AT1G33612

BEST Arabidopsis thaliana protein match is Leucine-rich repeat (LRR) family protein (TAIR

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
12191133 .. 12193270
2138 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G33612.1

Sequence Viewer

Length: 1368 bp
ATGAACTCTTGCTCCTTCAATTTATTCATCTTAGGTGCTATTATCTTTCTCCGGTGTTTTCGTTCCACCGGAGCTGCCACGTGTGATCCTGATGACGAAGCGGGTCTTTTAGGTTTCAAATCGGGTATAACCAAAGATCCTTCGGGCATTCTCAGCTCATGGAAGAAAGGTACTGACTGCTGCTTTTGGAGCGGTGTCTTTTGCGTCAACAACGACCGCGTCACACAACTAAGTGTGGATGGAGACTTTTCTCTTGACGGAAACTCTCCCTCCGGCACTATCTCGCCGATGCTGGCCAAACTTCAACACCTCGAGAGGATTCTTCTCACCTCTCTTCGAAAGATTACTGGTCCTTTTCCTCAATTCATTTTCCGATTACCAAAGCTAAATTACATAAACATCCAAGGTTGCCTTCTCTCTGGTCCCCTTCCAGCCAACATCGGCGAGCTAAGTCAATTGAAAACTTTAGTTATCGACGGAAACATGTTCACGGGTCATATTCCAAGTTCGATAGCCAATTTGACTCGGTTAACTTGGCTTAACCTCGGCAACAACCGCCTCTCTGGCACCATTCCAAACATATTTAAATCCATGAAAGAGCTCAATTCTCTTGATCTCTCCCGCAACGGATTTTTCGGGAGACTTCCTCCGTCGATTGCTTCGCTTGCACCAACTCTCTATTACCTCGATCTGAGCCAGAACAATCTCTCGGGGACGATCCCAAACTATTTATCAAGGTTTGAGGCGCTCTCCACATTGGTACTCTCGAAGAATAAGTACTCGGGGGTCGTGCCAATGAGTTTCACCAATCTGATCAACATTACCAATCTTGATCTCTCCCACAATCTTCTAACTGGTCCATTCCCTGTATTGAAAAGCATTAACGGCATTGAATCTCTGGATTTGTCGTACAACAAGTTTCACCTGAAAACGATTCCAAAATGGATGATATCGTCACCATCCATCTACTCATTGAAGTTGGCAAAATGTGGGCTGAAGATAAGCTTAGATGATTGGAAGCTAGCAGGGACCTACTACTATGATTCCATCGATCTGTCTGAAAACGAGATCTCAGGGAGTCCGGCTAAGTTCCTCAGCCAGATGAAGTATCTGATGGAGTTCCGAGCGGCAGGGAACAAACTCCGATTCGATTTGGGGAAGCTGACGTTTGTGAGGACTCTTGAAACCTTGGATTTGTCAAGGAACTTGATATTCGGGAGAGTGCTGGCAACATTTGCTGGACTGAAGACAATGAACGTGAGTCAAAACCATCTTTGCGGAAAACTTCCGGTGACAAAGTTCCCGGCCAGTGYGTTTGCGGGTAACGACTGTCTTTGTGGCTCTCCACTTTCTCCTTGTAAAGTGTAG

Protein Analysis

455

Amino Acids

49.86

Weight (kDa)

9.16

Isoelectric Point (pI)

