AT2G26380

BEST Arabidopsis thaliana protein match is Leucine-rich repeat (LRR) family protein (TAIR

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
11226488 .. 11228123
1636 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G26380.1

Sequence Viewer

Length: 1443 bp
ATGAACTCTTGTTCTTTCCACAACTTCTTCATTTTCACCGCCGTGATCTTTCTCCGGTGTTTAAACCCCACCGCAGCAGCCACGTGTCATCCTGATGATGAGGCGGGTCTATTAGCTTTTAAATCGGGTATAACCAAAGATCCTTCAGGTATTCTAAGCACTTGGAAAAAAGGTACTGATTGCTGCTCTTGGAACGGTGTCAGTTGCCCTAACGGCAACCGTGTCGTCGTACTCACTATCCGCATAGAGTCCGACGATGCCGGAATCTTTCTCTCTGGCACAATCTCTCCGTCACTGGCCAAACTCCAGCATTTGGAAGGGGTCGTCTTTATCAATCTCAAAAACATCACAGGACCATTTCCACCATTTTTATTCAGATTACCACATCTAAAGTATGTTTACCTCGAGAATACACGTCTCTCTGGTCCTCTTCCAGCCAACATCGGCGCGCTTAACCGCTTAGATACATTAACCGTTAAAGGAAACCGGTTCATCGGTTCAATCCCGAGTTCCATATCCAATTTAACTCGGTTAAACTACCTAAATCTTGGCGGTAATCTCTTAACCGGAACAATACCGTTAGGGATTGCTAATCTCAAGCTCATTTCGAATCTTAATCTCGATGGAAACCGTCTCTCTGGAACCATCCCGGATATTTTCAAATCAATGACTAACCTTCGAATCCTCACTCTCTCACGCAACAGATTCTCCGGGAAGCTCCCTCCGTCGATTGCATCGCTCGCGCCGGTTCTTGCGTTCCTTGAGCTAGGTCAGAACAATCTCTCGGGGTCGATACCGAGCTATTTATCAAGATTCGTGGCGCTCGACACACTGGATCTCTCCAAGAACCGTTTCTCTGGAGCCGTGCCGAAGAGTTTGGCCAAGCTGACTAAAATTGCTAATATCAATCTCTCTCACAATCTTCTAACCAATCCATTCCCTGTTTTGAACGTGAAGAATTACATCTTGACTCTAGATCTGTCGTACAACAAGTTTCACATGGAAACAATCCCGGAATGGGTGACCTCAGCGTCGATCCTCGGCTCTTTGAAGTTGGCTAAATGTGGAATCAAGATGAGCTTAGACGATTGGAAAACAAGGCAAACTGATCTCTACGTTTCCATTGATCTTTCGGACAACGAGATCTCAGGGAGTCCACTGAGGTTCTTGAAGGGAGCAGAGCAACTACGGGAGTTTCGAATGTCGGGGAACAAACTCCGATTCGATTTGAGGAAGCTAAGTTTCTCGACGACGCTCGAGACGCTTGATCTATCAAGGAACTTAGTGTTCGGGAAAGTGCCGGCGAGGGTGGCCGGATTAAAGACACTTAACTTGAGTCAAAACCATCTTTGTGGGAAACTTCCGGTGACAAAGTTTCCAGAAAGTGTGTTTGCCGGCAACGACTGTCTATGCGGCTCCCCGCTAAGTCATTGTAAAGGTTAA

Protein Analysis

480

Amino Acids

52.43

Weight (kDa)

9.55

Isoelectric Point (pI)

