Rorug05G0500300

Leucine-rich repeat receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
68151605 .. 68155719
4115 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0500300.1

Sequence Viewer

Length: 1395 bp
ATGGGATCACAAGAGGATTTCATCATCAACAACATTGAGAATGCAATCGACGACGATCACAAGGGTTTAGTAAACGGCACGAATAATATAAATGGTGAGAATAAGGAGCAATGGAGTGTTGGGAAGACGCCTCAAAACCTGTCATCCTCCATGGTACGCAAAAAGTCCGACCCGATTCTTGTTTCTAATGTACGCTTCCAAATGCTCAGAAATTTTCTAAACAATTTGCAAGAGGTGATCCTTGGCACCAAGCTCGCCGTACTTTTTCCGGCCATTCCACTCGCGATTGCTGCTGATTTTTACCACTTCGGAAGACCTTGGGTTTTTGCTTTGAGTTTGTTGGGACTCACTCCACTGGCCGAACGTGTCAGCTTCCTCACCGAACAAATCGCATACTTCACCGGTCCAACAGTTGGGGGACTTCTTAATGCAACGTGTGGAAATGCAACAGAGATGATAATAGCACTATTTGCTCTTCATGAGAACAAAATAGATGTTGTCAAGTACTCCTTATTGGGTTCCATTCTCTCAAACCTCCTCCTTGTTCTTGGCACCTCTCTACTTTGTGGAGGCCTGGCCAACATCAAAAAAGAACAAAGATATGATAGAAAACAGGCTGATGTGAATTCACTACTGTTACTGCTGGGGTTACTATGTCACATGTTGCCACTTTTGTTCAGATATGCCTCAGGAGTTAGCAATTCCTATGCCACCTCCACTCTTGAATTGTCAAGAGCAAGCAGCATTTTTATGCTTATTGCATATGTTGCTTATATCTTCTTCCAGTTGAAAACACACCGCCAAGTGTTTGAATCACAAGAGGAAGATGATGAAGAAGAAGAGAAAGCAGTGATTGGATGTTGGAGTGCATTCGGTTGGCTGGCTGGTATGACAGTTATCATAGCGCTCTTGTCTGAGTATGTCGTGGGTACAATTGAGGCTGCATCAAACTCTTGGGGCATTTCTGTGACCTTTATCAGCATTATTTTGCTACCAATTGTGGGAAATGCAGCAGAACATGCTGGATCAATCATATTTGCTCTCAAGAACAAGTTGGACATATCTTTGGGTGTTTCTTTAGGTTCTGCGTCTCAAATCTCCATGTTTGTGGTCCCTTTAAGTGTGATTGTTGCTTGGATAATGGGGATTGAAATGGATCTTGACTTTAGTCTCCTTGAAACTGGTTCACTTGCTTTCACAATAATCATCACAGCCTTTACATTGCAGGATGGAACTTCACATTATATGAAAGGAGTCATTCTTTTCCTCTGCTACATTATTATTGCTGCTTGCTTTTTTGTTGACAAAACTCCCATGAATGATTCAAATGGTAGCAATTTGGGTAATGTACTTGAATTATCTTCCAACTATTATGCCGGAGTCTTGTTTGCTTGA

Protein Analysis

464

Amino Acids

50.65

Weight (kDa)

4.96

Isoelectric Point (pI)

