG 2 cut(s) 597, 1053
NmuCI GTSAC 4 cut(s) 212, 220, 1015, 1297
NspI RCATGY 1 cut(s) 151
NspV TTCGAA 1 cut(s) 657
PaeI GCATGC 1 cut(s) 151
PcsI WCGNNNNNNNCGW 1 cut(s) 1392
PdmI GAANNNNTTC 3 cut(s) 468, 848, 1002
PfeI GAWTC 6 cut(s) 517, 607, 659, 810, 1003, 1215
PflFI GACNNNGTC 1 cut(s) 218
PfoI TCCNGGA 1 cut(s) 645
PinAI ACCGGT 3 cut(s) 491, 846, 926
PkrI GCNGC 3 cut(s) 76, 182, 1198
PleI GAGTC 1 cut(s) 1155
PmaCI CACGTG 1 cut(s) 81
PmlI CACGTG 1 cut(s) 81
PpsI GAGTC 1 cut(s) 1155
Ppu21I YACGTR 1 cut(s) 81
Psp1406I AACGTT 2 cut(s) 262, 1235
Psp6I CCWGG 1 cut(s) 750
PspCI CACGTG 1 cut(s) 81
PspEI GGTNACC 1 cut(s) 1015
PspGI CCWGG 1 cut(s) 750
PspN4I GGNNCC 6 cut(s) 496, 640, 741, 1098, 1229, 1293
PspPI GGNCC 3 cut(s) 422, 494, 754
PstNI CAGNNNCTG 1 cut(s) 610
PsuI RGATCY 5 cut(s) 136, 350, 832, 1137, 1261
PsyI GACNNNGTC 1 cut(s) 218
RsaI GTAC 3 cut(s) 172, 392, 1106
RsaNI GTAC 3 cut(s) 171, 391, 1105
RseI CAYNNNNRTG 3 cut(s) 90, 443, 1344
SaqAI TTAA 4 cut(s) 59, 207, 894, 1328
SatI GCNGC 3 cut(s) 75, 181, 1197
Sau96I GGNCC 3 cut(s) 422, 494, 754
SchI GAGTC 1 cut(s) 1156
ScrFI CCNGG 4 cut(s) 565, 647, 752, 1373
SfuI TTCGAA 1 cut(s) 657
SinI GGWCC 2 cut(s) 422, 494
SmiMI CAYNNNNRTG 3 cut(s) 90, 443, 1344
SmlI CTYRAG 4 cut(s) 593, 867, 1184, 1327
SmoI CTYRAG 4 cut(s) 593, 867, 1184, 1327
SpeI ACTAGT 1 cut(s) 235
SphI GCATGC 1 cut(s) 151
Sse9I AATT 6 cut(s) 4, 374, 677, 701, 932, 986
SsiI CCGC 8 cut(s) 101, 217, 549, 628, 1059, 1094, 1196, 1199
SspI AATATT 1 cut(s) 892
SspMI CTAG 6 cut(s) 236, 293, 995, 1049, 1151, 1377
StyD4I CCNGG 4 cut(s) 563, 645, 750, 1371
TaaI ACNGT 7 cut(s) 212, 288, 413, 949, 1101, 1303, 1400
TaiI ACGT 4 cut(s) 83, 265, 396, 1238
TasI AATT 6 cut(s) 4, 374, 677, 701, 932, 986
TatI WGTACW 1 cut(s) 1104
TauI GCSGC 1 cut(s) 1199
TfiI GAWTC 6 cut(s) 517, 607, 659, 810, 1003, 1215
Tru1I TTAA 4 cut(s) 59, 207, 894, 1328
Tru9I TTAA 4 cut(s) 59, 207, 894, 1328
TscAI CASTG 3 cut(s) 217, 352, 741
TseFI GTSAC 4 cut(s) 212, 220, 1015, 1297
TseI GCWGC 2 cut(s) 74, 180
Tsp45I GTSAC 4 cut(s) 212, 220, 1015, 1297
TspDTI ATGAA 3 cut(s) 16, 17, 680
TspRI CASTG 3 cut(s) 217, 352, 741
Tth111I GACNNNGTC 1 cut(s) 218
Vha464I CTTAAG 1 cut(s) 1327
VpaK11BI GGWCC 2 cut(s) 422, 494
XapI RAATTY 3 cut(s) 4, 677, 701
XbaI TCTAGA 1 cut(s) 1150
XceI RCATGY 1 cut(s) 151
XmiI GTMKAC 1 cut(s) 1312
XmnI GAANNNNTTC 3 cut(s) 468, 848, 1002
XspI CTAG 6 cut(s) 236, 293, 995, 1049, 1151, 1377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.