31.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 30 - 69 7.1e-14 Leucine rich repeat N-terminal domain
LRR_14 PF23598 124 - 233 9.7e-14 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1030
AccB7I CCANNNNNTGG 1 cut(s) 313
AccII CGCG 2 cut(s) 449, 743
AciI CCGC 8 cut(s) 39, 72, 104, 241, 457, 552, 1413, 1421
AclWI GGATC 3 cut(s) 134, 843, 1030
AcoI YGGCCR 3 cut(s) 297, 879, 1311
AcuI CTGAAG 1 cut(s) 129
AcvI CACGTG 1 cut(s) 84
AfaI GTAC 3 cut(s) 175, 231, 986
AfiI CCNNNNNNNGG 2 cut(s) 313, 1018
AflIII ACRYGT 2 cut(s) 83, 413
AgeI ACCGGT 1 cut(s) 486
AgsI TTSAA 5 cut(s) 501, 661, 949, 1051, 1171
AjiI CACGTC 1 cut(s) 416
AjuI GAANNNNNNNTTGG 2 cut(s) 836, 868
AleI CACNNNNGTG 1 cut(s) 41
AluBI AGCT 8 cut(s) 116, 601, 718, 766, 801, 886, 1080, 1237
AluI AGCT 8 cut(s) 116, 601, 718, 766, 801, 886, 1080, 1237
Alw26I GTCTC 3 cut(s) 422, 638, 1253
AlwI GGATC 3 cut(s) 134, 843, 1030
Ama87I CYCGRG 4 cut(s) 404, 505, 784, 1256
AoxI GGCC 3 cut(s) 297, 879, 1311
ApeKI GCWGC 3 cut(s) 74, 77, 183
AsiGI ACCGGT 1 cut(s) 486
Asp700I GAANNNNTTC 1 cut(s) 851
AspLEI GCGC 4 cut(s) 449, 451, 745, 823
AspS9I GGNCC 2 cut(s) 353, 425
AsuC2I CCSGG 3 cut(s) 650, 712, 1013
AsuHPI GGTGA 3 cut(s) 28, 1033, 1378
AsuII TTCGAA 3 cut(s) 608, 679, 1198
AvaI CYCGRG 4 cut(s) 404, 505, 784, 1256
AvaII GGWCC 2 cut(s) 353, 425
BalI TGGCCA 2 cut(s) 299, 881
BbrPI CACGTG 1 cut(s) 84
BbvCI CCTCAGC 1 cut(s) 1027
BbvI GCAGC 3 cut(s) 86, 89, 170
BccI CCATC 3 cut(s) 617, 653, 1353
BceAI ACGGC 3 cut(s) 26, 229, 848
BcgI CGANNNNNNTGC 2 cut(s) 205, 239
BcnI CCSGG 3 cut(s) 650, 712, 1013
BcoDI GTCTC 3 cut(s) 422, 638, 1253
BfaI CTAG 2 cut(s) 767, 974
BfoI RGCGCY 1 cut(s) 824
BglI GCCNNNNNGGC 1 cut(s) 213
BglII AGATCT 2 cut(s) 976, 1143
BisI GCNGC 4 cut(s) 75, 78, 184, 1414
BlsI GCNGC 4 cut(s) 76, 79, 185, 1415
Bme1390I CCNGG 3 cut(s) 650, 712, 1013
Bme18I GGWCC 2 cut(s) 353, 425
BmeT110I CYCGRG 4 cut(s) 404, 505, 784, 1256
BmgBI CACGTC 1 cut(s) 416
BmgT120I GGNCC 2 cut(s) 353, 425
BmiI GGNNCC 3 cut(s) 643, 862, 1417
BmrFI CCNGG 3 cut(s) 650, 712, 1013
BmsI GCATC 2 cut(s) 247, 743
BpmI CTGGAG 2 cut(s) 290, 879