36.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Na_Ca_ex PF01699 107 - 263 1.4e-21 Sodium/calcium exchanger protein
Na_Ca_ex PF01699 290 - 433 1.3e-19 Sodium/calcium exchanger protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 245, 551
AccB7I CCANNNNNTGG 1 cut(s) 413
AccII CGCG 1 cut(s) 284
AciI CCGC 1 cut(s) 799
AclWI GGATC 4 cut(s) 13, 232, 1033, 1164
AcoI YGGCCR 3 cut(s) 270, 357, 576
AcsI RAATTY 2 cut(s) 211, 625
AcyI GRCGYC 1 cut(s) 128
AfaI GTAC 6 cut(s) 156, 192, 261, 506, 931, 1350
AfeI AGCGCT 1 cut(s) 906
AfiI CCNNNNNNNGG 2 cut(s) 413, 1001
AflIII ACRYGT 3 cut(s) 364, 434, 660
AgeI ACCGGT 1 cut(s) 401
AgsI TTSAA 7 cut(s) 725, 790, 812, 1151, 1178, 1326, 1355
AjnI CCWGG 1 cut(s) 573
AluBI AGCT 2 cut(s) 253, 372
AluI AGCT 2 cut(s) 253, 372
Alw26I GTCTC 2 cut(s) 1095, 1175
AlwI GGATC 4 cut(s) 13, 232, 1033, 1164
Aor51HI AGCGCT 1 cut(s) 906
AoxI GGCC 4 cut(s) 270, 357, 571, 576
ApeKI GCWGC 5 cut(s) 290, 741, 941, 1010, 1286
ApoI RAATTY 2 cut(s) 211, 625
AsiGI ACCGGT 1 cut(s) 401
AspLEI GCGC 1 cut(s) 907
AspS9I GGNCC 2 cut(s) 404, 1111
AsuHPI GGTGA 4 cut(s) 107, 247, 370, 391
AvaII GGWCC 2 cut(s) 404, 1111
AxyI CCTNAGG 1 cut(s) 688
BalI TGGCCA 1 cut(s) 578
BanI GGYRCC 2 cut(s) 245, 551
BbsI GAAGAC 2 cut(s) 131, 319
BbvI GCAGC 5 cut(s) 277, 753, 928, 1022, 1273
BccI CCATC 1 cut(s) 1223
BceAI ACGGC 2 cut(s) 91, 242
BcgI CGANNNNNNTGC 2 cut(s) 235, 269
BciT130I CCWGG 1 cut(s) 575
BcoDI GTCTC 2 cut(s) 1095, 1175
BfoI RGCGCY 1 cut(s) 908
BisI GCNGC 5 cut(s) 291, 742, 942, 1011, 1287
BlsI GCNGC 5 cut(s) 292, 743, 943, 1012, 1288
BmcAI AGTACT 1 cut(s) 506
Bme1390I CCNGG 1 cut(s) 575
Bme18I GGWCC 2 cut(s) 404, 1111
BmgT120I GGNCC 2 cut(s) 404, 1111
BmiI GGNNCC 4 cut(s) 247, 520, 553, 1113
BmrFI CCNGG 1 cut(s) 575
BmsI GCATC 1 cut(s) 953
BoxI GACNNNNGTC 1 cut(s) 1167
BpiI GAAGAC 2 cut(s) 131, 319
BpuEI CTTGAG 1 cut(s) 1028
BsaHI GRCGYC 1 cut(s) 128
BsaJI CCNNGG 3 cut(s) 150, 241, 317
BsaWI WCCGGW 1 cut(s) 401
Bsc4I CCNNNNNNNGG 2 cut(s) 413, 1001
Bse118I RCCGGY 1 cut(s) 401
Bse1I ACTGG 3 cut(s) 360, 784, 1186
Bse21I CCTNAGG 1 cut(s) 688
Bse3DI GCAATG 2 cut(s) 116, 1220
BseBI CCWGG 1 cut(s) 575
BseDI CCNNGG 3 cut(s) 150, 241, 317
BseGI GGATG 3 cut(s) 143, 863, 1234
BseLI CCNNNNNNNGG 2 cut(s) 413, 1001
BseMI GCAATG 2 cut(s) 116, 1220
BseMII CTCAG 3 cut(s) 220, 702, 906
BseNI ACTGG 3 cut(s) 360, 784, 1186
BseRI GAGGAG 1 cut(s) 527
BseXI GCAGC 5 cut(s) 277, 753, 928, 1022, 1273
BseYI CCCAGC 1 cut(s) 643
Bsh1236I CGCG 1 cut(s) 284
BshFI GGCC 4 cut(s) 272, 359, 573, 578
BshNI GGYRCC 2 cut(s) 245, 551