38.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 30 - 68 2.2e-12 Leucine rich repeat N-terminal domain
LRR_14 PF23598 94 - 206 1.4e-09 Leucine-rich repeat region
LRR_8 PF13855 152 - 210 1e-08 Leucine rich repeat
LRR_8 PF13855 224 - 284 5.2e-08 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 566
AccBSI CCGCTC 2 cut(s) 192, 1127
AccII CGCG 1 cut(s) 219
AciI CCGC 8 cut(s) 101, 192, 217, 556, 622, 1127, 1278, 1319
AclWI GGATC 3 cut(s) 80, 131, 712
AcoI YGGCCR 2 cut(s) 294, 1305
AcuI CTGAAG 2 cut(s) 1016, 1265
AcvI CACGTG 1 cut(s) 81
AfaI GTAC 4 cut(s) 172, 762, 779, 911
AflIII ACRYGT 2 cut(s) 80, 483
AgsI TTSAA 8 cut(s) 19, 118, 305, 460, 874, 893, 976, 1184
AjuI GAANNNNNNNTTGG 2 cut(s) 396, 428
AloI GAACNNNNNNTCC 1 cut(s) 28
AluBI AGCT 8 cut(s) 74, 156, 385, 448, 601, 1005, 1021, 1162
AluI AGCT 8 cut(s) 74, 156, 385, 448, 601, 1005, 1021, 1162
Alw21I GWGCWC 1 cut(s) 603
Alw26I GTCTC 2 cut(s) 237, 634
AlwI GGATC 3 cut(s) 80, 131, 712
Ama87I CYCGRG 3 cut(s) 311, 709, 781
AoxI GGCC 2 cut(s) 294, 1305
ApeKI GCWGC 2 cut(s) 74, 180
AspLEI GCGC 1 cut(s) 748
AspS9I GGNCC 4 cut(s) 350, 422, 857, 1029
AsuC2I CCSGG 1 cut(s) 1304
AsuHPI GGTGA 5 cut(s) 319, 796, 914, 948, 1303
AsuII TTCGAA 1 cut(s) 337
AsuNHI GCTAGC 1 cut(s) 1021
AvaI CYCGRG 3 cut(s) 311, 709, 781
AvaII GGWCC 4 cut(s) 350, 422, 857, 1029
BalI TGGCCA 1 cut(s) 296
BanI GGYRCC 1 cut(s) 566
BanII GRGCYC 1 cut(s) 603
BarI GAAGNNNNNNTAC 2 cut(s) 761, 793
BbrPI CACGTG 1 cut(s) 81
BbsI GAAGAC 1 cut(s) 1253
Bbv12I GWGCWC 1 cut(s) 603
BbvCI CCTCAGC 1 cut(s) 1094
BbvI GCAGC 2 cut(s) 61, 167
BccI CCATC 6 cut(s) 233, 967, 971, 1055, 1108, 1278
BceAI ACGGC 1 cut(s) 901
BclI TGATCA 1 cut(s) 813
BcnI CCSGG 1 cut(s) 1304
BcoDI GTCTC 2 cut(s) 237, 634
BfaI CTAG 1 cut(s) 1022
BfoI RGCGCY 1 cut(s) 749
BglI GCCNNNNNGGC 1 cut(s) 564
BglII AGATCT 1 cut(s) 1068
BisI GCNGC 3 cut(s) 75, 181, 1128
BlsI GCNGC 3 cut(s) 76, 182, 1129
BmcAI AGTACT 1 cut(s) 779
Bme1390I CCNGG 1 cut(s) 1304
Bme18I GGWCC 4 cut(s) 350, 422, 857, 1029
BmeT110I CYCGRG 3 cut(s) 311, 709, 781
BmgT120I GGNCC 4 cut(s) 350, 422, 857, 1029
BmiI GGNNCC 3 cut(s) 424, 568, 1030
BmrFI CCNGG 1 cut(s) 1304
BmsI GCATC 1 cut(s) 279
BmtI GCTAGC 1 cut(s) 1025
BpiI GAAGAC 1 cut(s) 1253