Bpu10I CCTNAGC 1 cut(s) 1027
Bpu14I TTCGAA 3 cut(s) 608, 679, 1198
BpuEI CTTGAG 3 cut(s) 581, 782, 1354
BpuMI CCSGG 3 cut(s) 650, 712, 1013
BsaAI YACGTR 1 cut(s) 84
BsaJI CCNNGG 1 cut(s) 1039
BsaWI WCCGGW 4 cut(s) 54, 486, 566, 1363
BsaXI ACNNNNNCTCC 4 cut(s) 271, 301, 692, 722
Bsc4I CCNNNNNNNGG 2 cut(s) 313, 1018
Bse118I RCCGGY 4 cut(s) 486, 745, 1300, 1394
Bse1I ACTGG 2 cut(s) 300, 837
BseDI CCNNGG 1 cut(s) 1039
BseGI GGATG 2 cut(s) 88, 645
BseLI CCNNNNNNNGG 2 cut(s) 313, 1018
BseMII CTCAG 3 cut(s) 1041, 1151, 1161
BseNI ACTGG 2 cut(s) 300, 837
BsePI GCGCGC 1 cut(s) 447
BseXI GCAGC 3 cut(s) 86, 89, 170
Bsh1236I CGCG 2 cut(s) 449, 743
BshFI GGCC 3 cut(s) 299, 881, 1313
BshTI ACCGGT 1 cut(s) 486
BsiHKCI CYCGRG 4 cut(s) 404, 505, 784, 1256
BslI CCNNNNNNNGG 2 cut(s) 313, 1018
BsmAI GTCTC 3 cut(s) 422, 638, 1253
BsmBI CGTCTC 3 cut(s) 422, 638, 1253
BsnI GGCC 3 cut(s) 299, 881, 1313
BsoBI CYCGRG 4 cut(s) 404, 505, 784, 1256
Bsp119I TTCGAA 3 cut(s) 608, 679, 1198
Bsp143I GATC 9 cut(s) 45, 139, 835, 976, 1035, 1108, 1126, 1143, 1267
BspACI CCGC 8 cut(s) 39, 72, 104, 241, 457, 552, 1413, 1421
BspANI GGCC 3 cut(s) 299, 881, 1313
BspCNI CTCAG 3 cut(s) 1040, 1152, 1160
BspFNI CGCG 2 cut(s) 449, 743
BspLI GGNNCC 3 cut(s) 643, 862, 1417
BspPI GGATC 3 cut(s) 134, 843, 1030
BspT104I TTCGAA 3 cut(s) 608, 679, 1198
BsrFI RCCGGY 4 cut(s) 486, 745, 1300, 1394
BsrI ACTGG 2 cut(s) 300, 837
BssAI RCCGGY 4 cut(s) 486, 745, 1300, 1394
BssECI CCNNGG 1 cut(s) 1039
BssHII GCGCGC 1 cut(s) 447
BssMI GATC 9 cut(s) 45, 139, 835, 976, 1035, 1108, 1126, 1143, 1267
Bst4CI ACNGT 7 cut(s) 197, 221, 475, 579, 632, 851, 1406
Bst6I CTCTTC 2 cut(s) 435, 866
BstBAI YACGTR 1 cut(s) 84
BstBI TTCGAA 3 cut(s) 608, 679, 1198
BstC8I GCNNGC 4 cut(s) 449, 741, 1302, 1396
BstDEI CTNAG 9 cut(s) 155, 460, 1027, 1081, 1147, 1160, 1238, 1282, 1424
BstEII GGTNACC 1 cut(s) 1021
BstF5I GGATG 2 cut(s) 88, 645
BstFNI CGCG 2 cut(s) 449, 743
BstH2I RGCGCY 1 cut(s) 824
BstHHI GCGC 4 cut(s) 449, 451, 745, 823
BstKTI GATC 9 cut(s) 48, 142, 838, 979, 1038, 1111, 1129, 1146, 1270
BstMAI GTCTC 3 cut(s) 422, 638, 1253