BshTI ACCGGT 1 cut(s) 401
BsiSI CCGG 3 cut(s) 269, 402, 1377
BslFI GGGAC 3 cut(s) 357, 432, 1097
BslI CCNNNNNNNGG 2 cut(s) 413, 1001
BsmAI GTCTC 2 cut(s) 1095, 1175
BsmBI CGTCTC 1 cut(s) 1095
BsmFI GGGAC 3 cut(s) 357, 432, 1097
BsmI GAATGC 2 cut(s) 46, 869
BsnI GGCC 4 cut(s) 272, 359, 573, 578
Bsp143I GATC 5 cut(s) 5, 55, 237, 1025, 1156
Bsp19I CCATGG 1 cut(s) 150
Bsp68I TCGCGA 1 cut(s) 284
BspACI CCGC 1 cut(s) 799
BspANI GGCC 4 cut(s) 272, 359, 573, 578
BspCNI CTCAG 3 cut(s) 219, 701, 907
BspFNI CGCG 1 cut(s) 284
BspHI TCATGA 1 cut(s) 478
BspLI GGNNCC 4 cut(s) 247, 520, 553, 1113
BspPI GGATC 4 cut(s) 13, 232, 1033, 1164
BspQI GCTCTTC 1 cut(s) 480
BspT107I GGYRCC 2 cut(s) 245, 551
BsrDI GCAATG 2 cut(s) 116, 1220
BsrFI RCCGGY 1 cut(s) 401
BsrI ACTGG 3 cut(s) 360, 784, 1186
BssAI RCCGGY 1 cut(s) 401
BssECI CCNNGG 3 cut(s) 150, 241, 317
BssMI GATC 5 cut(s) 5, 55, 237, 1025, 1156
BssNI GRCGYC 1 cut(s) 128
BssT1I CCWWGG 3 cut(s) 150, 241, 317
Bst2UI CCWGG 1 cut(s) 575
Bst4CI ACNGT 3 cut(s) 412, 636, 895
Bst6I CTCTTC 2 cut(s) 480, 834
BstACI GRCGYC 1 cut(s) 128
BstAPI GCANNNNNTGC 3 cut(s) 470, 767, 1019
BstC8I GCNNGC 4 cut(s) 255, 739, 882, 1291
BstDEI CTNAG 3 cut(s) 206, 688, 915
BstDSI CCRYGG 1 cut(s) 150
BstF5I GGATG 3 cut(s) 143, 863, 1234
BstFNI CGCG 1 cut(s) 284
BstH2I RGCGCY 1 cut(s) 908
BstHHI GCGC 1 cut(s) 907
BstKTI GATC 5 cut(s) 8, 58, 240, 1028, 1159
BstMAI GTCTC 2 cut(s) 1095, 1175
BstMBI GATC 5 cut(s) 5, 55, 237, 1025, 1156
BstMWI GCNNNNNNNGC 4 cut(s) 290, 470, 767, 1019
BstNI CCWGG 1 cut(s) 575
BstNSI RCATGY 2 cut(s) 664, 1022
BstPAI GACNNNNGTC 1 cut(s) 1167
BstSCI CCNGG 1 cut(s) 573
BstUI CGCG 1 cut(s) 284
BstV1I GCAGC 5 cut(s) 277, 753, 928, 1022, 1273
BstV2I GAAGAC 2 cut(s) 131, 319
BstX2I RGATCY 1 cut(s) 1156
BstXI CCANNNNNNTGG 1 cut(s) 1108
BstYI RGATCY 1 cut(s) 1156
Bsu36I CCTNAGG 1 cut(s) 688
BsuRI GGCC 4 cut(s) 272, 359, 573, 578
BtgI CCRYGG 1 cut(s) 150
BtsCI GGATG 3 cut(s) 143, 863, 1234
BtsI GCAGTG 1 cut(s) 855
BtsIMutI CAGTG 2 cut(s) 353, 855
BtuMI TCGCGA 1 cut(s) 284
Cac8I GCNNGC 4 cut(s) 255, 739, 882, 1291
CciI TCATGA 1 cut(s) 478
CfoI GCGC 1 cut(s) 907
Cfr10I RCCGGY 1 cut(s) 401
Cfr13I GGNCC 2 cut(s) 404, 1111
CseI GACGC 2 cut(s) 136, 1077
Csp6I GTAC 6 cut(s) 155, 191, 260, 505, 930, 1349
CspAI ACCGGT 1 cut(s) 401
CviAII CATG 6 cut(s) 151, 479, 661, 1019, 1102, 1315
CviQI GTAC 6 cut(s) 155, 191, 260, 505, 930, 1349
DdeI CTNAG 3 cut(s) 206, 688, 915
DpnI GATC 5 cut(s) 7, 57, 239, 1027, 1158
DpnII GATC 5 cut(s) 5, 55, 237, 1025, 1156
EaeI YGGCCR 3 cut(s) 270, 357, 576