BplI GAGNNNNNCTC 4 cut(s) 631, 663, 734, 766
Bpu10I CCTNAGC 1 cut(s) 1094
Bpu14I TTCGAA 1 cut(s) 337
BpuMI CCSGG 1 cut(s) 1304
Bsa29I ATCGAT 1 cut(s) 1050
BsaAI YACGTR 1 cut(s) 81
BsaJI CCNNGG 3 cut(s) 403, 544, 1188
BsaWI WCCGGW 3 cut(s) 51, 68, 1288
BsaXI ACNNNNNCTCC 3 cut(s) 26, 254, 284
Bse1I ACTGG 3 cut(s) 352, 859, 1308
BseCI ATCGAT 1 cut(s) 1050
BseDI CCNNGG 3 cut(s) 403, 544, 1188
BseGI GGATG 4 cut(s) 244, 399, 951, 959
BseMII CTCAG 4 cut(s) 166, 683, 1086, 1108
BseNI ACTGG 3 cut(s) 352, 859, 1308
BseXI GCAGC 2 cut(s) 61, 167
Bsh1236I CGCG 1 cut(s) 219
Bsh1285I CGRYCG 1 cut(s) 217
BshFI GGCC 2 cut(s) 296, 1307
BshNI GGYRCC 1 cut(s) 566
BshVI ATCGAT 1 cut(s) 1050
BsiEI CGRYCG 1 cut(s) 217
BsiHKAI GWGCWC 1 cut(s) 603
BsiHKCI CYCGRG 3 cut(s) 311, 709, 781
BsiSI CCGG 6 cut(s) 52, 69, 273, 1082, 1289, 1304
BslFI GGGAC 3 cut(s) 408, 727, 1042
BsmAI GTCTC 2 cut(s) 237, 634
BsmFI GGGAC 3 cut(s) 408, 727, 1042
BsmI GAATGC 1 cut(s) 147
BsnI GGCC 2 cut(s) 296, 1307
BsoBI CYCGRG 3 cut(s) 311, 709, 781
Bsp119I TTCGAA 1 cut(s) 337
Bsp1286I GDGCHC 1 cut(s) 603
Bsp143I GATC 9 cut(s) 85, 136, 613, 688, 717, 813, 832, 1051, 1068
BspACI CCGC 8 cut(s) 101, 192, 217, 556, 622, 1127, 1278, 1319
BspANI GGCC 2 cut(s) 296, 1307
BspCNI CTCAG 4 cut(s) 165, 684, 1085, 1107
BspDI ATCGAT 1 cut(s) 1050
BspFNI CGCG 1 cut(s) 219
BspLI GGNNCC 3 cut(s) 424, 568, 1030
BspOI GCTAGC 1 cut(s) 1025
BspPI GGATC 3 cut(s) 80, 131, 712
BspT104I TTCGAA 1 cut(s) 337
BspT107I GGYRCC 1 cut(s) 566
BsrBI CCGCTC 2 cut(s) 192, 1127
BsrI ACTGG 3 cut(s) 352, 859, 1308
BssECI CCNNGG 3 cut(s) 403, 544, 1188
BssMI GATC 9 cut(s) 85, 136, 613, 688, 717, 813, 832, 1051, 1068
BssT1I CCWWGG 2 cut(s) 403, 1188
Bst4CI ACNGT 1 cut(s) 1331
Bst6I CTCTTC 1 cut(s) 339
BstAPI GCANNNNNTGC 1 cut(s) 1235
BstBAI YACGTR 1 cut(s) 81
BstBI TTCGAA 1 cut(s) 337
BstC8I GCNNGC 5 cut(s) 294, 446, 666, 1023, 1227
BstDEI CTNAG 9 cut(s) 31, 152, 230, 449, 692, 1006, 1072, 1086, 1094
BstF5I GGATG 4 cut(s) 244, 399, 951, 959
BstFNI CGCG 1 cut(s) 219
BstH2I RGCGCY 1 cut(s) 749
BstHHI GCGC 1 cut(s) 748
BstKTI GATC 9 cut(s) 88, 139, 616, 691, 720, 816, 835, 1054, 1071
BstMAI GTCTC 2 cut(s) 237, 634
BstMBI GATC 9 cut(s) 85, 136, 613, 688, 717, 813, 832, 1051, 1068
BstMCI CGRYCG 1 cut(s) 217