BstMBI GATC 9 cut(s) 45, 139, 835, 976, 1035, 1108, 1126, 1143, 1267
BstMWI GCNNNNNNNGC 4 cut(s) 213, 740, 1261, 1310
BstPI GGTNACC 1 cut(s) 1021
BstSCI CCNGG 3 cut(s) 648, 710, 1011
BstUI CGCG 2 cut(s) 449, 743
BstV1I GCAGC 3 cut(s) 86, 89, 170
BstX2I RGATCY 4 cut(s) 139, 835, 976, 1143
BstXI CCANNNNNNTGG 1 cut(s) 1352
BstYI RGATCY 4 cut(s) 139, 835, 976, 1143
BsuRI GGCC 3 cut(s) 299, 881, 1313
BtgZI GCGATG 1 cut(s) 720
BtrI CACGTC 1 cut(s) 416
BtsCI GGATG 2 cut(s) 88, 645
BtsIMutI CAGTG 3 cut(s) 293, 830, 1157
Cac8I GCNNGC 4 cut(s) 449, 741, 1302, 1396
CfoI GCGC 4 cut(s) 449, 451, 745, 823
Cfr10I RCCGGY 4 cut(s) 486, 745, 1300, 1394
Cfr13I GGNCC 2 cut(s) 353, 425
CseI GACGC 3 cut(s) 1020, 1261, 1270
Csp6I GTAC 3 cut(s) 174, 230, 985
CspAI ACCGGT 1 cut(s) 486
CspCI CAANNNNNGTGG 2 cut(s) 798, 833
CviAII CATG 1 cut(s) 1000
CviQI GTAC 3 cut(s) 174, 230, 985
DdeI CTNAG 9 cut(s) 155, 460, 1027, 1081, 1147, 1160, 1238, 1282, 1424
DpnI GATC 9 cut(s) 47, 141, 837, 978, 1037, 1110, 1128, 1145, 1269
DpnII GATC 9 cut(s) 45, 139, 835, 976, 1035, 1108, 1126, 1143, 1267
DraI TTTAAA 2 cut(s) 63, 121
DrdI GACNNNNNNGTC 1 cut(s) 1030
DseDI GACNNNNNNGTC 1 cut(s) 1030
EaeI YGGCCR 3 cut(s) 297, 879, 1311
Eam1104I CTCTTC 2 cut(s) 435, 866
EarI CTCTTC 2 cut(s) 435, 866
Eco47I GGWCC 2 cut(s) 353, 425
Eco57I CTGAAG 1 cut(s) 129
Eco72I CACGTG 1 cut(s) 84
Eco88I CYCGRG 4 cut(s) 404, 505, 784, 1256
Eco91I GGTNACC 1 cut(s) 1021
EcoO65I GGTNACC 1 cut(s) 1021
Esp3I CGTCTC 3 cut(s) 422, 638, 1253
FaeI CATG 1 cut(s) 1003
FaiI YATR 6 cut(s) 131, 245, 396, 515, 1001, 1411
FalI AAGNNNNNCTT 2 cut(s) 1064, 1096
FatI CATG 1 cut(s) 999
FauI CCCGC 2 cut(s) 97, 1428
Fnu4HI GCNGC 4 cut(s) 75, 78, 184, 1414
FokI GGATG 2 cut(s) 75, 632
Fsp4HI GCNGC 4 cut(s) 75, 78, 184, 1414
FspBI CTAG 2 cut(s) 767, 974
GlaI GCGC 4 cut(s) 448, 450, 744, 822
GluI GCNGC 4 cut(s) 75, 78, 184, 1414
GsuI CTGGAG 2 cut(s) 290, 879
HaeII RGCGCY 1 cut(s) 824
HaeIII GGCC 3 cut(s) 299, 881, 1313
HgaI GACGC 3 cut(s) 1020, 1261, 1270
HhaI GCGC 4 cut(s) 449, 451, 745, 823
Hin1II CATG 1 cut(s) 1003
Hin6I GCGC 4 cut(s) 447, 449, 743, 821
HinP1I GCGC 4 cut(s) 447, 449, 743, 821