Eam1104I CTCTTC 2 cut(s) 480, 834
EarI CTCTTC 2 cut(s) 480, 834
Eco130I CCWWGG 3 cut(s) 150, 241, 317
Eco147I AGGCCT 1 cut(s) 573
Eco47I GGWCC 2 cut(s) 404, 1111
Eco47III AGCGCT 1 cut(s) 906
Eco81I CCTNAGG 1 cut(s) 688
EcoRI GAATTC 1 cut(s) 625
EcoRII CCWGG 1 cut(s) 573
EcoT14I CCWWGG 3 cut(s) 150, 241, 317
ErhI CCWWGG 3 cut(s) 150, 241, 317
Esp3I CGTCTC 1 cut(s) 1095
FaeI CATG 6 cut(s) 154, 482, 664, 1022, 1105, 1318
FalI AAGNNNNNCTT 2 cut(s) 494, 526
FaqI GGGAC 3 cut(s) 357, 432, 1097
FatI CATG 6 cut(s) 150, 478, 660, 1018, 1101, 1314
FauNDI CATATG 1 cut(s) 763
Fnu4HI GCNGC 5 cut(s) 291, 742, 942, 1011, 1287
FokI GGATG 3 cut(s) 130, 870, 1241
Fsp4HI GCNGC 5 cut(s) 291, 742, 942, 1011, 1287
GlaI GCGC 1 cut(s) 906
GluI GCNGC 5 cut(s) 291, 742, 942, 1011, 1287
GsaI CCCAGC 1 cut(s) 647
HaeII RGCGCY 1 cut(s) 908
HaeIII GGCC 4 cut(s) 272, 359, 573, 578
HapII CCGG 3 cut(s) 269, 402, 1377
HgaI GACGC 2 cut(s) 136, 1077
HhaI GCGC 1 cut(s) 907
Hin1I GRCGYC 1 cut(s) 128
Hin1II CATG 6 cut(s) 154, 482, 664, 1022, 1105, 1318
Hin6I GCGC 1 cut(s) 905
HinP1I GCGC 1 cut(s) 905
HincII GTYRAC 1 cut(s) 1303
HindII GTYRAC 1 cut(s) 1303
HinfI GANTC 6 cut(s) 175, 345, 812, 1254, 1322, 1380
HpaII CCGG 3 cut(s) 269, 402, 1377
HphI GGTGA 4 cut(s) 107, 247, 370, 391
Hpy166II GTNNAC 3 cut(s) 73, 1187, 1303
Hpy188I TCNGA 5 cut(s) 169, 209, 311, 680, 916
Hpy188III TCNNGA 7 cut(s) 283, 479, 690, 722, 732, 1045, 1160
Hpy8I GTNNAC 3 cut(s) 73, 1187, 1303
Hpy99I CGWCG 2 cut(s) 53, 56
HpyCH4III ACNGT 3 cut(s) 412, 636, 895
HpyCH4IV ACGT 2 cut(s) 364, 434
HpyCH4V TGCA 9 cut(s) 44, 229, 431, 446, 761, 869, 944, 1010, 1225
HpyF10VI GCNNNNNNNGC 4 cut(s) 290, 470, 767, 1019
HpyF3I CTNAG 3 cut(s) 206, 688, 915
HpySE526I ACGT 2 cut(s) 364, 434
Hsp92I GRCGYC 1 cut(s) 128
Hsp92II CATG 6 cut(s) 154, 482, 664, 1022, 1105, 1318
HspAI GCGC 1 cut(s) 905
Kzo9I GATC 5 cut(s) 5, 55, 237, 1025, 1156
LguI GCTCTTC 1 cut(s) 480
LmnI GCTCC 1 cut(s) 106
Lsp1109I GCAGC 5 cut(s) 277, 753, 928, 1022, 1273
LweI GCATC 1 cut(s) 953
MaeII ACGT 2 cut(s) 364, 434
MaeIII GTNAC 4 cut(s) 636, 648, 656, 967
MalI GATC 5 cut(s) 7, 57, 239, 1027, 1158
MboI GATC 5 cut(s) 5, 55, 237, 1025, 1156
MfeI CAATTG 2 cut(s) 933, 996
MflI RGATCY 1 cut(s) 1156
MlsI TGGCCA 1 cut(s) 578
MluCI AATT 9 cut(s) 211, 223, 625, 700, 725, 933, 996, 1336, 1355
MluNI TGGCCA 1 cut(s) 578
MlyI GAGTC 3 cut(s) 339, 1263, 1389
MmeI TCCRAC 5 cut(s) 192, 431, 842, 1035, 1389
Mox20I TGGCCA 1 cut(s) 578
MscI TGGCCA 1 cut(s) 578
MseI TTAA 2 cut(s) 426, 1118
MslI CAYNNNNRTG 3 cut(s) 749, 965, 1106
Msp20I TGGCCA 1 cut(s) 578