BstMWI GCNNNNNNNGC 7 cut(s) 153, 189, 555, 564, 665, 885, 1235
BstNSI RCATGY 1 cut(s) 487
BstSCI CCNGG 1 cut(s) 1302
BstUI CGCG 1 cut(s) 219
BstV1I GCAGC 2 cut(s) 61, 167
BstV2I GAAGAC 1 cut(s) 1253
BstX2I RGATCY 2 cut(s) 136, 1068
BstYI RGATCY 2 cut(s) 136, 1068
Bsu15I ATCGAT 1 cut(s) 1050
BsuRI GGCC 2 cut(s) 296, 1307
BsuTUI ATCGAT 1 cut(s) 1050
BtsCI GGATG 4 cut(s) 244, 399, 951, 959
BtsIMutI CAGTG 1 cut(s) 1315
Cac8I GCNNGC 5 cut(s) 294, 446, 666, 1023, 1227
CfoI GCGC 1 cut(s) 748
Cfr13I GGNCC 4 cut(s) 350, 422, 857, 1029
ClaI ATCGAT 1 cut(s) 1050
CseI GACGC 2 cut(s) 193, 208
Csp6I GTAC 4 cut(s) 171, 761, 778, 910
CviAII CATG 3 cut(s) 159, 484, 592
CviQI GTAC 4 cut(s) 171, 761, 778, 910
DdeI CTNAG 9 cut(s) 31, 152, 230, 449, 692, 1006, 1072, 1086, 1094
DpnI GATC 9 cut(s) 87, 138, 615, 690, 719, 815, 834, 1053, 1070
DpnII GATC 9 cut(s) 85, 136, 613, 688, 717, 813, 832, 1051, 1068
DraI TTTAAA 1 cut(s) 586
EaeI YGGCCR 2 cut(s) 294, 1305
Eam1104I CTCTTC 1 cut(s) 339
EarI CTCTTC 1 cut(s) 339
Ecl136II GAGCTC 1 cut(s) 601
Eco130I CCWWGG 2 cut(s) 403, 1188
Eco24I GRGCYC 1 cut(s) 603
Eco32I GATATC 1 cut(s) 951
Eco47I GGWCC 4 cut(s) 350, 422, 857, 1029
Eco53kI GAGCTC 1 cut(s) 601
Eco57I CTGAAG 2 cut(s) 1016, 1265
Eco72I CACGTG 1 cut(s) 81
Eco88I CYCGRG 3 cut(s) 311, 709, 781
EcoICRI GAGCTC 1 cut(s) 601
EcoO109I RGGNCCY 1 cut(s) 1029
EcoRV GATATC 1 cut(s) 951
EcoT14I CCWWGG 2 cut(s) 403, 1188
EcoT38I GRGCYC 1 cut(s) 603
ErhI CCWWGG 2 cut(s) 403, 1188
FaeI CATG 3 cut(s) 162, 487, 595
FaiI YATR 8 cut(s) 128, 160, 395, 485, 498, 581, 593, 1041
FalI AAGNNNNNCTT 6 cut(s) 90, 122, 396, 428, 989, 1021
FaqI GGGAC 3 cut(s) 408, 727, 1042
FatI CATG 3 cut(s) 158, 483, 591
FauI CCCGC 3 cut(s) 94, 629, 1312
FbaI TGATCA 1 cut(s) 813
Fnu4HI GCNGC 3 cut(s) 75, 181, 1128
FokI GGATG 4 cut(s) 251, 386, 946, 958
FriOI GRGCYC 1 cut(s) 603
Fsp4HI GCNGC 3 cut(s) 75, 181, 1128
FspBI CTAG 1 cut(s) 1022
GlaI GCGC 1 cut(s) 747
GluI GCNGC 3 cut(s) 75, 181, 1128
HaeII RGCGCY 1 cut(s) 749
HaeIII GGCC 2 cut(s) 296, 1307
HapII CCGG 6 cut(s) 52, 69, 273, 1082, 1289, 1304
HgaI GACGC 2 cut(s) 193, 208
HhaI GCGC 1 cut(s) 748
Hin1II CATG 3 cut(s) 162, 487, 595
Hin6I GCGC 1 cut(s) 746
HinP1I GCGC 1 cut(s) 746
HincII GTYRAC 2 cut(s) 208, 531
HindII GTYRAC 2 cut(s) 208, 531