HphI GGTGA 3 cut(s) 28, 1033, 1378
Hpy166II GTNNAC 2 cut(s) 400, 1157
Hpy188I TCNGA 5 cut(s) 253, 377, 774, 1135, 1220
Hpy8I GTNNAC 2 cut(s) 400, 1157
Hpy99I CGWCG 6 cut(s) 230, 257, 730, 1036, 1252, 1255
HpyAV CCTTC 4 cut(s) 153, 311, 686, 1165
HpyCH4III ACNGT 7 cut(s) 197, 221, 475, 579, 632, 851, 1406
HpyCH4IV ACGT 4 cut(s) 83, 415, 951, 1116
HpyCH4V TGCA 1 cut(s) 734
HpyF10VI GCNNNNNNNGC 4 cut(s) 213, 740, 1261, 1310
HpyF3I CTNAG 9 cut(s) 155, 460, 1027, 1081, 1147, 1160, 1238, 1282, 1424
HpySE526I ACGT 4 cut(s) 83, 415, 951, 1116
Hsp92II CATG 1 cut(s) 1003
HspAI GCGC 4 cut(s) 447, 449, 743, 821
KroI GCCGGC 2 cut(s) 1300, 1394
KroNI GCCGGC 2 cut(s) 1302, 1396
Kzo9I GATC 9 cut(s) 45, 139, 835, 976, 1035, 1108, 1126, 1143, 1267
LmnI GCTCC 4 cut(s) 723, 860, 1175, 1421
Lsp1109I GCAGC 3 cut(s) 86, 89, 170
LweI GCATC 2 cut(s) 247, 743
MaeI CTAG 2 cut(s) 767, 974
MaeII ACGT 4 cut(s) 83, 415, 951, 1116
MaeIII GTNAC 3 cut(s) 291, 1021, 1366
MalI GATC 9 cut(s) 47, 141, 837, 978, 1037, 1110, 1128, 1145, 1269
MboI GATC 9 cut(s) 45, 139, 835, 976, 1035, 1108, 1126, 1143, 1267
MboII GAAGA 5 cut(s) 19, 422, 883, 914, 967
MflI RGATCY 4 cut(s) 139, 835, 976, 1143
MlsI TGGCCA 2 cut(s) 299, 881
MluCI AATT 3 cut(s) 520, 894, 958
MluNI TGGCCA 2 cut(s) 299, 881
MlyI GAGTC 4 cut(s) 257, 964, 1162, 1345
MmeI TCCRAC 1 cut(s) 276
Mox20I TGGCCA 2 cut(s) 299, 881
MroNI GCCGGC 2 cut(s) 1300, 1394
MroXI GAANNNNTTC 1 cut(s) 851
MscI TGGCCA 2 cut(s) 299, 881
MslI CAYNNNNRTG 3 cut(s) 41, 93, 1350
Msp20I TGGCCA 2 cut(s) 299, 881
MspR9I CCNGG 3 cut(s) 650, 712, 1013
MssI GTTTAAAC 1 cut(s) 63
MvnI CGCG 2 cut(s) 449, 743
MwoI GCNNNNNNNGC 4 cut(s) 213, 740, 1261, 1310
NaeI GCCGGC 2 cut(s) 1302, 1396
NciI CCSGG 3 cut(s) 650, 712, 1013
NdeII GATC 9 cut(s) 45, 139, 835, 976, 1035, 1108, 1126, 1143, 1267
NgoMIV GCCGGC 2 cut(s) 1300, 1394
NlaIII CATG 1 cut(s) 1003
NlaIV GGNNCC 3 cut(s) 643, 862, 1417
NmeAIII GCCGAG 1 cut(s) 1020
NmuCI GTSAC 3 cut(s) 291, 1021, 1366
NspV TTCGAA 3 cut(s) 608, 679, 1198
OliI CACNNNNGTG 1 cut(s) 41
PaeR7I CTCGAG 2 cut(s) 404, 1256
PauI GCGCGC 1 cut(s) 447