MspI CCGG 3 cut(s) 269, 402, 1377
MspR9I CCNGG 1 cut(s) 575
MunI CAATTG 2 cut(s) 933, 996
Mva1269I GAATGC 2 cut(s) 46, 869
MvaI CCWGG 1 cut(s) 575
MvnI CGCG 1 cut(s) 284
MwoI GCNNNNNNNGC 4 cut(s) 290, 470, 767, 1019
NcoI CCATGG 1 cut(s) 150
NdeI CATATG 1 cut(s) 763
NdeII GATC 5 cut(s) 5, 55, 237, 1025, 1156
NlaIII CATG 6 cut(s) 154, 482, 664, 1022, 1105, 1318
NlaIV GGNNCC 4 cut(s) 247, 520, 553, 1113
NmuCI GTSAC 2 cut(s) 656, 967
NruI TCGCGA 1 cut(s) 284
NspI RCATGY 2 cut(s) 664, 1022
PagI TCATGA 1 cut(s) 478
PceI AGGCCT 1 cut(s) 573
PciI ACATGT 1 cut(s) 660
PciSI GCTCTTC 1 cut(s) 480
PctI GAATGC 2 cut(s) 46, 869
PfeI GAWTC 3 cut(s) 175, 812, 1322
PflMI CCANNNNNTGG 1 cut(s) 413
PinAI ACCGGT 1 cut(s) 401
PkrI GCNGC 5 cut(s) 292, 743, 943, 1012, 1288
PleI GAGTC 3 cut(s) 339, 1262, 1388
PpsI GAGTC 3 cut(s) 339, 1262, 1388
PscI ACATGT 1 cut(s) 660
PshAI GACNNNNGTC 1 cut(s) 1167
Psp6I CCWGG 1 cut(s) 573
PspFI CCCAGC 1 cut(s) 643
PspGI CCWGG 1 cut(s) 573
PspN4I GGNNCC 4 cut(s) 247, 520, 553, 1113
PspPI GGNCC 2 cut(s) 404, 1111
PsuI RGATCY 1 cut(s) 1156
RruI TCGCGA 1 cut(s) 284
RsaI GTAC 6 cut(s) 156, 192, 261, 506, 931, 1350
RsaNI GTAC 6 cut(s) 155, 191, 260, 505, 930, 1349
RseI CAYNNNNRTG 3 cut(s) 749, 965, 1106
SapI GCTCTTC 1 cut(s) 480
SaqAI TTAA 2 cut(s) 426, 1118
SatI GCNGC 5 cut(s) 291, 742, 942, 1011, 1287
Sau3AI GATC 5 cut(s) 5, 55, 237, 1025, 1156
Sau96I GGNCC 2 cut(s) 404, 1111
ScaI AGTACT 1 cut(s) 506
SchI GAGTC 3 cut(s) 339, 1263, 1389
ScrFI CCNGG 1 cut(s) 575
SfaNI GCATC 1 cut(s) 953
SinI GGWCC 2 cut(s) 404, 1111
SmiMI CAYNNNNRTG 3 cut(s) 749, 965, 1106
SmlI CTYRAG 1 cut(s) 1043
SmoI CTYRAG 1 cut(s) 1043
Sse9I AATT 9 cut(s) 211, 223, 625, 700, 725, 933, 996, 1336, 1355
SseBI AGGCCT 1 cut(s) 573
SsiI CCGC 1 cut(s) 799
StuI AGGCCT 1 cut(s) 573
StyD4I CCNGG 1 cut(s) 573
StyI CCWWGG 3 cut(s) 150, 241, 317
TaaI ACNGT 3 cut(s) 412, 636, 895
TaiI ACGT 2 cut(s) 367, 437
TaqI TCGA 1 cut(s) 48
TasI AATT 9 cut(s) 211, 223, 625, 700, 725, 933, 996, 1336, 1355
TatI WGTACW 2 cut(s) 504, 1348
TfiI GAWTC 3 cut(s) 175, 812, 1322
Tru1I TTAA 2 cut(s) 426, 1118
Tru9I TTAA 2 cut(s) 426, 1118
TscAI CASTG 2 cut(s) 360, 855
TseFI GTSAC 2 cut(s) 656, 967
TseI GCWGC 5 cut(s) 290, 741, 941, 1010, 1286
Tsp45I GTSAC 2 cut(s) 656, 967
TspDTI ATGAA 5 cut(s) 10, 467, 846, 1262, 1331
TspRI CASTG 2 cut(s) 360, 855
Van91I CCANNNNNTGG 1 cut(s) 413
VpaK11BI GGWCC 2 cut(s) 404, 1111
XapI RAATTY 2 cut(s) 211, 625
XceI RCATGY 2 cut(s) 664, 1022
ZrmI AGTACT 1 cut(s) 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.