HindIII AAGCTT 1 cut(s) 1003
HinfI GANTC 9 cut(s) 319, 523, 893, 934, 1043, 1078, 1146, 1177, 1261
HpaI GTTAAC 1 cut(s) 531
HpaII CCGG 6 cut(s) 52, 69, 273, 1082, 1289, 1304
HphI GGTGA 5 cut(s) 319, 796, 914, 948, 1303
Hpy166II GTNNAC 3 cut(s) 208, 489, 531
Hpy188I TCNGA 7 cut(s) 374, 693, 813, 1060, 1113, 1124, 1145
Hpy8I GTNNAC 3 cut(s) 208, 489, 531
Hpy99I CGWCG 2 cut(s) 479, 655
HpyAV CCTTC 4 cut(s) 25, 150, 422, 437
HpyCH4III ACNGT 1 cut(s) 1331
HpyCH4IV ACGT 3 cut(s) 80, 1166, 1257
HpyCH4V TGCA 1 cut(s) 668
HpyF10VI GCNNNNNNNGC 7 cut(s) 153, 189, 555, 564, 665, 885, 1235
HpyF3I CTNAG 9 cut(s) 31, 152, 230, 449, 692, 1006, 1072, 1086, 1094
HpySE526I ACGT 3 cut(s) 80, 1166, 1257
Hsp92II CATG 3 cut(s) 162, 487, 595
HspAI GCGC 1 cut(s) 746
Ksp22I TGATCA 1 cut(s) 813
KspAI GTTAAC 1 cut(s) 531
Kzo9I GATC 9 cut(s) 85, 136, 613, 688, 717, 813, 832, 1051, 1068
LmnI GCTCC 3 cut(s) 17, 71, 189
Lsp1109I GCAGC 2 cut(s) 61, 167
LweI GCATC 1 cut(s) 279
MaeI CTAG 1 cut(s) 1022
MaeII ACGT 3 cut(s) 80, 1166, 1257
MaeIII GTNAC 4 cut(s) 220, 954, 1291, 1322
MalI GATC 9 cut(s) 87, 138, 615, 690, 719, 815, 834, 1053, 1070
MbiI CCGCTC 2 cut(s) 192, 1127
MboI GATC 9 cut(s) 85, 136, 613, 688, 717, 813, 832, 1051, 1068
MboII GAAGA 7 cut(s) 175, 314, 326, 781, 839, 1009, 1258
MfeI CAATTG 1 cut(s) 455
MflI RGATCY 2 cut(s) 136, 1068
MhlI GDGCHC 1 cut(s) 603
MlsI TGGCCA 1 cut(s) 296
MluCI AATT 6 cut(s) 19, 362, 388, 455, 517, 604
MluNI TGGCCA 1 cut(s) 296
MlyI GAGTC 4 cut(s) 517, 1087, 1171, 1270
Mox20I TGGCCA 1 cut(s) 296
MscI TGGCCA 1 cut(s) 296
MseI TTAA 4 cut(s) 530, 540, 585, 882
Msp20I TGGCCA 1 cut(s) 296
MspI CCGG 6 cut(s) 52, 69, 273, 1082, 1289, 1304
MspR9I CCNGG 1 cut(s) 1304
MunI CAATTG 1 cut(s) 455
Mva1269I GAATGC 1 cut(s) 147
MvnI CGCG 1 cut(s) 219
MwoI GCNNNNNNNGC 7 cut(s) 153, 189, 555, 564, 665, 885, 1235
NciI CCSGG 1 cut(s) 1304
NdeII GATC 9 cut(s) 85, 136, 613, 688, 717, 813, 832, 1051, 1068
NheI GCTAGC 1 cut(s) 1021
NlaIII CATG 3 cut(s) 162, 487, 595
NlaIV GGNNCC 3 cut(s) 424, 568, 1030
NmeAIII GCCGAG 1 cut(s) 525
NmuCI GTSAC 3 cut(s) 220, 954, 1291
NspI RCATGY 1 cut(s) 487
NspV TTCGAA 1 cut(s) 337
PaeR7I CTCGAG 1 cut(s) 311
PciI ACATGT 1 cut(s) 483
PctI GAATGC 1 cut(s) 147