PcsI WCGNNNNNNNCGW 2 cut(s) 822, 1195
PdiI GCCGGC 2 cut(s) 1302, 1396
PdmI GAANNNNTTC 1 cut(s) 851
PfeI GAWTC 7 cut(s) 264, 610, 681, 705, 813, 1068, 1221
PflMI CCANNNNNTGG 1 cut(s) 313
PfoI TCCNGGA 3 cut(s) 648, 710, 1011
PinAI ACCGGT 1 cut(s) 486
PkrI GCNGC 4 cut(s) 76, 79, 185, 1415
PleI GAGTC 4 cut(s) 256, 964, 1161, 1344
PmaCI CACGTG 1 cut(s) 84
PmeI GTTTAAAC 1 cut(s) 63
PmlI CACGTG 1 cut(s) 84
PpsI GAGTC 4 cut(s) 256, 964, 1161, 1344
Ppu21I YACGTR 1 cut(s) 84
PspCI CACGTG 1 cut(s) 84
PspEI GGTNACC 1 cut(s) 1021
PspN4I GGNNCC 3 cut(s) 643, 862, 1417
PspPI GGNCC 2 cut(s) 353, 425
PsuI RGATCY 4 cut(s) 139, 835, 976, 1143
PteI GCGCGC 1 cut(s) 447
RsaI GTAC 3 cut(s) 175, 231, 986
RsaNI GTAC 3 cut(s) 174, 230, 985
RseI CAYNNNNRTG 3 cut(s) 41, 93, 1350
SatI GCNGC 4 cut(s) 75, 78, 184, 1414
Sau3AI GATC 9 cut(s) 45, 139, 835, 976, 1035, 1108, 1126, 1143, 1267
Sau96I GGNCC 2 cut(s) 353, 425
SchI GAGTC 4 cut(s) 257, 964, 1162, 1345
ScrFI CCNGG 3 cut(s) 650, 712, 1013
SfaNI GCATC 2 cut(s) 247, 743
Sfr274I CTCGAG 2 cut(s) 404, 1256
SfuI TTCGAA 3 cut(s) 608, 679, 1198
SinI GGWCC 2 cut(s) 353, 425
SlaI CTCGAG 2 cut(s) 404, 1256
SmiMI CAYNNNNRTG 3 cut(s) 41, 93, 1350
SmlI CTYRAG 5 cut(s) 404, 596, 761, 1256, 1333
SmoI CTYRAG 5 cut(s) 404, 596, 761, 1256, 1333
Sse9I AATT 3 cut(s) 520, 894, 958
SsiI CCGC 8 cut(s) 39, 72, 104, 241, 457, 552, 1413, 1421
SspMI CTAG 2 cut(s) 767, 974
StyD4I CCNGG 3 cut(s) 648, 710, 1011
TaaI ACNGT 7 cut(s) 197, 221, 475, 579, 632, 851, 1406
TaiI ACGT 4 cut(s) 86, 418, 954, 1119
TasI AATT 3 cut(s) 520, 894, 958
TauI GCSGC 1 cut(s) 1416
TfiI GAWTC 7 cut(s) 264, 610, 681, 705, 813, 1068, 1221
TscAI CASTG 3 cut(s) 300, 837, 1164
TseFI GTSAC 3 cut(s) 291, 1021, 1366
TseI GCWGC 3 cut(s) 74, 77, 183
Tsp45I GTSAC 3 cut(s) 291, 1021, 1366
TspDTI ATGAA 3 cut(s) 17, 19, 481
TspGWI ACGGA 2 cut(s) 279, 714
TspRI CASTG 3 cut(s) 300, 837, 1164
Van91I CCANNNNNTGG 1 cut(s) 313
VpaK11BI GGWCC 2 cut(s) 353, 425
XbaI TCTAGA 1 cut(s) 973
XhoI CTCGAG 2 cut(s) 404, 1256
XmnI GAANNNNTTC 1 cut(s) 851
XspI CTAG 2 cut(s) 767, 974
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.