PfeI GAWTC 5 cut(s) 319, 893, 934, 1043, 1146
PflFI GACNNNGTC 1 cut(s) 218
PkrI GCNGC 3 cut(s) 76, 182, 1129
PleI GAGTC 4 cut(s) 517, 1086, 1171, 1269
PmaCI CACGTG 1 cut(s) 81
PmlI CACGTG 1 cut(s) 81
PpsI GAGTC 4 cut(s) 517, 1086, 1171, 1269
Ppu21I YACGTR 1 cut(s) 81
PpuMI RGGWCCY 1 cut(s) 1029
PscI ACATGT 1 cut(s) 483
Psp124BI GAGCTC 1 cut(s) 603
Psp5II RGGWCCY 1 cut(s) 1029
PspCI CACGTG 1 cut(s) 81
PspN4I GGNNCC 3 cut(s) 424, 568, 1030
PspPI GGNCC 4 cut(s) 350, 422, 857, 1029
PspPPI RGGWCCY 1 cut(s) 1029
PsuI RGATCY 2 cut(s) 136, 1068
PsyI GACNNNGTC 1 cut(s) 218
RsaI GTAC 4 cut(s) 172, 762, 779, 911
RsaNI GTAC 4 cut(s) 171, 761, 778, 910
SacI GAGCTC 1 cut(s) 603
SaqAI TTAA 4 cut(s) 530, 540, 585, 882
SatI GCNGC 3 cut(s) 75, 181, 1128
Sau3AI GATC 9 cut(s) 85, 136, 613, 688, 717, 813, 832, 1051, 1068
Sau96I GGNCC 4 cut(s) 350, 422, 857, 1029
ScaI AGTACT 1 cut(s) 779
SchI GAGTC 4 cut(s) 517, 1087, 1171, 1270
ScrFI CCNGG 1 cut(s) 1304
SduI GDGCHC 1 cut(s) 603
SfaNI GCATC 1 cut(s) 279
Sfr274I CTCGAG 1 cut(s) 311
SfuI TTCGAA 1 cut(s) 337
SinI GGWCC 4 cut(s) 350, 422, 857, 1029
SlaI CTCGAG 1 cut(s) 311
SmiI ATTTAAAT 1 cut(s) 586
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
Sse9I AATT 6 cut(s) 19, 362, 388, 455, 517, 604
SsiI CCGC 8 cut(s) 101, 192, 217, 556, 622, 1127, 1278, 1319
SspMI CTAG 1 cut(s) 1022
SstI GAGCTC 1 cut(s) 603
StyD4I CCNGG 1 cut(s) 1302
StyI CCWWGG 2 cut(s) 403, 1188
SwaI ATTTAAAT 1 cut(s) 586
TaaI ACNGT 1 cut(s) 1331
TaiI ACGT 3 cut(s) 83, 1169, 1260
TaqI TCGA 9 cut(s) 312, 337, 474, 509, 653, 687, 767, 1050, 1149
TasI AATT 6 cut(s) 19, 362, 388, 455, 517, 604
TatI WGTACW 1 cut(s) 777
TauI GCSGC 1 cut(s) 1130
TfiI GAWTC 5 cut(s) 319, 893, 934, 1043, 1146
Tru1I TTAA 4 cut(s) 530, 540, 585, 882
Tru9I TTAA 4 cut(s) 530, 540, 585, 882
TscAI CASTG 1 cut(s) 1315
TseFI GTSAC 3 cut(s) 220, 954, 1291
TseI GCWGC 2 cut(s) 74, 180
Tsp45I GTSAC 3 cut(s) 220, 954, 1291
TspDTI ATGAA 6 cut(s) 16, 17, 355, 608, 1118, 1268
TspGWI ACGGA 4 cut(s) 273, 492, 639, 642
TspRI CASTG 1 cut(s) 1315
Tth111I GACNNNGTC 1 cut(s) 218
VpaK11BI GGWCC 4 cut(s) 350, 422, 857, 1029
XceI RCATGY 1 cut(s) 487
XhoI CTCGAG 1 cut(s) 311
XspI CTAG 1 cut(s) 1022
ZrmI AGTACT 1 cut(s) 779
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.